Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 AC009093.7-201ENST00000623853 1223 ntBASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC28BQ9BUN5 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 SDHAP3-202ENST00000515467 728 ntBASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AL512361.1-201ENST00000554200 418 ntBASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AP001059.3-201ENST00000619053 235 ntBASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AC004461.2-201ENST00000629517 803 ntBASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 AC093525.8-201ENST00000624099 1342 ntBASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 Z82170.1-201ENST00000625081 3192 ntBASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 BEND3P3-201ENST00000611030 2440 ntBASIC14.6□□□□□ -0.07
CCDC28BQ9BUN5 TP73-207ENST00000378290 1831 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 AL645937.2-201ENST00000396808 931 ntBASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC28BQ9BUN5 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms