RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 NISCHQ9Y2I1 1504 aa28.96■■■□□ 2.23
LIG1-203ENST00000536218 CCDC180Q9P1Z9 1646 aa24.68■■□□□ 1.54
LIG1-203ENST00000536218 SHROOM4Q9ULL8 1493 aa24.66■■□□□ 1.54
LIG1-203ENST00000536218 DCAF8L2P0C7V8 631 aa24.56■■□□□ 1.52
LIG1-203ENST00000536218 ZCCHC6Q5VYS8 1495 aaKnown RBP24.37■■□□□ 1.49
LIG1-203ENST00000536218 SUPT5HO00267 1087 aaKnown RBP24.02■■□□□ 1.44
LIG1-203ENST00000536218 DCAF1Q9Y4B6 1507 aa23.65■■□□□ 1.38
LIG1-203ENST00000536218 ABCC9O60706 1549 aa23.54■■□□□ 1.36
LIG1-203ENST00000536218 HRCP23327 699 aa23.37■■□□□ 1.33
LIG1-203ENST00000536218 SCRIBQ14160 1630 aa23.26■■□□□ 1.31
LIG1-203ENST00000536218 PELP1Q8IZL8 1130 aaKnown RBP23.23■■□□□ 1.31
LIG1-203ENST00000536218 MYO15BQ96JP2 1530 aa23.11■■□□□ 1.29
LIG1-203ENST00000536218 PPARGC1BQ86YN6 1023 aaKnown RBP23.06■■□□□ 1.28
LIG1-203ENST00000536218 NACADO15069 1562 aa23.02■■□□□ 1.28
LIG1-203ENST00000536218 CHIC1Q5VXU3 224 aa23■■□□□ 1.27
LIG1-203ENST00000536218 PCGF6Q9BYE7 350 aa22.85■■□□□ 1.25
LIG1-203ENST00000536218 RSF1Q96T23 1441 aaPredicted RBP22.81■■□□□ 1.24
LIG1-203ENST00000536218 RB1CC1Q8TDY2 1594 aa22.77■■□□□ 1.23
LIG1-203ENST00000536218 CECR2Q9BXF3 1484 aa22.71■■□□□ 1.23
LIG1-203ENST00000536218 MROH2BQ7Z745 1585 aa22.54■■□□□ 1.2
LIG1-203ENST00000536218 PABPN1Q86U42 306 aaKnown RBP eCLIP22.53■■□□□ 1.22e-6■■■■□ 25.6
LIG1-203ENST00000536218 SCAF1Q9H7N4 1312 aaKnown RBP22.45■■□□□ 1.18
LIG1-203ENST00000536218 MYT1Q01538 1121 aa22.43■■□□□ 1.18
LIG1-203ENST00000536218 LOC105371045A0A1W2PR82 267 aa22.41■■□□□ 1.18
LIG1-203ENST00000536218 WIZO95785 1651 aa22.37■■□□□ 1.17
LIG1-203ENST00000536218 TRIM41Q8WV44 630 aa22.35■■□□□ 1.17
LIG1-203ENST00000536218 UNC13AQ9UPW8 1703 aa22.31■■□□□ 1.16
LIG1-203ENST00000536218 BAZ1AQ9NRL2 1556 aaPredicted RBP22.27■■□□□ 1.16
LIG1-203ENST00000536218 FAM9AQ8IZU1 332 aaPredicted RBP22.26■■□□□ 1.15
LIG1-203ENST00000536218 EHMT2Q96KQ7 1210 aa22.17■■□□□ 1.14
LIG1-203ENST00000536218 BICRAQ9NZM4 1560 aa22.13■■□□□ 1.13
LIG1-203ENST00000536218 SMARCA4P51532 1647 aa22.12■■□□□ 1.13
LIG1-203ENST00000536218 TOP2AP11388 1531 aaKnown RBP21.96■■□□□ 1.11
LIG1-203ENST00000536218 CCDC88BA6NC98 1476 aa21.96■■□□□ 1.11
LIG1-203ENST00000536218 SMARCA2P51531 1590 aa21.84■■□□□ 1.09
LIG1-203ENST00000536218 TRIM26Q12899 539 aaPredicted RBP21.79■■□□□ 1.08
LIG1-203ENST00000536218 ABCC8Q09428 1581 aa21.78■■□□□ 1.08
LIG1-203ENST00000536218 ZEB1P37275 1124 aaPredicted RBP21.73■■□□□ 1.07
LIG1-203ENST00000536218 ATAD2BQ9ULI0 1458 aa21.73■■□□□ 1.07
LIG1-203ENST00000536218 ACIN1Q9UKV3 1341 aaKnown RBP21.72■■□□□ 1.07
LIG1-203ENST00000536218 EIF4G1Q04637 1599 aaKnown RBP21.72■■□□□ 1.07
LIG1-203ENST00000536218 NEUROD1Q13562 356 aa21.69■■□□□ 1.06
LIG1-203ENST00000536218 GTF3C3Q9Y5Q9 886 aa21.67■■□□□ 1.06
LIG1-203ENST00000536218 BAZ1BQ9UIG0 1483 aaKnown RBP21.67■■□□□ 1.06
LIG1-203ENST00000536218 PEG3Q9GZU2 1588 aa21.62■■□□□ 1.05
LIG1-203ENST00000536218 SOGA1O94964 1423 aa21.53■■□□□ 1.04
LIG1-203ENST00000536218 WRNQ14191 1432 aaPredicted RBP eCLIP21.47■■□□□ 1.03
LIG1-203ENST00000536218 RUSC2Q8N2Y8 1516 aa21.44■■□□□ 1.02
LIG1-203ENST00000536218 CENPBP07199 599 aaPredicted RBP21.44■■□□□ 1.02
LIG1-203ENST00000536218 CSRNP3Q8WYN3 585 aa21.42■■□□□ 1.02
LIG1-203ENST00000536218 UBTFP17480 764 aaKnown RBP21.4■■□□□ 1.02
LIG1-203ENST00000536218 NCAPD3P42695 1498 aa21.35■■□□□ 1.01
LIG1-203ENST00000536218 TTBK1Q5TCY1 1321 aaPredicted RBP21.31■■□□□ 1
LIG1-203ENST00000536218 SYNJ1O43426 1573 aa21.3■■□□□ 1
LIG1-203ENST00000536218 HMGXB3Q12766 1538 aa21.23■□□□□ 0.99
LIG1-203ENST00000536218 EEA1Q15075 1411 aa21.22■□□□□ 0.99
LIG1-203ENST00000536218 RANGAP1P46060 587 aaPredicted RBP21.22■□□□□ 0.99
LIG1-203ENST00000536218 CEP162Q5TB80 1403 aa21.19■□□□□ 0.98
LIG1-203ENST00000536218 TNIKQ9UKE5 1360 aa21.16■□□□□ 0.98
LIG1-203ENST00000536218 DIEXFQ68CQ4 756 aaKnown RBP21.15■□□□□ 0.98
LIG1-203ENST00000536218 BCL11AQ9H165 835 aa21.11■□□□□ 0.97
LIG1-203ENST00000536218 GOLGA3Q08378 1498 aa21.11■□□□□ 0.97
LIG1-203ENST00000536218 YTHDC1Q96MU7 727 aaKnown RBP21.08■□□□□ 0.96
LIG1-203ENST00000536218 CC2D2AQ9P2K1 1620 aa21.06■□□□□ 0.96
LIG1-203ENST00000536218 CFTRP13569 1480 aa21.06■□□□□ 0.96
LIG1-203ENST00000536218 TOP2BQ02880 1626 aa21.03■□□□□ 0.96
LIG1-203ENST00000536218 CEP164Q9UPV0 1460 aa21.03■□□□□ 0.96
LIG1-203ENST00000536218 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.99■□□□□ 0.95
LIG1-203ENST00000536218 CUX1P39880 1505 aa20.99■□□□□ 0.95
LIG1-203ENST00000536218 RAPGEF2Q9Y4G8 1499 aa20.99■□□□□ 0.95
LIG1-203ENST00000536218 CADPSQ9ULU8 1353 aa20.99■□□□□ 0.95
LIG1-203ENST00000536218 CCER1Q8TC90 406 aaPredicted RBP20.97■□□□□ 0.95
LIG1-203ENST00000536218 CLIP1P30622 1438 aa20.92■□□□□ 0.94
LIG1-203ENST00000536218 BIVM-ERCC5R4GMW8 1640 aa20.91■□□□□ 0.94
LIG1-203ENST00000536218 KIF21BO75037 1637 aa20.89■□□□□ 0.94
LIG1-203ENST00000536218 DNAJC5BQ9UF47 199 aa20.87■□□□□ 0.93
LIG1-203ENST00000536218 KIF27Q86VH2 1401 aa20.85■□□□□ 0.93
LIG1-203ENST00000536218 APLP2Q06481 763 aa20.82■□□□□ 0.92
LIG1-203ENST00000536218 NESP48681 1621 aa20.81■□□□□ 0.92
LIG1-203ENST00000536218 CUX2O14529 1486 aa20.78■□□□□ 0.92
LIG1-203ENST00000536218 FANCD2Q9BXW9 1451 aa20.77■□□□□ 0.92
LIG1-203ENST00000536218 PRXQ9BXM0 1461 aa20.76■□□□□ 0.91
LIG1-203ENST00000536218 ANP32EQ9BTT0 268 aa20.75■□□□□ 0.91
LIG1-203ENST00000536218 FGD5Q6ZNL6 1462 aa20.73■□□□□ 0.91
LIG1-203ENST00000536218 VPS8Q8N3P4 1428 aa20.71■□□□□ 0.91
LIG1-203ENST00000536218 IGF1RP08069 1367 aa20.68■□□□□ 0.9
LIG1-203ENST00000536218 HNRNPUL2Q1KMD3 747 aaKnown RBP20.68■□□□□ 0.9
LIG1-203ENST00000536218 PRDM2Q13029 1718 aa20.67■□□□□ 0.9
LIG1-203ENST00000536218 ERICH3Q5RHP9 1530 aa20.65■□□□□ 0.9
LIG1-203ENST00000536218 RAD54L2Q9Y4B4 1467 aa20.63■□□□□ 0.89
LIG1-203ENST00000536218 CARMIL1Q5VZK9 1371 aa20.61■□□□□ 0.89
LIG1-203ENST00000536218 PRKCSHP14314 528 aaPredicted RBP20.58■□□□□ 0.89
LIG1-203ENST00000536218 MIER1Q8N108 512 aa20.56■□□□□ 0.88
LIG1-203ENST00000536218 TOPBP1Q92547 1522 aa20.55■□□□□ 0.88
LIG1-203ENST00000536218 ZNF316A6NFI3 1004 aaPredicted RBP20.55■□□□□ 0.88
LIG1-203ENST00000536218 P3H3Q8IVL6 736 aa20.55■□□□□ 0.88
LIG1-203ENST00000536218 ARAP1Q96P48 1450 aa20.55■□□□□ 0.88
LIG1-203ENST00000536218 KANK4Q5T7N3 995 aaPredicted RBP20.54■□□□□ 0.88
LIG1-203ENST00000536218 POLA1P09884 1462 aaPredicted RBP20.53■□□□□ 0.88
LIG1-203ENST00000536218 DNMBPQ6XZF7 1577 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms