RNA–Protein interactions for RNA: ENST00000261674.8

SFSWAP-201, Transcript of splicing factor SWAP, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,246 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-201ENST00000261674 NISCHQ9Y2I1 1504 aa29.92■■■□□ 2.38
SFSWAP-201ENST00000261674 DCAF8L2P0C7V8 631 aa26.1■■□□□ 1.77
SFSWAP-201ENST00000261674 CCDC180Q9P1Z9 1646 aa25.6■■□□□ 1.69
SFSWAP-201ENST00000261674 SHROOM4Q9ULL8 1493 aa25.46■■□□□ 1.67
SFSWAP-201ENST00000261674 ABCC9O60706 1549 aa25.42■■□□□ 1.66
SFSWAP-201ENST00000261674 SUPT5HO00267 1087 aaKnown RBP25.07■■□□□ 1.6
SFSWAP-201ENST00000261674 ZCCHC6Q5VYS8 1495 aaKnown RBP25.01■■□□□ 1.59
SFSWAP-201ENST00000261674 SCRIBQ14160 1630 aa24.36■■□□□ 1.49
SFSWAP-201ENST00000261674 PABPN1Q86U42 306 aaKnown RBP eCLIP24.32■■□□□ 1.487e-7■■□□□ 12.9
SFSWAP-201ENST00000261674 DCAF1Q9Y4B6 1507 aa24.22■■□□□ 1.47
SFSWAP-201ENST00000261674 CHIC1Q5VXU3 224 aa24.12■■□□□ 1.45
SFSWAP-201ENST00000261674 NACADO15069 1562 aa24.12■■□□□ 1.45
SFSWAP-201ENST00000261674 RB1CC1Q8TDY2 1594 aa24.06■■□□□ 1.44
SFSWAP-201ENST00000261674 PCGF6Q9BYE7 350 aa23.95■■□□□ 1.43
SFSWAP-201ENST00000261674 MYO15BQ96JP2 1530 aa23.94■■□□□ 1.42
SFSWAP-201ENST00000261674 HRCP23327 699 aa23.8■■□□□ 1.4
SFSWAP-201ENST00000261674 LOC105371045A0A1W2PR82 267 aa23.72■■□□□ 1.39
SFSWAP-201ENST00000261674 CECR2Q9BXF3 1484 aa23.67■■□□□ 1.38
SFSWAP-201ENST00000261674 PPARGC1BQ86YN6 1023 aaKnown RBP23.61■■□□□ 1.37
SFSWAP-201ENST00000261674 UNC13AQ9UPW8 1703 aa23.53■■□□□ 1.36
SFSWAP-201ENST00000261674 BICRAQ9NZM4 1560 aa23.41■■□□□ 1.34
SFSWAP-201ENST00000261674 RSF1Q96T23 1441 aaPredicted RBP23.4■■□□□ 1.34
SFSWAP-201ENST00000261674 EHMT2Q96KQ7 1210 aa23.36■■□□□ 1.33
SFSWAP-201ENST00000261674 MROH2BQ7Z745 1585 aa23.35■■□□□ 1.33
SFSWAP-201ENST00000261674 FAM9AQ8IZU1 332 aaPredicted RBP23.29■■□□□ 1.32
SFSWAP-201ENST00000261674 WIZO95785 1651 aa23.14■■□□□ 1.3
SFSWAP-201ENST00000261674 TRIM41Q8WV44 630 aa23.14■■□□□ 1.29
SFSWAP-201ENST00000261674 TRIM26Q12899 539 aaPredicted RBP23.13■■□□□ 1.29
SFSWAP-201ENST00000261674 BAZ1AQ9NRL2 1556 aaPredicted RBP23.03■■□□□ 1.28
SFSWAP-201ENST00000261674 SMARCA4P51532 1647 aa22.97■■□□□ 1.27
SFSWAP-201ENST00000261674 DNAJC5BQ9UF47 199 aa22.87■■□□□ 1.25
SFSWAP-201ENST00000261674 EIF4G1Q04637 1599 aaKnown RBP22.81■■□□□ 1.24
SFSWAP-201ENST00000261674 ATAD2BQ9ULI0 1458 aa22.78■■□□□ 1.24
SFSWAP-201ENST00000261674 BAZ1BQ9UIG0 1483 aaKnown RBP22.72■■□□□ 1.23
SFSWAP-201ENST00000261674 CCDC88BA6NC98 1476 aa22.68■■□□□ 1.22
SFSWAP-201ENST00000261674 ZEB1P37275 1124 aaPredicted RBP22.63■■□□□ 1.21
SFSWAP-201ENST00000261674 TTBK1Q5TCY1 1321 aaPredicted RBP22.6■■□□□ 1.21
SFSWAP-201ENST00000261674 TOP2AP11388 1531 aaKnown RBP22.59■■□□□ 1.21
SFSWAP-201ENST00000261674 CC2D2AQ9P2K1 1620 aa22.58■■□□□ 1.21
SFSWAP-201ENST00000261674 SMARCA2P51531 1590 aa22.52■■□□□ 1.2
SFSWAP-201ENST00000261674 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.45■■□□□ 1.18
SFSWAP-201ENST00000261674 NCAPD3P42695 1498 aa22.42■■□□□ 1.18
SFSWAP-201ENST00000261674 CCER1Q8TC90 406 aaPredicted RBP22.38■■□□□ 1.17
SFSWAP-201ENST00000261674 ABCC8Q09428 1581 aa22.38■■□□□ 1.17
SFSWAP-201ENST00000261674 PEG3Q9GZU2 1588 aa22.35■■□□□ 1.17
SFSWAP-201ENST00000261674 NESP48681 1621 aa22.24■■□□□ 1.15
SFSWAP-201ENST00000261674 SCAF1Q9H7N4 1312 aaKnown RBP22.19■■□□□ 1.14
SFSWAP-201ENST00000261674 HMGXB3Q12766 1538 aa22.18■■□□□ 1.14
SFSWAP-201ENST00000261674 RANGAP1P46060 587 aaPredicted RBP22.14■■□□□ 1.13
SFSWAP-201ENST00000261674 UBTFP17480 764 aaKnown RBP22.14■■□□□ 1.13
SFSWAP-201ENST00000261674 CADPSQ9ULU8 1353 aa22.09■■□□□ 1.13
SFSWAP-201ENST00000261674 WRNQ14191 1432 aaPredicted RBP eCLIP22.06■■□□□ 1.129e-6■■■■■ 50.1
SFSWAP-201ENST00000261674 SOGA1O94964 1423 aa22.01■■□□□ 1.11
SFSWAP-201ENST00000261674 RUSC2Q8N2Y8 1516 aa21.97■■□□□ 1.11
SFSWAP-201ENST00000261674 CFTRP13569 1480 aa21.97■■□□□ 1.11
SFSWAP-201ENST00000261674 DIEXFQ68CQ4 756 aaKnown RBP21.97■■□□□ 1.11
SFSWAP-201ENST00000261674 NEUROD1Q13562 356 aa21.91■■□□□ 1.1
SFSWAP-201ENST00000261674 CSRNP3Q8WYN3 585 aa21.91■■□□□ 1.1
SFSWAP-201ENST00000261674 SYNJ1O43426 1573 aa21.89■■□□□ 1.09
SFSWAP-201ENST00000261674 FANCD2Q9BXW9 1451 aa21.88■■□□□ 1.09
SFSWAP-201ENST00000261674 CEP162Q5TB80 1403 aa21.87■■□□□ 1.09
SFSWAP-201ENST00000261674 HNRNPUL2Q1KMD3 747 aaKnown RBP21.86■■□□□ 1.09
SFSWAP-201ENST00000261674 ACIN1Q9UKV3 1341 aaKnown RBP21.85■■□□□ 1.09
SFSWAP-201ENST00000261674 YTHDC1Q96MU7 727 aaKnown RBP21.79■■□□□ 1.08
SFSWAP-201ENST00000261674 PELP1Q8IZL8 1130 aaKnown RBP21.79■■□□□ 1.08
SFSWAP-201ENST00000261674 GTF3C3Q9Y5Q9 886 aa21.78■■□□□ 1.08
SFSWAP-201ENST00000261674 CENPBP07199 599 aaPredicted RBP21.76■■□□□ 1.07
SFSWAP-201ENST00000261674 CUX1P39880 1505 aa21.76■■□□□ 1.07
SFSWAP-201ENST00000261674 ERCC6Q03468 1493 aa21.71■■□□□ 1.07
SFSWAP-201ENST00000261674 TNIKQ9UKE5 1360 aa21.71■■□□□ 1.07
SFSWAP-201ENST00000261674 RAD54L2Q9Y4B4 1467 aa21.7■■□□□ 1.06
SFSWAP-201ENST00000261674 PDS5BQ9NTI5 1447 aa21.7■■□□□ 1.06
SFSWAP-201ENST00000261674 CEP164Q9UPV0 1460 aa21.68■■□□□ 1.06
SFSWAP-201ENST00000261674 APLP2Q06481 763 aa21.68■■□□□ 1.06
SFSWAP-201ENST00000261674 TDRD9Q8NDG6 1382 aaKnown RBP21.65■■□□□ 1.06
SFSWAP-201ENST00000261674 ZNF316A6NFI3 1004 aaPredicted RBP21.64■■□□□ 1.05
SFSWAP-201ENST00000261674 FGD5Q6ZNL6 1462 aa21.63■■□□□ 1.05
SFSWAP-201ENST00000261674 CUX2O14529 1486 aa21.6■■□□□ 1.05
SFSWAP-201ENST00000261674 URB2Q14146 1524 aaKnown RBP21.58■■□□□ 1.04
SFSWAP-201ENST00000261674 LAMC3Q9Y6N6 1575 aa21.56■■□□□ 1.04
SFSWAP-201ENST00000261674 TOP2BQ02880 1626 aa21.56■■□□□ 1.04
SFSWAP-201ENST00000261674 TOPBP1Q92547 1522 aa21.54■■□□□ 1.04
SFSWAP-201ENST00000261674 KIF21AQ7Z4S6 1674 aa21.54■■□□□ 1.04
SFSWAP-201ENST00000261674 FBLN2P98095 1184 aa21.53■■□□□ 1.04
SFSWAP-201ENST00000261674 GOLGA3Q08378 1498 aa21.53■■□□□ 1.04
SFSWAP-201ENST00000261674 EEA1Q15075 1411 aa21.51■■□□□ 1.03
SFSWAP-201ENST00000261674 POLA1P09884 1462 aaPredicted RBP21.49■■□□□ 1.03
SFSWAP-201ENST00000261674 P3H3Q8IVL6 736 aa21.49■■□□□ 1.03
SFSWAP-201ENST00000261674 MIER1Q8N108 512 aa21.48■■□□□ 1.03
SFSWAP-201ENST00000261674 KIF27Q86VH2 1401 aa21.46■■□□□ 1.03
SFSWAP-201ENST00000261674 CLIP1P30622 1438 aa21.45■■□□□ 1.02
SFSWAP-201ENST00000261674 RAPGEF2Q9Y4G8 1499 aa21.44■■□□□ 1.02
SFSWAP-201ENST00000261674 AQRO60306 1485 aaKnown RBP eCLIP21.43■■□□□ 1.027e-7■■■■□ 22.4
SFSWAP-201ENST00000261674 IGF1RP08069 1367 aa21.38■■□□□ 1.01
SFSWAP-201ENST00000261674 BIVM-ERCC5R4GMW8 1640 aa21.38■■□□□ 1.01
SFSWAP-201ENST00000261674 DNMBPQ6XZF7 1577 aa21.38■■□□□ 1.01
SFSWAP-201ENST00000261674 ATP1B4Q9UN42 357 aaPredicted RBP21.37■■□□□ 1.01
SFSWAP-201ENST00000261674 MRC2Q9UBG0 1479 aa21.36■■□□□ 1.01
SFSWAP-201ENST00000261674 PRDM2Q13029 1718 aa21.33■■□□□ 1.01
SFSWAP-201ENST00000261674 ZNF608Q9ULD9 1512 aaPredicted RBP21.33■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms