RNA–Protein interactions for RNA: ENST00000494426.1

CLIC3-203, Transcript of chloride intracellular channel 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIC3, Length 1,017 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC3-203ENST00000494426 NISCHQ9Y2I1 1504 aa56.94■■■■■ 6.71
CLIC3-203ENST00000494426 CCDC180Q9P1Z9 1646 aa50.54■■■■■ 5.68
CLIC3-203ENST00000494426 ABCC9O60706 1549 aa49.39■■■■■ 5.5
CLIC3-203ENST00000494426 RB1CC1Q8TDY2 1594 aa47.51■■■■■ 5.2
CLIC3-203ENST00000494426 NACADO15069 1562 aa47.49■■■■■ 5.19
CLIC3-203ENST00000494426 DCAF8L2P0C7V8 631 aa47.49■■■■■ 5.19
CLIC3-203ENST00000494426 ZCCHC6Q5VYS8 1495 aaKnown RBP47.44■■■■■ 5.18
CLIC3-203ENST00000494426 MYO15BQ96JP2 1530 aa47.24■■■■■ 5.15
CLIC3-203ENST00000494426 DCAF1Q9Y4B6 1507 aa47.09■■■■■ 5.13
CLIC3-203ENST00000494426 UNC13AQ9UPW8 1703 aa46.54■■■■■ 5.04
CLIC3-203ENST00000494426 PABPN1Q86U42 306 aaKnown RBP eCLIP46.18■■■■■ 4.98
CLIC3-203ENST00000494426 BICRAQ9NZM4 1560 aa46.17■■■■■ 4.98
CLIC3-203ENST00000494426 SCRIBQ14160 1630 aa46.14■■■■■ 4.98
CLIC3-203ENST00000494426 SHROOM4Q9ULL8 1493 aa45.55■■■■■ 4.88
CLIC3-203ENST00000494426 DNAJC5BQ9UF47 199 aa45.34■■■■■ 4.85
CLIC3-203ENST00000494426 EIF4G1Q04637 1599 aaKnown RBP44.89■■■■■ 4.78
CLIC3-203ENST00000494426 CC2D2AQ9P2K1 1620 aa44.69■■■■■ 4.74
CLIC3-203ENST00000494426 CECR2Q9BXF3 1484 aa44.39■■■■■ 4.7
CLIC3-203ENST00000494426 SMARCA4P51532 1647 aa44.15■■■■■ 4.66
CLIC3-203ENST00000494426 BAZ1AQ9NRL2 1556 aaPredicted RBP44.08■■■■■ 4.65
CLIC3-203ENST00000494426 MROH2BQ7Z745 1585 aa43.91■■■■■ 4.62
CLIC3-203ENST00000494426 ATAD2BQ9ULI0 1458 aa43.89■■■■■ 4.62
CLIC3-203ENST00000494426 NCAPD3P42695 1498 aa43.84■■■■■ 4.61
CLIC3-203ENST00000494426 SMARCA2P51531 1590 aa43.8■■■■■ 4.6
CLIC3-203ENST00000494426 PEG3Q9GZU2 1588 aa43.72■■■■■ 4.59
CLIC3-203ENST00000494426 HMGXB3Q12766 1538 aa43.61■■■■■ 4.57
CLIC3-203ENST00000494426 BAZ1BQ9UIG0 1483 aaKnown RBP43.49■■■■■ 4.55
CLIC3-203ENST00000494426 WIZO95785 1651 aa43.45■■■■■ 4.55
CLIC3-203ENST00000494426 RSF1Q96T23 1441 aaPredicted RBP43.42■■■■■ 4.54
CLIC3-203ENST00000494426 TOP2AP11388 1531 aaKnown RBP42.94■■■■■ 4.46
CLIC3-203ENST00000494426 NESP48681 1621 aa42.8■■■■■ 4.44
CLIC3-203ENST00000494426 LAMC3Q9Y6N6 1575 aa42.65■■■■■ 4.42
CLIC3-203ENST00000494426 CADPSQ9ULU8 1353 aa42.56■■■■■ 4.4
CLIC3-203ENST00000494426 ERCC6Q03468 1493 aa42.49■■■■■ 4.39
CLIC3-203ENST00000494426 CCDC88BA6NC98 1476 aa42.47■■■■■ 4.39
CLIC3-203ENST00000494426 SUPT5HO00267 1087 aaKnown RBP42.37■■■■■ 4.37
CLIC3-203ENST00000494426 CFTRP13569 1480 aa42.34■■■■■ 4.37
CLIC3-203ENST00000494426 PDS5BQ9NTI5 1447 aa42.33■■■■■ 4.37
CLIC3-203ENST00000494426 KIF21AQ7Z4S6 1674 aa42.29■■■■■ 4.36
CLIC3-203ENST00000494426 THOC2Q8NI27 1593 aaKnown RBP42.11■■■■■ 4.33
CLIC3-203ENST00000494426 FANCD2Q9BXW9 1451 aa42.06■■■■■ 4.32
CLIC3-203ENST00000494426 PRDM2Q13029 1718 aa42.03■■■■■ 4.32
CLIC3-203ENST00000494426 CUX2O14529 1486 aa42.03■■■■■ 4.32
CLIC3-203ENST00000494426 CEP164Q9UPV0 1460 aa41.98■■■■■ 4.31
CLIC3-203ENST00000494426 MRC2Q9UBG0 1479 aa41.92■■■■■ 4.3
CLIC3-203ENST00000494426 WDR62O43379 1518 aa41.79■■■■■ 4.28
CLIC3-203ENST00000494426 URB2Q14146 1524 aaKnown RBP41.69■■■■■ 4.26
CLIC3-203ENST00000494426 DNAJC5Q9H3Z4 198 aa41.65■■■■■ 4.26
CLIC3-203ENST00000494426 TOPBP1Q92547 1522 aa41.43■■■■■ 4.22
CLIC3-203ENST00000494426 ABCC8Q09428 1581 aa41.37■■■■■ 4.21
CLIC3-203ENST00000494426 DNMBPQ6XZF7 1577 aa41.37■■■■■ 4.21
CLIC3-203ENST00000494426 CUX1P39880 1505 aa41.17■■■■■ 4.18
CLIC3-203ENST00000494426 IFT140Q96RY7 1462 aa41.11■■■■■ 4.17
CLIC3-203ENST00000494426 POLA1P09884 1462 aaPredicted RBP41.08■■■■■ 4.17
CLIC3-203ENST00000494426 FGD5Q6ZNL6 1462 aa40.99■■■■■ 4.15
CLIC3-203ENST00000494426 TARBP1Q13395 1621 aaKnown RBP40.99■■■■■ 4.15
CLIC3-203ENST00000494426 ZNF608Q9ULD9 1512 aaPredicted RBP40.98■■■■■ 4.15
CLIC3-203ENST00000494426 RAD54L2Q9Y4B4 1467 aa40.93■■■■■ 4.14
CLIC3-203ENST00000494426 SOGA1O94964 1423 aa40.91■■■■■ 4.14
CLIC3-203ENST00000494426 WRNQ14191 1432 aaPredicted RBP eCLIP40.9■■■■■ 4.14
CLIC3-203ENST00000494426 SYNJ1O43426 1573 aa40.84■■■■■ 4.13
CLIC3-203ENST00000494426 BIVM-ERCC5R4GMW8 1640 aa40.83■■■■■ 4.13
CLIC3-203ENST00000494426 TOP2BQ02880 1626 aa40.82■■■■■ 4.12
CLIC3-203ENST00000494426 EIF4G3O43432 1585 aaKnown RBP40.79■■■■■ 4.12
CLIC3-203ENST00000494426 AQRO60306 1485 aaKnown RBP eCLIP40.75■■■■■ 4.11
CLIC3-203ENST00000494426 WDR97A6NE52 1622 aa40.68■■■■■ 4.1
CLIC3-203ENST00000494426 TDRD9Q8NDG6 1382 aaKnown RBP40.68■■■■■ 4.1
CLIC3-203ENST00000494426 ABCA10Q8WWZ4 1543 aa40.6■■■■■ 4.09
CLIC3-203ENST00000494426 ABCA5Q8WWZ7 1642 aa40.45■■■■■ 4.07
CLIC3-203ENST00000494426 GAPVD1Q14C86 1478 aa40.42■■■■■ 4.06
CLIC3-203ENST00000494426 GRIN2BQ13224 1484 aa40.39■■■■■ 4.06
CLIC3-203ENST00000494426 PBRM1Q86U86 1689 aa40.36■■■■■ 4.05
CLIC3-203ENST00000494426 SNAPC4Q5SXM2 1469 aa40.34■■■■■ 4.05
CLIC3-203ENST00000494426 OSCARQ8IYS5 282 aa40.33■■■■■ 4.05
CLIC3-203ENST00000494426 CHD1O14646 1710 aa40.28■■■■■ 4.04
CLIC3-203ENST00000494426 MAGI1Q96QZ7 1491 aaPredicted RBP40.27■■■■■ 4.04
CLIC3-203ENST00000494426 FBLN2P98095 1184 aa40.18■■■■■ 4.02
CLIC3-203ENST00000494426 SYNJ2O15056 1496 aa40.12■■■■■ 4.01
CLIC3-203ENST00000494426 ERICH3Q5RHP9 1530 aa40.1■■■■■ 4.01
CLIC3-203ENST00000494426 CHMP7Q8WUX9 453 aaPredicted RBP40.09■■■■■ 4.01
CLIC3-203ENST00000494426 ADAMTS12P58397 1594 aa40.03■■■■■ 4
CLIC3-203ENST00000494426 KIF27Q86VH2 1401 aa40.01■■■■■ 4
CLIC3-203ENST00000494426 TRIM41Q8WV44 630 aa39.99■■■■□ 3.99
CLIC3-203ENST00000494426 FHAD1B1AJZ9 1412 aa39.95■■■■□ 3.99
CLIC3-203ENST00000494426 IGF1RP08069 1367 aa39.91■■■■□ 3.98
CLIC3-203ENST00000494426 GRIN2AQ12879 1464 aa39.88■■■■□ 3.98
CLIC3-203ENST00000494426 CLASP1Q7Z460 1538 aa39.84■■■■□ 3.97
CLIC3-203ENST00000494426 RUSC2Q8N2Y8 1516 aa39.8■■■■□ 3.96
CLIC3-203ENST00000494426 CUL7Q14999 1698 aa39.74■■■■□ 3.95
CLIC3-203ENST00000494426 CEP170Q5SW79 1584 aa39.72■■■■□ 3.95
CLIC3-203ENST00000494426 NUP160Q12769 1436 aa39.72■■■■□ 3.95
CLIC3-203ENST00000494426 RIMBP3CA6NJZ7 1639 aa39.71■■■■□ 3.95
CLIC3-203ENST00000494426 RIMBP3BA6NNM3 1639 aa39.71■■■■□ 3.95
CLIC3-203ENST00000494426 RIMBP3Q9UFD9 1639 aa39.71■■■■□ 3.95
CLIC3-203ENST00000494426 ARHGEF11O15085 1522 aa39.69■■■■□ 3.94
CLIC3-203ENST00000494426 CARMIL1Q5VZK9 1371 aa39.64■■■■□ 3.94
CLIC3-203ENST00000494426 CHIC1Q5VXU3 224 aa39.63■■■■□ 3.93
CLIC3-203ENST00000494426 SHROOM2Q13796 1616 aa39.43■■■■□ 3.9
CLIC3-203ENST00000494426 ARAP1Q96P48 1450 aa39.4■■■■□ 3.9
CLIC3-203ENST00000494426 RAPGEF2Q9Y4G8 1499 aa39.4■■■■□ 3.9
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms