RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 DCAF8L2P0C7V8 631 aa26.49■■□□□ 1.83
PCDHA9-202ENST00000532602 NISCHQ9Y2I1 1504 aa25.31■■□□□ 1.64
PCDHA9-202ENST00000532602 SUPT5HO00267 1087 aaKnown RBP24.81■■□□□ 1.56
PCDHA9-202ENST00000532602 SHROOM4Q9ULL8 1493 aa24.71■■□□□ 1.55
PCDHA9-202ENST00000532602 EHMT2Q96KQ7 1210 aa24.29■■□□□ 1.48
PCDHA9-202ENST00000532602 FAM9AQ8IZU1 332 aaPredicted RBP23.47■■□□□ 1.35
PCDHA9-202ENST00000532602 APLP2Q06481 763 aa23.36■■□□□ 1.33
PCDHA9-202ENST00000532602 TTBK1Q5TCY1 1321 aaPredicted RBP23.34■■□□□ 1.33
PCDHA9-202ENST00000532602 RANGAP1P46060 587 aaPredicted RBP23.24■■□□□ 1.31
PCDHA9-202ENST00000532602 PELP1Q8IZL8 1130 aaKnown RBP23.05■■□□□ 1.28
PCDHA9-202ENST00000532602 ATP1B4Q9UN42 357 aaPredicted RBP22.92■■□□□ 1.26
PCDHA9-202ENST00000532602 TRIM41Q8WV44 630 aa22.86■■□□□ 1.25
PCDHA9-202ENST00000532602 PCGF6Q9BYE7 350 aa22.72■■□□□ 1.23
PCDHA9-202ENST00000532602 UBTFP17480 764 aaKnown RBP22.65■■□□□ 1.22
PCDHA9-202ENST00000532602 PPARGC1BQ86YN6 1023 aaKnown RBP22.45■■□□□ 1.18
PCDHA9-202ENST00000532602 CCER1Q8TC90 406 aaPredicted RBP22.35■■□□□ 1.17
PCDHA9-202ENST00000532602 ABCC9O60706 1549 aa22.28■■□□□ 1.16
PCDHA9-202ENST00000532602 PABPN1Q86U42 306 aaKnown RBP eCLIP22.19■■□□□ 1.14
PCDHA9-202ENST00000532602 ZEB1P37275 1124 aaPredicted RBP22.19■■□□□ 1.14
PCDHA9-202ENST00000532602 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.11■■□□□ 1.13
PCDHA9-202ENST00000532602 HNRNPUL2Q1KMD3 747 aaKnown RBP22.11■■□□□ 1.13
PCDHA9-202ENST00000532602 CENPBP07199 599 aaPredicted RBP22.07■■□□□ 1.12
PCDHA9-202ENST00000532602 MYT1LQ9UL68 1186 aa22.06■■□□□ 1.12
PCDHA9-202ENST00000532602 ITGAEP38570 1179 aa22.04■■□□□ 1.12
PCDHA9-202ENST00000532602 LOC105371045A0A1W2PR82 267 aa21.97■■□□□ 1.11
PCDHA9-202ENST00000532602 ERICH6Q7L0X2 663 aa21.93■■□□□ 1.1
PCDHA9-202ENST00000532602 YTHDC1Q96MU7 727 aaKnown RBP21.85■■□□□ 1.09
PCDHA9-202ENST00000532602 CHIC1Q5VXU3 224 aa21.83■■□□□ 1.09
PCDHA9-202ENST00000532602 NEFLP07196 543 aa21.79■■□□□ 1.08
PCDHA9-202ENST00000532602 POLR3GLQ9BT43 218 aa21.74■■□□□ 1.07
PCDHA9-202ENST00000532602 TRIM26Q12899 539 aaPredicted RBP21.67■■□□□ 1.06
PCDHA9-202ENST00000532602 CNGB1Q14028 1251 aaPredicted RBP21.63■■□□□ 1.05
PCDHA9-202ENST00000532602 FBLN2P98095 1184 aa21.51■■□□□ 1.03
PCDHA9-202ENST00000532602 FAM50AQ14320 339 aaKnown RBP21.44■■□□□ 1.02
PCDHA9-202ENST00000532602 SLC4A1APQ9BWU0 796 aaKnown RBP21.4■■□□□ 1.02
PCDHA9-202ENST00000532602 SCRIBQ14160 1630 aa21.34■■□□□ 1.01
PCDHA9-202ENST00000532602 ARID3CA6NKF2 412 aa21.29■■□□□ 1
PCDHA9-202ENST00000532602 TRIM52Q96A61 297 aa21.27■■□□□ 1
PCDHA9-202ENST00000532602 HRCP23327 699 aa21.24■□□□□ 0.99
PCDHA9-202ENST00000532602 P3H3Q8IVL6 736 aa21.24■□□□□ 0.99
PCDHA9-202ENST00000532602 DAXXQ9UER7 740 aaPredicted RBP21.22■□□□□ 0.99
PCDHA9-202ENST00000532602 NEUROD1Q13562 356 aa21.18■□□□□ 0.98
PCDHA9-202ENST00000532602 ZNF326Q5BKZ1 582 aaKnown RBP21.06■□□□□ 0.96
PCDHA9-202ENST00000532602 ZNF777Q9ULD5 760 aaPredicted RBP20.94■□□□□ 0.94
PCDHA9-202ENST00000532602 ZCCHC6Q5VYS8 1495 aaKnown RBP20.88■□□□□ 0.93
PCDHA9-202ENST00000532602 BCANQ96GW7 911 aa20.86■□□□□ 0.93
PCDHA9-202ENST00000532602 CSRNP3Q8WYN3 585 aa20.86■□□□□ 0.93
PCDHA9-202ENST00000532602 DIEXFQ68CQ4 756 aaKnown RBP20.84■□□□□ 0.93
PCDHA9-202ENST00000532602 MYT1Q01538 1121 aa20.83■□□□□ 0.93
PCDHA9-202ENST00000532602 PLPPR3Q6T4P5 718 aa20.83■□□□□ 0.92
PCDHA9-202ENST00000532602 CCDC180Q9P1Z9 1646 aa20.82■□□□□ 0.92
PCDHA9-202ENST00000532602 CLSPNQ9HAW4 1339 aa20.81■□□□□ 0.92
PCDHA9-202ENST00000532602 SLC24A1O60721 1099 aa20.66■□□□□ 0.9
PCDHA9-202ENST00000532602 ZNF316A6NFI3 1004 aaPredicted RBP20.66■□□□□ 0.9
PCDHA9-202ENST00000532602 CDK11AQ9UQ88 783 aaPredicted RBP20.63■□□□□ 0.89
PCDHA9-202ENST00000532602 RB1CC1Q8TDY2 1594 aa20.63■□□□□ 0.89
PCDHA9-202ENST00000532602 ZBTB47Q9UFB7 747 aaPredicted RBP20.63■□□□□ 0.89
PCDHA9-202ENST00000532602 NEFMP07197 916 aa20.59■□□□□ 0.89
PCDHA9-202ENST00000532602 CHGAP10645 457 aaKnown RBP20.57■□□□□ 0.88
PCDHA9-202ENST00000532602 BCL11AQ9H165 835 aa20.57■□□□□ 0.88
PCDHA9-202ENST00000532602 ESF1Q9H501 851 aaKnown RBP20.57■□□□□ 0.88
PCDHA9-202ENST00000532602 ANP32CO43423 234 aa20.56■□□□□ 0.88
PCDHA9-202ENST00000532602 NPM1P06748 294 aaKnown RBP eCLIP20.54■□□□□ 0.88
PCDHA9-202ENST00000532602 RTL5Q5HYW3 569 aaPredicted RBP20.52■□□□□ 0.88
PCDHA9-202ENST00000532602 CHIC2Q9UKJ5 165 aa20.5■□□□□ 0.87
PCDHA9-202ENST00000532602 CHMP7Q8WUX9 453 aaPredicted RBP20.48■□□□□ 0.87
PCDHA9-202ENST00000532602 STAG3Q9UJ98 1225 aa20.48■□□□□ 0.87
PCDHA9-202ENST00000532602 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.47■□□□□ 0.87
PCDHA9-202ENST00000532602 SENP3Q9H4L4 574 aaPredicted RBP20.41■□□□□ 0.86
PCDHA9-202ENST00000532602 CANXP27824 592 aaKnown RBP20.39■□□□□ 0.85
PCDHA9-202ENST00000532602 KCNH8Q96L42 1107 aa20.3■□□□□ 0.84
PCDHA9-202ENST00000532602 NACADO15069 1562 aa20.28■□□□□ 0.84
PCDHA9-202ENST00000532602 BAZ1BQ9UIG0 1483 aaKnown RBP20.28■□□□□ 0.84
PCDHA9-202ENST00000532602 TONSLQ96HA7 1378 aa20.26■□□□□ 0.83
PCDHA9-202ENST00000532602 RSF1Q96T23 1441 aaPredicted RBP20.24■□□□□ 0.83
PCDHA9-202ENST00000532602 KDM2AQ9Y2K7 1162 aa20.24■□□□□ 0.83
PCDHA9-202ENST00000532602 GTF3C3Q9Y5Q9 886 aa20.23■□□□□ 0.83
PCDHA9-202ENST00000532602 MTUS2Q5JR59 1369 aa20.22■□□□□ 0.83
PCDHA9-202ENST00000532602 ERCC6Q03468 1493 aa20.19■□□□□ 0.82
PCDHA9-202ENST00000532602 TSPY4P0CV99 314 aa20.16■□□□□ 0.82
PCDHA9-202ENST00000532602 TSPY10P0CW01 314 aa20.16■□□□□ 0.82
PCDHA9-202ENST00000532602 RRP7BPQ9NSQ0 103 aa20.15■□□□□ 0.82
PCDHA9-202ENST00000532602 SALL2Q9Y467 1007 aaPredicted RBP20.15■□□□□ 0.82
PCDHA9-202ENST00000532602 PLEKHG5O94827 1062 aa20.15■□□□□ 0.82
PCDHA9-202ENST00000532602 CLIP1P30622 1438 aa20.14■□□□□ 0.81
PCDHA9-202ENST00000532602 DDX10Q13206 875 aaKnown RBP20.12■□□□□ 0.81
PCDHA9-202ENST00000532602 SCAF1Q9H7N4 1312 aaKnown RBP20.12■□□□□ 0.81
PCDHA9-202ENST00000532602 DCAF1Q9Y4B6 1507 aa20.1■□□□□ 0.81
PCDHA9-202ENST00000532602 HIRIP3Q9BW71 556 aaPredicted RBP20.1■□□□□ 0.81
PCDHA9-202ENST00000532602 MYO15BQ96JP2 1530 aa20.08■□□□□ 0.81
PCDHA9-202ENST00000532602 FAM9BQ8IZU0 186 aa20.08■□□□□ 0.81
PCDHA9-202ENST00000532602 WRNQ14191 1432 aaPredicted RBP eCLIP20.07■□□□□ 0.8
PCDHA9-202ENST00000532602 CECR2Q9BXF3 1484 aa20.02■□□□□ 0.79
PCDHA9-202ENST00000532602 PLEKHD1A6NEE1 506 aa20.02■□□□□ 0.79
PCDHA9-202ENST00000532602 ZBTB7CA1YPR0 619 aa20.01■□□□□ 0.79
PCDHA9-202ENST00000532602 GOLGA3Q08378 1498 aa20■□□□□ 0.79
PCDHA9-202ENST00000532602 ARID4BQ4LE39 1312 aaPredicted RBP20■□□□□ 0.79
PCDHA9-202ENST00000532602 CEP162Q5TB80 1403 aa19.97■□□□□ 0.79
PCDHA9-202ENST00000532602 HNRNPUQ00839 825 aaKnown RBP eCLIP19.95■□□□□ 0.78
PCDHA9-202ENST00000532602 RGL3Q3MIN7 710 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms