Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.44□□□□□ -0.14e-7■■■■■ 86.2
SF3B1O75533 ACSS2-221ENST00000493250 693 ntTSL 214.43□□□□□ -0.14e-7■■■■■ 86.2
SF3B1O75533 LETM1-204ENST00000510940 563 ntTSL 214.4□□□□□ -0.16e-6■■■■■ 86.2
SF3B1O75533 CCNL1-212ENST00000470121 1889 ntTSL 1 (best)14.38□□□□□ -0.113e-8■■■■■ 86.2
SF3B1O75533 MTG1-203ENST00000460848 2730 ntTSL 214.35□□□□□ -0.114e-7■■■■■ 86.2
SF3B1O75533 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.125e-6■■■■■ 86.2
SF3B1O75533 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.125e-6■■■■■ 86.2
SF3B1O75533 PLCG1-208ENST00000477870 1051 ntTSL 214.24□□□□□ -0.134e-7■■■■■ 86.2
SF3B1O75533 SORD-206ENST00000559562 864 ntTSL 514.19□□□□□ -0.144e-7■■■■■ 86.2
SF3B1O75533 NEDD8-208ENST00000560427 654 ntTSL 214.14□□□□□ -0.154e-7■■■■■ 86.2
SF3B1O75533 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.154e-7■■■■■ 86.2
SF3B1O75533 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.154e-7■■■■■ 86.2
SF3B1O75533 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC14.11□□□□□ -0.154e-7■■■■■ 86.2
SF3B1O75533 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.154e-7■■■■■ 86.2
SF3B1O75533 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC14.11□□□□□ -0.154e-7■■■■■ 86.2
SF3B1O75533 ZNF274-206ENST00000595146 4852 ntTSL 1 (best)14.1□□□□□ -0.154e-7■■■■■ 86.2
SF3B1O75533 DEAF1-204ENST00000525904 797 ntTSL 314.1□□□□□ -0.154e-7■■■■■ 86.2
SF3B1O75533 DEAF1-212ENST00000530813 668 ntTSL 514.1□□□□□ -0.154e-7■■■■■ 86.2
SF3B1O75533 PHYKPL-207ENST00000481436 2025 ntTSL 214.06□□□□□ -0.165e-6■■■■■ 86.2
SF3B1O75533 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.164e-7■■■■■ 86.2
SF3B1O75533 ATP6V0A2-202ENST00000504192 2525 ntTSL 513.95□□□□□ -0.184e-7■■■■■ 86.2
SF3B1O75533 XYLB-203ENST00000427323 1666 ntTSL 2 BASIC13.95□□□□□ -0.184e-7■■■■■ 86.2
SF3B1O75533 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.184e-7■■■■■ 86.2
SF3B1O75533 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.181e-6■■■■■ 86.2
SF3B1O75533 SLC38A5-206ENST00000480105 894 ntTSL 213.91□□□□□ -0.184e-7■■■■■ 86.2
SF3B1O75533 PRPF40A-203ENST00000448428 490 ntTSL 513.9□□□□□ -0.184e-7■■■■■ 86.2
SF3B1O75533 SEC61A1-206ENST00000491668 558 ntTSL 413.9□□□□□ -0.184e-7■■■■■ 86.2
SF3B1O75533 FAM114A2-211ENST00000520667 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.197e-6■■■■■ 86.2
SF3B1O75533 ROR2-204ENST00000493846 370 ntTSL 313.88□□□□□ -0.194e-7■■■■■ 86.2
SF3B1O75533 PANK4-212ENST00000515423 430 ntTSL 313.84□□□□□ -0.194e-7■■■■■ 86.2
SF3B1O75533 PEX5-211ENST00000537873 522 ntTSL 413.84□□□□□ -0.194e-7■■■■■ 86.2
SF3B1O75533 ZSCAN29-207ENST00000568898 1389 ntTSL 1 (best) BASIC13.75□□□□□ -0.214e-7■■■■■ 86.2
SF3B1O75533 CBL-205ENST00000637974 3030 ntAPPRIS ALT2 TSL 513.74□□□□□ -0.214e-7■■■■■ 86.2
SF3B1O75533 AC007388.1-207ENST00000446698 593 ntTSL 513.73□□□□□ -0.214e-7■■■■■ 86.2
SF3B1O75533 CPSF4-208ENST00000452047 687 ntTSL 313.71□□□□□ -0.212e-6■■■■■ 86.2
SF3B1O75533 CCNL1-213ENST00000471044 753 ntTSL 213.67□□□□□ -0.223e-8■■■■■ 86.2
SF3B1O75533 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.233e-13■■■■■ 86.2
SF3B1O75533 PLCG1-220ENST00000617873 583 ntTSL 313.59□□□□□ -0.234e-7■■■■■ 86.2
SF3B1O75533 PEX5-201ENST00000266563 3252 ntTSL 1 (best) BASIC13.58□□□□□ -0.234e-7■■■■■ 86.2
SF3B1O75533 CIPC-202ENST00000554447 596 ntTSL 413.57□□□□□ -0.244e-7■■■■■ 86.2
SF3B1O75533 BAIAP2-222ENST00000575841 509 ntTSL 213.56□□□□□ -0.244e-7■■■■■ 86.2
SF3B1O75533 TAF1B-208ENST00000490432 620 ntTSL 313.55□□□□□ -0.244e-7■■■■■ 86.2
SF3B1O75533 RPL4-211ENST00000566491 593 ntTSL 213.52□□□□□ -0.254e-7■■■■■ 86.2
SF3B1O75533 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.254e-7■■■■■ 86.2
SF3B1O75533 MYADM-204ENST00000391770 3056 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.254e-7■■■■■ 86.2
SF3B1O75533 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC13.49□□□□□ -0.254e-7■■■■■ 86.2
SF3B1O75533 PI4KA-209ENST00000477245 3026 ntTSL 1 (best)13.47□□□□□ -0.254e-7■■■■■ 86.2
SF3B1O75533 BANP-224ENST00000565242 801 ntTSL 313.45□□□□□ -0.264e-7■■■■■ 86.2
SF3B1O75533 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.263e-8■■■■■ 86.2
SF3B1O75533 SNX1-211ENST00000560829 1869 ntTSL 5 BASIC13.41□□□□□ -0.264e-7■■■■■ 86.2
SF3B1O75533 RNF220-202ENST00000355387 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.265e-6■■■■■ 86.2
SF3B1O75533 G3BP2-218ENST00000513927 426 ntTSL 313.37□□□□□ -0.274e-7■■■■■ 86.2
SF3B1O75533 BAIAP2-229ENST00000576995 3689 ntTSL 213.36□□□□□ -0.274e-7■■■■■ 86.2
SF3B1O75533 ATG16L1-201ENST00000347464 2915 ntTSL 1 (best) BASIC13.33□□□□□ -0.284e-7■■■■■ 86.2
SF3B1O75533 ARHGDIA-204ENST00000578351 421 ntTSL 413.33□□□□□ -0.284e-7■■■■■ 86.2
SF3B1O75533 PCK2-212ENST00000560106 782 ntTSL 513.32□□□□□ -0.284e-7■■■■■ 86.2
SF3B1O75533 CCNL1-216ENST00000475298 2362 ntTSL 1 (best)13.32□□□□□ -0.283e-8■■■■■ 86.2
SF3B1O75533 SNX1-201ENST00000261889 3373 ntTSL 2 BASIC13.31□□□□□ -0.284e-7■■■■■ 86.2
SF3B1O75533 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.284e-7■■■■■ 86.2
SF3B1O75533 BRAP-202ENST00000419234 4026 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.284e-7■■■■■ 86.2
SF3B1O75533 LINC00618-201ENST00000435624 700 ntTSL 5 BASIC13.27□□□□□ -0.294e-7■■■■■ 86.2
SF3B1O75533 KDM2B-210ENST00000539394 892 ntTSL 513.25□□□□□ -0.294e-7■■■■■ 86.2
SF3B1O75533 LAMB1-211ENST00000476039 653 ntTSL 213.21□□□□□ -0.294e-7■■■■■ 86.2
SF3B1O75533 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC13.21□□□□□ -0.34e-7■■■■■ 86.2
SF3B1O75533 DVL2-212ENST00000576439 579 ntTSL 313.14□□□□□ -0.313e-8■■■■■ 86.2
SF3B1O75533 NDUFB5-210ENST00000482604 671 ntTSL 513.13□□□□□ -0.317e-7■■■■■ 86.2
SF3B1O75533 RFWD3-202ENST00000571750 3033 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.314e-7■■■■■ 86.2
SF3B1O75533 RPLP0-209ENST00000547211 781 ntTSL 313.1□□□□□ -0.314e-7■■■■■ 86.2
SF3B1O75533 FRMD8-204ENST00000525156 380 ntTSL 513.09□□□□□ -0.314e-7■■■■■ 86.2
SF3B1O75533 ZNF670-201ENST00000366503 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.324e-7■■■■■ 86.2
SF3B1O75533 NUP93-211ENST00000566315 589 ntTSL 413.07□□□□□ -0.324e-7■■■■■ 86.2
SF3B1O75533 USP11-204ENST00000377107 3515 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.324e-7■■■■■ 86.2
SF3B1O75533 SORD-205ENST00000559230 1502 ntTSL 1 (best)13.04□□□□□ -0.324e-7■■■■■ 86.2
SF3B1O75533 BRPF3-203ENST00000441123 5380 ntTSL 1 (best)12.99□□□□□ -0.334e-7■■■■■ 86.2
SF3B1O75533 CTNNA1-237ENST00000523275 536 ntTSL 512.96□□□□□ -0.334e-7■■■■■ 86.2
SF3B1O75533 ZKSCAN3-203ENST00000377255 4799 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.334e-7■■■■■ 86.2
SF3B1O75533 NEDD8-MDP1-203ENST00000604306 681 ntTSL 512.92□□□□□ -0.344e-7■■■■■ 86.2
SF3B1O75533 PEX5-210ENST00000536883 575 ntTSL 412.91□□□□□ -0.344e-7■■■■■ 86.2
SF3B1O75533 FOXRED2-202ENST00000366463 2489 ntTSL 212.88□□□□□ -0.354e-7■■■■■ 86.2
SF3B1O75533 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC12.85□□□□□ -0.354e-7■■■■■ 86.2
SF3B1O75533 AP4B1-214ENST00000489499 1044 ntTSL 212.84□□□□□ -0.354e-7■■■■■ 86.2
SF3B1O75533 PEX5-216ENST00000543974 548 ntTSL 512.8□□□□□ -0.364e-7■■■■■ 86.2
SF3B1O75533 NMT2-202ENST00000378165 2907 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.364e-7■■■■■ 86.2
SF3B1O75533 ATG16L1-202ENST00000373525 2767 ntTSL 5 BASIC12.78□□□□□ -0.364e-7■■■■■ 86.2
SF3B1O75533 KIAA1524-204ENST00000481530 2764 ntTSL 1 (best)12.77□□□□□ -0.374e-7■■■■■ 86.2
SF3B1O75533 ERP44-201ENST00000262455 4854 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.374e-7■■■■■ 86.2
SF3B1O75533 NDUFB5-205ENST00000472629 744 ntTSL 3 BASIC12.76□□□□□ -0.377e-7■■■■■ 86.2
SF3B1O75533 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.374e-7■■■■■ 86.2
SF3B1O75533 RASGEF1A-203ENST00000395809 4104 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.374e-7■■■■■ 86.2
SF3B1O75533 ZKSCAN3-201ENST00000252211 4725 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.384e-7■■■■■ 86.2
SF3B1O75533 AC087632.1-209ENST00000634259 825 ntTSL 512.67□□□□□ -0.384e-7■■■■■ 86.2
SF3B1O75533 NDUFB5-211ENST00000488002 842 ntTSL 212.63□□□□□ -0.397e-7■■■■■ 86.2
SF3B1O75533 CBL-201ENST00000264033 11231 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.44e-7■■■■■ 86.2
SF3B1O75533 PHYKPL-208ENST00000481811 2709 ntTSL 212.56□□□□□ -0.45e-6■■■■■ 86.2
SF3B1O75533 NDUFB5-209ENST00000480374 729 ntTSL 312.55□□□□□ -0.47e-7■■■■■ 86.2
SF3B1O75533 RPL4-214ENST00000567229 2003 ntTSL 512.55□□□□□ -0.44e-7■■■■■ 86.2
SF3B1O75533 ZZEF1-208ENST00000573536 3190 ntTSL 212.55□□□□□ -0.44e-7■■■■■ 86.2
SF3B1O75533 CUL7-201ENST00000265348 5254 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.413e-6■■■■■ 86.2
SF3B1O75533 MYRF-207ENST00000539361 3324 ntTSL 1 (best)12.44□□□□□ -0.424e-7■■■■■ 86.2
SF3B1O75533 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.428e-6■■■■■ 86.2
Retrieved 100 of 46,956 protein–RNA pairs in 1597.2 ms