RNA–Protein interactions for RNA: ENST00000443503.6

CTDSPL-206, Transcript of CTD small phosphatase like, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CTDSPL, Length 4,640 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL-206ENST00000443503 NISCHQ9Y2I1 1504 aa39.65■■■■□ 3.94
CTDSPL-206ENST00000443503 DCAF8L2P0C7V8 631 aa39.53■■■■□ 3.92
CTDSPL-206ENST00000443503 SUPT5HO00267 1087 aaKnown RBP37.96■■■■□ 3.67
CTDSPL-206ENST00000443503 SHROOM4Q9ULL8 1493 aa37.61■■■■□ 3.61
CTDSPL-206ENST00000443503 EHMT2Q96KQ7 1210 aa36.3■■■■□ 3.4
CTDSPL-206ENST00000443503 FAM9AQ8IZU1 332 aaPredicted RBP35.67■■■■□ 3.3
CTDSPL-206ENST00000443503 PCGF6Q9BYE7 350 aa35.33■■■■□ 3.25
CTDSPL-206ENST00000443503 APLP2Q06481 763 aa35.13■■■■□ 3.21
CTDSPL-206ENST00000443503 TRIM41Q8WV44 630 aa35.11■■■■□ 3.21
CTDSPL-206ENST00000443503 TTBK1Q5TCY1 1321 aaPredicted RBP35.04■■■■□ 3.2
CTDSPL-206ENST00000443503 RANGAP1P46060 587 aaPredicted RBP34.67■■■■□ 3.14
CTDSPL-206ENST00000443503 UBTFP17480 764 aaKnown RBP34.44■■■■□ 3.1
CTDSPL-206ENST00000443503 CHIC1Q5VXU3 224 aa34.33■■■■□ 3.09
CTDSPL-206ENST00000443503 CCER1Q8TC90 406 aaPredicted RBP34.32■■■■□ 3.09
CTDSPL-206ENST00000443503 ZEB1P37275 1124 aaPredicted RBP34.28■■■■□ 3.08
CTDSPL-206ENST00000443503 PPARGC1BQ86YN6 1023 aaKnown RBP34.17■■■■□ 3.06
CTDSPL-206ENST00000443503 LOC105371045A0A1W2PR82 267 aa34.14■■■■□ 3.06
CTDSPL-206ENST00000443503 ATP1B4Q9UN42 357 aaPredicted RBP34.08■■■■□ 3.05
CTDSPL-206ENST00000443503 PELP1Q8IZL8 1130 aaKnown RBP34.05■■■■□ 3.04
CTDSPL-206ENST00000443503 TRIM26Q12899 539 aaPredicted RBP33.93■■■■□ 3.02
CTDSPL-206ENST00000443503 CENPBP07199 599 aaPredicted RBP33.75■■■□□ 2.99
CTDSPL-206ENST00000443503 HRCP23327 699 aa33.71■■■□□ 2.99
CTDSPL-206ENST00000443503 ABCC9O60706 1549 aa33.66■■■□□ 2.98
CTDSPL-206ENST00000443503 PABPN1Q86U42 306 aaKnown RBP eCLIP33.37■■■□□ 2.93
CTDSPL-206ENST00000443503 YTHDC1Q96MU7 727 aaKnown RBP33.34■■■□□ 2.93
CTDSPL-206ENST00000443503 ITGAEP38570 1179 aa33.27■■■□□ 2.92
CTDSPL-206ENST00000443503 HNRNPUL2Q1KMD3 747 aaKnown RBP33.24■■■□□ 2.91
CTDSPL-206ENST00000443503 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.02■■■□□ 2.88
CTDSPL-206ENST00000443503 ZCCHC6Q5VYS8 1495 aaKnown RBP32.92■■■□□ 2.86
CTDSPL-206ENST00000443503 NEFLP07196 543 aa32.81■■■□□ 2.84
CTDSPL-206ENST00000443503 ERICH6Q7L0X2 663 aa32.6■■■□□ 2.81
CTDSPL-206ENST00000443503 DIEXFQ68CQ4 756 aaKnown RBP32.52■■■□□ 2.8
CTDSPL-206ENST00000443503 SCRIBQ14160 1630 aa32.51■■■□□ 2.8
CTDSPL-206ENST00000443503 POLR3GLQ9BT43 218 aa32.47■■■□□ 2.79
CTDSPL-206ENST00000443503 FAM50AQ14320 339 aaKnown RBP32.46■■■□□ 2.79
CTDSPL-206ENST00000443503 CSRNP3Q8WYN3 585 aa32.46■■■□□ 2.79
CTDSPL-206ENST00000443503 CCDC180Q9P1Z9 1646 aa32.38■■■□□ 2.77
CTDSPL-206ENST00000443503 MYT1LQ9UL68 1186 aa32.37■■■□□ 2.77
CTDSPL-206ENST00000443503 CNGB1Q14028 1251 aaPredicted RBP32.3■■■□□ 2.76
CTDSPL-206ENST00000443503 NEUROD1Q13562 356 aa32.15■■■□□ 2.74
CTDSPL-206ENST00000443503 TRIM52Q96A61 297 aa32.09■■■□□ 2.73
CTDSPL-206ENST00000443503 P3H3Q8IVL6 736 aa32.07■■■□□ 2.72
CTDSPL-206ENST00000443503 DCAF1Q9Y4B6 1507 aa31.96■■■□□ 2.71
CTDSPL-206ENST00000443503 ZNF316A6NFI3 1004 aaPredicted RBP31.91■■■□□ 2.7
CTDSPL-206ENST00000443503 FBLN2P98095 1184 aa31.91■■■□□ 2.7
CTDSPL-206ENST00000443503 RSF1Q96T23 1441 aaPredicted RBP31.84■■■□□ 2.69
CTDSPL-206ENST00000443503 MYO15BQ96JP2 1530 aa31.81■■■□□ 2.68
CTDSPL-206ENST00000443503 ARID3CA6NKF2 412 aa31.8■■■□□ 2.68
CTDSPL-206ENST00000443503 GTF3C3Q9Y5Q9 886 aa31.74■■■□□ 2.67
CTDSPL-206ENST00000443503 ZNF326Q5BKZ1 582 aaKnown RBP31.68■■■□□ 2.66
CTDSPL-206ENST00000443503 ANP32CO43423 234 aa31.6■■■□□ 2.65
CTDSPL-206ENST00000443503 MYT1Q01538 1121 aa31.6■■■□□ 2.65
CTDSPL-206ENST00000443503 SLC4A1APQ9BWU0 796 aaKnown RBP31.59■■■□□ 2.65
CTDSPL-206ENST00000443503 RB1CC1Q8TDY2 1594 aa31.52■■■□□ 2.64
CTDSPL-206ENST00000443503 BCANQ96GW7 911 aa31.49■■■□□ 2.63
CTDSPL-206ENST00000443503 ACIN1Q9UKV3 1341 aaKnown RBP31.44■■■□□ 2.62
CTDSPL-206ENST00000443503 DAXXQ9UER7 740 aaPredicted RBP31.42■■■□□ 2.62
CTDSPL-206ENST00000443503 ZNF777Q9ULD5 760 aaPredicted RBP31.42■■■□□ 2.62
CTDSPL-206ENST00000443503 NACADO15069 1562 aa31.4■■■□□ 2.62
CTDSPL-206ENST00000443503 CLIP1P30622 1438 aa31.34■■■□□ 2.61
CTDSPL-206ENST00000443503 CDK11AQ9UQ88 783 aaPredicted RBP31.33■■■□□ 2.61
CTDSPL-206ENST00000443503 CECR2Q9BXF3 1484 aa31.26■■■□□ 2.6
CTDSPL-206ENST00000443503 CEP162Q5TB80 1403 aa31.22■■■□□ 2.59
CTDSPL-206ENST00000443503 WRNQ14191 1432 aaPredicted RBP eCLIP31.2■■■□□ 2.59
CTDSPL-206ENST00000443503 EEA1Q15075 1411 aa31.19■■■□□ 2.58
CTDSPL-206ENST00000443503 TONSLQ96HA7 1378 aa31.18■■■□□ 2.58
CTDSPL-206ENST00000443503 CHIC2Q9UKJ5 165 aa31.13■■■□□ 2.57
CTDSPL-206ENST00000443503 GOLGA3Q08378 1498 aa31.12■■■□□ 2.57
CTDSPL-206ENST00000443503 CLSPNQ9HAW4 1339 aa31.1■■■□□ 2.57
CTDSPL-206ENST00000443503 DDX10Q13206 875 aaKnown RBP31.1■■■□□ 2.57
CTDSPL-206ENST00000443503 BAZ1BQ9UIG0 1483 aaKnown RBP31.07■■■□□ 2.56
CTDSPL-206ENST00000443503 BAZ1AQ9NRL2 1556 aaPredicted RBP31.03■■■□□ 2.56
CTDSPL-206ENST00000443503 MTUS2Q5JR59 1369 aa31.02■■■□□ 2.56
CTDSPL-206ENST00000443503 TNIKQ9UKE5 1360 aa31■■■□□ 2.55
CTDSPL-206ENST00000443503 MIER1Q8N108 512 aa30.87■■■□□ 2.53
CTDSPL-206ENST00000443503 RTL5Q5HYW3 569 aaPredicted RBP30.85■■■□□ 2.53
CTDSPL-206ENST00000443503 CEP164Q9UPV0 1460 aa30.85■■■□□ 2.53
CTDSPL-206ENST00000443503 KIF27Q86VH2 1401 aa30.84■■■□□ 2.53
CTDSPL-206ENST00000443503 MROH2BQ7Z745 1585 aa30.82■■■□□ 2.52
CTDSPL-206ENST00000443503 HIRIP3Q9BW71 556 aaPredicted RBP30.82■■■□□ 2.52
CTDSPL-206ENST00000443503 HNRNPUQ00839 825 aaKnown RBP eCLIP30.81■■■□□ 2.526e-6■□□□□ 10.9
CTDSPL-206ENST00000443503 CHMP7Q8WUX9 453 aaPredicted RBP30.81■■■□□ 2.52
CTDSPL-206ENST00000443503 SOGA1O94964 1423 aa30.78■■■□□ 2.52
CTDSPL-206ENST00000443503 FKBP8Q14318 412 aa30.78■■■□□ 2.52
CTDSPL-206ENST00000443503 RRP7BPQ9NSQ0 103 aa30.75■■■□□ 2.51
CTDSPL-206ENST00000443503 FAM9BQ8IZU0 186 aa30.73■■■□□ 2.51
CTDSPL-206ENST00000443503 TSPY4P0CV99 314 aa30.72■■■□□ 2.51
CTDSPL-206ENST00000443503 TSPY10P0CW01 314 aa30.72■■■□□ 2.51
CTDSPL-206ENST00000443503 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.7■■■□□ 2.514e-9■□□□□ 9.6
CTDSPL-206ENST00000443503 CHGAP10645 457 aaKnown RBP30.65■■■□□ 2.5
CTDSPL-206ENST00000443503 SCAF1Q9H7N4 1312 aaKnown RBP30.63■■■□□ 2.49
CTDSPL-206ENST00000443503 CCDC88BA6NC98 1476 aa30.61■■■□□ 2.49
CTDSPL-206ENST00000443503 KDM2AQ9Y2K7 1162 aa30.61■■■□□ 2.49
CTDSPL-206ENST00000443503 CANXP27824 592 aaKnown RBP30.6■■■□□ 2.49
CTDSPL-206ENST00000443503 NPM1P06748 294 aaKnown RBP eCLIP30.54■■■□□ 2.48
CTDSPL-206ENST00000443503 SALL2Q9Y467 1007 aaPredicted RBP30.53■■■□□ 2.48
CTDSPL-206ENST00000443503 ABCC8Q09428 1581 aa30.53■■■□□ 2.48
CTDSPL-206ENST00000443503 MRS2Q9HD23 443 aa30.5■■■□□ 2.47
CTDSPL-206ENST00000443503 EIF4G2P78344 907 aaKnown RBP eCLIP30.49■■■□□ 2.478e-7■■■■■ 29.1
CTDSPL-206ENST00000443503 TMC1Q8TDI8 760 aa30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms