RNA–Protein interactions for RNA: ENST00000395098.5

VPS26A-203, Transcript of VPS26, retromer complex component A, humanhuman

TSL 5 BASIC

Gene VPS26A, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-203ENST00000395098 NISCHQ9Y2I1 1504 aa30.23■■■□□ 2.43
VPS26A-203ENST00000395098 CCDC180Q9P1Z9 1646 aa26.38■■□□□ 1.81
VPS26A-203ENST00000395098 ZCCHC6Q5VYS8 1495 aaKnown RBP25.36■■□□□ 1.65
VPS26A-203ENST00000395098 ABCC9O60706 1549 aa25.22■■□□□ 1.63
VPS26A-203ENST00000395098 DCAF8L2P0C7V8 631 aa25.08■■□□□ 1.61
VPS26A-203ENST00000395098 DCAF1Q9Y4B6 1507 aa24.95■■□□□ 1.58
VPS26A-203ENST00000395098 MYO15BQ96JP2 1530 aa24.71■■□□□ 1.55
VPS26A-203ENST00000395098 NACADO15069 1562 aa24.64■■□□□ 1.53
VPS26A-203ENST00000395098 SHROOM4Q9ULL8 1493 aa24.6■■□□□ 1.53
VPS26A-203ENST00000395098 RB1CC1Q8TDY2 1594 aa24.47■■□□□ 1.51
VPS26A-203ENST00000395098 SCRIBQ14160 1630 aa24.31■■□□□ 1.48
VPS26A-203ENST00000395098 UNC13AQ9UPW8 1703 aa23.98■■□□□ 1.43
VPS26A-203ENST00000395098 BICRAQ9NZM4 1560 aa23.8■■□□□ 1.4
VPS26A-203ENST00000395098 PABPN1Q86U42 306 aaKnown RBP eCLIP23.78■■□□□ 1.4
VPS26A-203ENST00000395098 CECR2Q9BXF3 1484 aa23.56■■□□□ 1.36
VPS26A-203ENST00000395098 SUPT5HO00267 1087 aaKnown RBP23.55■■□□□ 1.36
VPS26A-203ENST00000395098 RSF1Q96T23 1441 aaPredicted RBP23.41■■□□□ 1.34
VPS26A-203ENST00000395098 MROH2BQ7Z745 1585 aa23.38■■□□□ 1.33
VPS26A-203ENST00000395098 BAZ1AQ9NRL2 1556 aaPredicted RBP23.33■■□□□ 1.33
VPS26A-203ENST00000395098 SMARCA4P51532 1647 aa23.27■■□□□ 1.32
VPS26A-203ENST00000395098 WIZO95785 1651 aa23.16■■□□□ 1.3
VPS26A-203ENST00000395098 EIF4G1Q04637 1599 aaKnown RBP23.08■■□□□ 1.28
VPS26A-203ENST00000395098 PEG3Q9GZU2 1588 aa22.98■■□□□ 1.27
VPS26A-203ENST00000395098 ATAD2BQ9ULI0 1458 aa22.96■■□□□ 1.27
VPS26A-203ENST00000395098 TOP2AP11388 1531 aaKnown RBP22.88■■□□□ 1.25
VPS26A-203ENST00000395098 SMARCA2P51531 1590 aa22.88■■□□□ 1.25
VPS26A-203ENST00000395098 BAZ1BQ9UIG0 1483 aaKnown RBP22.8■■□□□ 1.24
VPS26A-203ENST00000395098 CC2D2AQ9P2K1 1620 aa22.79■■□□□ 1.24
VPS26A-203ENST00000395098 NCAPD3P42695 1498 aa22.77■■□□□ 1.24
VPS26A-203ENST00000395098 HMGXB3Q12766 1538 aa22.7■■□□□ 1.22
VPS26A-203ENST00000395098 CCDC88BA6NC98 1476 aa22.69■■□□□ 1.22
VPS26A-203ENST00000395098 DNAJC5BQ9UF47 199 aa22.49■■□□□ 1.19
VPS26A-203ENST00000395098 CHIC1Q5VXU3 224 aa22.45■■□□□ 1.18
VPS26A-203ENST00000395098 CFTRP13569 1480 aa22.22■■□□□ 1.15
VPS26A-203ENST00000395098 CADPSQ9ULU8 1353 aa22.19■■□□□ 1.14
VPS26A-203ENST00000395098 ABCC8Q09428 1581 aa22.17■■□□□ 1.14
VPS26A-203ENST00000395098 TRIM41Q8WV44 630 aa22.12■■□□□ 1.13
VPS26A-203ENST00000395098 NESP48681 1621 aa22.1■■□□□ 1.13
VPS26A-203ENST00000395098 WRNQ14191 1432 aaPredicted RBP eCLIP22.01■■□□□ 1.11
VPS26A-203ENST00000395098 PRDM2Q13029 1718 aa22.01■■□□□ 1.11
VPS26A-203ENST00000395098 LAMC3Q9Y6N6 1575 aa21.99■■□□□ 1.11
VPS26A-203ENST00000395098 SYNJ1O43426 1573 aa21.95■■□□□ 1.1
VPS26A-203ENST00000395098 FANCD2Q9BXW9 1451 aa21.94■■□□□ 1.1
VPS26A-203ENST00000395098 CUX1P39880 1505 aa21.86■■□□□ 1.09
VPS26A-203ENST00000395098 PDS5BQ9NTI5 1447 aa21.85■■□□□ 1.09
VPS26A-203ENST00000395098 TOP2BQ02880 1626 aa21.83■■□□□ 1.09
VPS26A-203ENST00000395098 CEP164Q9UPV0 1460 aa21.8■■□□□ 1.08
VPS26A-203ENST00000395098 BIVM-ERCC5R4GMW8 1640 aa21.8■■□□□ 1.08
VPS26A-203ENST00000395098 KIF21AQ7Z4S6 1674 aa21.77■■□□□ 1.08
VPS26A-203ENST00000395098 FAM9AQ8IZU1 332 aaPredicted RBP21.77■■□□□ 1.08
VPS26A-203ENST00000395098 SOGA1O94964 1423 aa21.73■■□□□ 1.07
VPS26A-203ENST00000395098 URB2Q14146 1524 aaKnown RBP21.7■■□□□ 1.06
VPS26A-203ENST00000395098 TOPBP1Q92547 1522 aa21.68■■□□□ 1.06
VPS26A-203ENST00000395098 DNMBPQ6XZF7 1577 aa21.68■■□□□ 1.06
VPS26A-203ENST00000395098 RUSC2Q8N2Y8 1516 aa21.67■■□□□ 1.06
VPS26A-203ENST00000395098 FGD5Q6ZNL6 1462 aa21.65■■□□□ 1.06
VPS26A-203ENST00000395098 LOC105371045A0A1W2PR82 267 aa21.61■■□□□ 1.05
VPS26A-203ENST00000395098 ERCC6Q03468 1493 aa21.6■■□□□ 1.05
VPS26A-203ENST00000395098 MRC2Q9UBG0 1479 aa21.59■■□□□ 1.05
VPS26A-203ENST00000395098 POLA1P09884 1462 aaPredicted RBP21.58■■□□□ 1.04
VPS26A-203ENST00000395098 EEA1Q15075 1411 aa21.54■■□□□ 1.04
VPS26A-203ENST00000395098 RAD54L2Q9Y4B4 1467 aa21.53■■□□□ 1.04
VPS26A-203ENST00000395098 CSRNP3Q8WYN3 585 aa21.5■■□□□ 1.03
VPS26A-203ENST00000395098 EHMT2Q96KQ7 1210 aa21.5■■□□□ 1.03
VPS26A-203ENST00000395098 WDR62O43379 1518 aa21.49■■□□□ 1.03
VPS26A-203ENST00000395098 THOC2Q8NI27 1593 aaKnown RBP21.47■■□□□ 1.03
VPS26A-203ENST00000395098 CUX2O14529 1486 aa21.47■■□□□ 1.03
VPS26A-203ENST00000395098 KIF27Q86VH2 1401 aa21.45■■□□□ 1.02
VPS26A-203ENST00000395098 ABCA10Q8WWZ4 1543 aa21.43■■□□□ 1.02
VPS26A-203ENST00000395098 TARBP1Q13395 1621 aaKnown RBP21.37■■□□□ 1.01
VPS26A-203ENST00000395098 WDR97A6NE52 1622 aa21.36■■□□□ 1.01
VPS26A-203ENST00000395098 TDRD9Q8NDG6 1382 aaKnown RBP21.34■■□□□ 1.01
VPS26A-203ENST00000395098 IGF1RP08069 1367 aa21.33■■□□□ 1.01
VPS26A-203ENST00000395098 KIF21BO75037 1637 aa21.29■■□□□ 1
VPS26A-203ENST00000395098 IFT140Q96RY7 1462 aa21.29■■□□□ 1
VPS26A-203ENST00000395098 PRXQ9BXM0 1461 aa21.29■■□□□ 1
VPS26A-203ENST00000395098 RAPGEF2Q9Y4G8 1499 aa21.27■■□□□ 1
VPS26A-203ENST00000395098 ABCA5Q8WWZ7 1642 aa21.27■■□□□ 1
VPS26A-203ENST00000395098 GOLGA3Q08378 1498 aa21.26■□□□□ 0.99
VPS26A-203ENST00000395098 GAPVD1Q14C86 1478 aa21.25■□□□□ 0.99
VPS26A-203ENST00000395098 ZNF608Q9ULD9 1512 aaPredicted RBP21.25■□□□□ 0.99
VPS26A-203ENST00000395098 AQRO60306 1485 aaKnown RBP eCLIP21.23■□□□□ 0.99
VPS26A-203ENST00000395098 UBTFP17480 764 aaKnown RBP21.21■□□□□ 0.99
VPS26A-203ENST00000395098 CARMIL1Q5VZK9 1371 aa21.2■□□□□ 0.98
VPS26A-203ENST00000395098 ERICH3Q5RHP9 1530 aa21.18■□□□□ 0.98
VPS26A-203ENST00000395098 TNIKQ9UKE5 1360 aa21.18■□□□□ 0.98
VPS26A-203ENST00000395098 EIF4G3O43432 1585 aaKnown RBP21.12■□□□□ 0.97
VPS26A-203ENST00000395098 PBRM1Q86U86 1689 aa21.1■□□□□ 0.97
VPS26A-203ENST00000395098 CUL7Q14999 1698 aa21.1■□□□□ 0.97
VPS26A-203ENST00000395098 GRIN2BQ13224 1484 aa21.1■□□□□ 0.97
VPS26A-203ENST00000395098 CEP162Q5TB80 1403 aa21.07■□□□□ 0.96
VPS26A-203ENST00000395098 SNAPC4Q5SXM2 1469 aa21.01■□□□□ 0.95
VPS26A-203ENST00000395098 FHAD1B1AJZ9 1412 aa21■□□□□ 0.95
VPS26A-203ENST00000395098 ADAMTS12P58397 1594 aa21■□□□□ 0.95
VPS26A-203ENST00000395098 RANGAP1P46060 587 aaPredicted RBP20.98■□□□□ 0.95
VPS26A-203ENST00000395098 CLIP1P30622 1438 aa20.94■□□□□ 0.94
VPS26A-203ENST00000395098 MAGI1Q96QZ7 1491 aaPredicted RBP20.93■□□□□ 0.94
VPS26A-203ENST00000395098 SYNJ2O15056 1496 aa20.87■□□□□ 0.93
VPS26A-203ENST00000395098 GRIN2AQ12879 1464 aa20.85■□□□□ 0.93
VPS26A-203ENST00000395098 CHMP7Q8WUX9 453 aaPredicted RBP20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms