Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RAF1P04049 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.43■□□□□ 0.86
RAF1P04049 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
RAF1P04049 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RAF1P04049 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.43■□□□□ 0.86
RAF1P04049 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.43■□□□□ 0.86
RAF1P04049 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RAF1P04049 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RAF1P04049 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RAF1P04049 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RAF1P04049 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RAF1P04049 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RAF1P04049 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.42■□□□□ 0.86
RAF1P04049 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RAF1P04049 AC010997.5-201ENST00000609182 354 ntBASIC20.42■□□□□ 0.86
RAF1P04049 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RAF1P04049 AL117332.1-201ENST00000622628 974 ntBASIC20.42■□□□□ 0.86
RAF1P04049 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
RAF1P04049 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
RAF1P04049 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RAF1P04049 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
RAF1P04049 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.42■□□□□ 0.86
RAF1P04049 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC20.42■□□□□ 0.86
RAF1P04049 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.41■□□□□ 0.86
RAF1P04049 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
RAF1P04049 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
RAF1P04049 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RAF1P04049 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RAF1P04049 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RAF1P04049 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RAF1P04049 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RAF1P04049 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RAF1P04049 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.4■□□□□ 0.86
RAF1P04049 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.4■□□□□ 0.86
RAF1P04049 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.4■□□□□ 0.86
RAF1P04049 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.4■□□□□ 0.86
RAF1P04049 MIR4281-201ENST00000580852 62 ntBASIC20.4■□□□□ 0.86
RAF1P04049 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.4■□□□□ 0.86
RAF1P04049 MTDHP2-201ENST00000601468 714 ntBASIC20.4■□□□□ 0.86
RAF1P04049 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.4■□□□□ 0.86
RAF1P04049 MIR6724-1-201ENST00000616420 92 ntBASIC20.4■□□□□ 0.86
RAF1P04049 MIR6724-2-201ENST00000616483 92 ntBASIC20.4■□□□□ 0.86
RAF1P04049 MIR6724-4-201ENST00000617390 92 ntBASIC20.4■□□□□ 0.86
RAF1P04049 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RAF1P04049 MIR6724-3-201ENST00000622482 92 ntBASIC20.4■□□□□ 0.86
RAF1P04049 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RAF1P04049 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RAF1P04049 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
RAF1P04049 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
RAF1P04049 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RAF1P04049 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
RAF1P04049 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.39■□□□□ 0.85
RAF1P04049 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
RAF1P04049 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.39■□□□□ 0.85
RAF1P04049 MIR3621-201ENST00000580529 85 ntBASIC20.39■□□□□ 0.85
RAF1P04049 AL356740.2-201ENST00000601559 647 ntBASIC20.39■□□□□ 0.85
RAF1P04049 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RAF1P04049 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
RAF1P04049 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.38■□□□□ 0.85
RAF1P04049 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.38■□□□□ 0.85
RAF1P04049 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.38■□□□□ 0.85
RAF1P04049 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RAF1P04049 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RAF1P04049 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RAF1P04049 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RAF1P04049 AC110285.6-201ENST00000617652 491 ntBASIC20.38■□□□□ 0.85
RAF1P04049 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RAF1P04049 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RAF1P04049 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
RAF1P04049 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RAF1P04049 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RAF1P04049 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RAF1P04049 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RAF1P04049 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.37■□□□□ 0.85
RAF1P04049 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.37■□□□□ 0.85
RAF1P04049 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
RAF1P04049 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
RAF1P04049 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAF1P04049 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAF1P04049 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAF1P04049 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAF1P04049 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RAF1P04049 AC005837.3-201ENST00000612163 286 ntBASIC20.36■□□□□ 0.85
RAF1P04049 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAF1P04049 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAF1P04049 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAF1P04049 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RAF1P04049 ABCB10P4-201ENST00000566803 2184 ntBASIC20.35■□□□□ 0.85
RAF1P04049 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RAF1P04049 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC20.35■□□□□ 0.85
RAF1P04049 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RAF1P04049 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
RAF1P04049 AC096631.2-201ENST00000436136 790 ntBASIC20.35■□□□□ 0.85
RAF1P04049 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.35■□□□□ 0.85
RAF1P04049 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
RAF1P04049 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.35■□□□□ 0.85
RAF1P04049 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RAF1P04049 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.35■□□□□ 0.85
RAF1P04049 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RAF1P04049 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms