RNA–Protein interactions for RNA: ENST00000471044.1

CCNL1-213, Transcript of cyclin L1, humanhuman

TSL 2

Gene CCNL1, Length 753 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNL1-213ENST00000471044 AEBP2Q6ZN18 517 aaPredicted RBP36.2■■■■□ 3.39
CCNL1-213ENST00000471044 CHIC1Q5VXU3 224 aa34.62■■■■□ 3.13
CCNL1-213ENST00000471044 NISCHQ9Y2I1 1504 aa30.88■■■□□ 2.53
CCNL1-213ENST00000471044 SENP3Q9H4L4 574 aaPredicted RBP30.8■■■□□ 2.52
CCNL1-213ENST00000471044 PHF23Q9BUL5 403 aaPredicted RBP30.47■■■□□ 2.47
CCNL1-213ENST00000471044 FOXD1Q16676 465 aa28.7■■■□□ 2.18
CCNL1-213ENST00000471044 PLPPR3Q6T4P5 718 aa27.78■■■□□ 2.04
CCNL1-213ENST00000471044 CCDC180Q9P1Z9 1646 aa27.66■■■□□ 2.02
CCNL1-213ENST00000471044 ABCC9O60706 1549 aa27.46■■□□□ 1.99
CCNL1-213ENST00000471044 PPP6R1Q9UPN7 881 aa27.07■■□□□ 1.92
CCNL1-213ENST00000471044 ADRA2BP18089 450 aa26.99■■□□□ 1.91
CCNL1-213ENST00000471044 PIAS4Q8N2W9 510 aaPredicted RBP26.87■■□□□ 1.89
CCNL1-213ENST00000471044 MSH5O43196 834 aa26.73■■□□□ 1.87
CCNL1-213ENST00000471044 DNAJC5BQ9UF47 199 aa26.15■■□□□ 1.78
CCNL1-213ENST00000471044 RB1CC1Q8TDY2 1594 aa26.14■■□□□ 1.78
CCNL1-213ENST00000471044 NACADO15069 1562 aa26.03■■□□□ 1.76
CCNL1-213ENST00000471044 DCAF8L2P0C7V8 631 aa25.84■■□□□ 1.73
CCNL1-213ENST00000471044 MYO15BQ96JP2 1530 aa25.79■■□□□ 1.72
CCNL1-213ENST00000471044 ZCCHC6Q5VYS8 1495 aaKnown RBP25.66■■□□□ 1.7
CCNL1-213ENST00000471044 POTEDQ86YR6 584 aa25.65■■□□□ 1.7
CCNL1-213ENST00000471044 UNC13AQ9UPW8 1703 aa25.64■■□□□ 1.7
CCNL1-213ENST00000471044 DCAF1Q9Y4B6 1507 aa25.57■■□□□ 1.68
CCNL1-213ENST00000471044 PABPN1Q86U42 306 aaKnown RBP eCLIP25.48■■□□□ 1.67
CCNL1-213ENST00000471044 BICRAQ9NZM4 1560 aa25.36■■□□□ 1.65
CCNL1-213ENST00000471044 SCRIBQ14160 1630 aa25.14■■□□□ 1.61
CCNL1-213ENST00000471044 SHROOM4Q9ULL8 1493 aa25.07■■□□□ 1.6
CCNL1-213ENST00000471044 CC2D2AQ9P2K1 1620 aa24.77■■□□□ 1.56
CCNL1-213ENST00000471044 CECR2Q9BXF3 1484 aa24.76■■□□□ 1.55
CCNL1-213ENST00000471044 MAPK8IP2Q13387 824 aaPredicted RBP24.72■■□□□ 1.55
CCNL1-213ENST00000471044 EIF4G1Q04637 1599 aaKnown RBP24.71■■□□□ 1.55
CCNL1-213ENST00000471044 SCAF1Q9H7N4 1312 aaKnown RBP24.67■■□□□ 1.54
CCNL1-213ENST00000471044 DMRT2Q9Y5R5 561 aa24.48■■□□□ 1.51
CCNL1-213ENST00000471044 PPP4R3CPQ6ZMV5 832 aa24.4■■□□□ 1.5
CCNL1-213ENST00000471044 DNAJC5Q9H3Z4 198 aa24.33■■□□□ 1.49
CCNL1-213ENST00000471044 SMARCA4P51532 1647 aa24.05■■□□□ 1.44
CCNL1-213ENST00000471044 NCAPD3P42695 1498 aa24■■□□□ 1.43
CCNL1-213ENST00000471044 BAZ1AQ9NRL2 1556 aaPredicted RBP23.97■■□□□ 1.43
CCNL1-213ENST00000471044 ATAD2BQ9ULI0 1458 aa23.97■■□□□ 1.43
CCNL1-213ENST00000471044 SMARCA2P51531 1590 aa23.93■■□□□ 1.42
CCNL1-213ENST00000471044 HMGXB3Q12766 1538 aa23.88■■□□□ 1.41
CCNL1-213ENST00000471044 CNKSR2Q8WXI2 1034 aa23.87■■□□□ 1.41
CCNL1-213ENST00000471044 PEG3Q9GZU2 1588 aa23.83■■□□□ 1.41
CCNL1-213ENST00000471044 CUX2O14529 1486 aa23.81■■□□□ 1.4
CCNL1-213ENST00000471044 MROH2BQ7Z745 1585 aa23.78■■□□□ 1.4
CCNL1-213ENST00000471044 BAZ1BQ9UIG0 1483 aaKnown RBP23.75■■□□□ 1.39
CCNL1-213ENST00000471044 ERCC6Q03468 1493 aa23.74■■□□□ 1.39
CCNL1-213ENST00000471044 HOXD11P31277 338 aaPredicted RBP23.69■■□□□ 1.38
CCNL1-213ENST00000471044 RNF216Q9NWF9 866 aaPredicted RBP23.59■■□□□ 1.37
CCNL1-213ENST00000471044 WIZO95785 1651 aa23.55■■□□□ 1.36
CCNL1-213ENST00000471044 NCBP3Q53F19 620 aaKnown RBP23.53■■□□□ 1.36
CCNL1-213ENST00000471044 NESP48681 1621 aa23.51■■□□□ 1.35
CCNL1-213ENST00000471044 LAMC3Q9Y6N6 1575 aa23.45■■□□□ 1.34
CCNL1-213ENST00000471044 DCAF8L1A6NGE4 600 aa23.45■■□□□ 1.34
CCNL1-213ENST00000471044 RSF1Q96T23 1441 aaPredicted RBP23.39■■□□□ 1.33
CCNL1-213ENST00000471044 THOC2Q8NI27 1593 aaKnown RBP23.31■■□□□ 1.32
CCNL1-213ENST00000471044 KIF21AQ7Z4S6 1674 aa23.3■■□□□ 1.32
CCNL1-213ENST00000471044 CADPSQ9ULU8 1353 aa23.27■■□□□ 1.32
CCNL1-213ENST00000471044 TOP2AP11388 1531 aaKnown RBP23.26■■□□□ 1.31
CCNL1-213ENST00000471044 PDS5BQ9NTI5 1447 aa23.25■■□□□ 1.31
CCNL1-213ENST00000471044 NPM3O75607 178 aaKnown RBP23.21■■□□□ 1.31
CCNL1-213ENST00000471044 TRIM41Q8WV44 630 aa23.12■■□□□ 1.29
CCNL1-213ENST00000471044 CFTRP13569 1480 aa23.08■■□□□ 1.29
CCNL1-213ENST00000471044 MRC2Q9UBG0 1479 aa23.05■■□□□ 1.28
CCNL1-213ENST00000471044 PRDM2Q13029 1718 aa23.02■■□□□ 1.28
CCNL1-213ENST00000471044 FANCD2Q9BXW9 1451 aa23.01■■□□□ 1.27
CCNL1-213ENST00000471044 CEP164Q9UPV0 1460 aa23.01■■□□□ 1.27
CCNL1-213ENST00000471044 KCNA4P22459 653 aa23.01■■□□□ 1.27
CCNL1-213ENST00000471044 WDR62O43379 1518 aa23■■□□□ 1.27
CCNL1-213ENST00000471044 CCDC88BA6NC98 1476 aa22.97■■□□□ 1.27
CCNL1-213ENST00000471044 RNF39Q9H2S5 420 aa22.85■■□□□ 1.25
CCNL1-213ENST00000471044 URB2Q14146 1524 aaKnown RBP22.81■■□□□ 1.24
CCNL1-213ENST00000471044 CACNB1Q02641 598 aaPredicted RBP22.78■■□□□ 1.24
CCNL1-213ENST00000471044 OSCARQ8IYS5 282 aa22.63■■□□□ 1.21
CCNL1-213ENST00000471044 ABCC8Q09428 1581 aa22.62■■□□□ 1.21
CCNL1-213ENST00000471044 TOPBP1Q92547 1522 aa22.62■■□□□ 1.21
CCNL1-213ENST00000471044 DNMBPQ6XZF7 1577 aa22.59■■□□□ 1.21
CCNL1-213ENST00000471044 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.57■■□□□ 1.21e-8■■■□□ 15.1
CCNL1-213ENST00000471044 IFT140Q96RY7 1462 aa22.54■■□□□ 1.2
CCNL1-213ENST00000471044 C1QBPQ07021 282 aaKnown RBP22.53■■□□□ 1.2
CCNL1-213ENST00000471044 SUPT5HO00267 1087 aaKnown RBP22.51■■□□□ 1.19
CCNL1-213ENST00000471044 ZNF608Q9ULD9 1512 aaPredicted RBP22.46■■□□□ 1.19
CCNL1-213ENST00000471044 RIMBP3CA6NJZ7 1639 aa22.46■■□□□ 1.19
CCNL1-213ENST00000471044 RIMBP3BA6NNM3 1639 aa22.46■■□□□ 1.19
CCNL1-213ENST00000471044 RIMBP3Q9UFD9 1639 aa22.46■■□□□ 1.19
CCNL1-213ENST00000471044 TARBP1Q13395 1621 aaKnown RBP22.42■■□□□ 1.18
CCNL1-213ENST00000471044 EIF4G3O43432 1585 aaKnown RBP22.4■■□□□ 1.18
CCNL1-213ENST00000471044 POLA1P09884 1462 aaPredicted RBP22.4■■□□□ 1.18
CCNL1-213ENST00000471044 CUX1P39880 1505 aa22.33■■□□□ 1.17
CCNL1-213ENST00000471044 ARHGEF11O15085 1522 aa22.31■■□□□ 1.16
CCNL1-213ENST00000471044 FGD5Q6ZNL6 1462 aa22.3■■□□□ 1.16
CCNL1-213ENST00000471044 RAD54L2Q9Y4B4 1467 aa22.29■■□□□ 1.16
CCNL1-213ENST00000471044 SOGA1O94964 1423 aa22.29■■□□□ 1.16
CCNL1-213ENST00000471044 AQRO60306 1485 aaKnown RBP eCLIP22.28■■□□□ 1.167e-10■■■■■ 46.1
CCNL1-213ENST00000471044 WDR97A6NE52 1622 aa22.25■■□□□ 1.15
CCNL1-213ENST00000471044 CHD1O14646 1710 aa22.22■■□□□ 1.15
CCNL1-213ENST00000471044 TDRD9Q8NDG6 1382 aaKnown RBP22.18■■□□□ 1.14
CCNL1-213ENST00000471044 CYB5RLQ6IPT4 315 aa22.17■■□□□ 1.14
CCNL1-213ENST00000471044 U3KPZ7 1027 aaPredicted RBP22.13■■□□□ 1.13
CCNL1-213ENST00000471044 BIVM-ERCC5R4GMW8 1640 aa22.12■■□□□ 1.13
CCNL1-213ENST00000471044 SLC4A2P04920 1241 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms