RNA–Protein interactions for RNA: ENST00000377107.6

USP11-204, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP11, Length 3,515 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-204ENST00000377107 NISCHQ9Y2I1 1504 aa25.8■■□□□ 1.72
USP11-204ENST00000377107 SHROOM4Q9ULL8 1493 aa23.01■■□□□ 1.27
USP11-204ENST00000377107 DCAF8L2P0C7V8 631 aa22.71■■□□□ 1.23
USP11-204ENST00000377107 SUPT5HO00267 1087 aaKnown RBP22.68■■□□□ 1.22
USP11-204ENST00000377107 ZCCHC6Q5VYS8 1495 aaKnown RBP21.72■■□□□ 1.07
USP11-204ENST00000377107 CHIC1Q5VXU3 224 aa21.58■■□□□ 1.05
USP11-204ENST00000377107 CCDC180Q9P1Z9 1646 aa21.48■■□□□ 1.03
USP11-204ENST00000377107 PCGF6Q9BYE7 350 aa21.36■■□□□ 1.01
USP11-204ENST00000377107 MYO15BQ96JP2 1530 aa21.31■■□□□ 1
USP11-204ENST00000377107 LOC105371045A0A1W2PR82 267 aa21.28■■□□□ 1
USP11-204ENST00000377107 EHMT2Q96KQ7 1210 aa21.26■□□□□ 0.99
USP11-204ENST00000377107 FAM9AQ8IZU1 332 aaPredicted RBP21.11■□□□□ 0.97
USP11-204ENST00000377107 HRCP23327 699 aa20.99■□□□□ 0.95
USP11-204ENST00000377107 PPARGC1BQ86YN6 1023 aaKnown RBP20.94■□□□□ 0.94
USP11-204ENST00000377107 TRIM41Q8WV44 630 aa20.89■□□□□ 0.93
USP11-204ENST00000377107 SCRIBQ14160 1630 aa20.82■□□□□ 0.92
USP11-204ENST00000377107 ABCC9O60706 1549 aa20.81■□□□□ 0.92
USP11-204ENST00000377107 DCAF1Q9Y4B6 1507 aa20.75■□□□□ 0.91
USP11-204ENST00000377107 RSF1Q96T23 1441 aaPredicted RBP20.61■□□□□ 0.89
USP11-204ENST00000377107 TRIM26Q12899 539 aaPredicted RBP20.59■□□□□ 0.89
USP11-204ENST00000377107 TTBK1Q5TCY1 1321 aaPredicted RBP20.51■□□□□ 0.87
USP11-204ENST00000377107 CECR2Q9BXF3 1484 aa20.41■□□□□ 0.86
USP11-204ENST00000377107 RB1CC1Q8TDY2 1594 aa20.37■□□□□ 0.85
USP11-204ENST00000377107 PABPN1Q86U42 306 aaKnown RBP eCLIP20.23■□□□□ 0.83
USP11-204ENST00000377107 MROH2BQ7Z745 1585 aa20.21■□□□□ 0.83
USP11-204ENST00000377107 NACADO15069 1562 aa20.1■□□□□ 0.81
USP11-204ENST00000377107 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.1■□□□□ 0.81
USP11-204ENST00000377107 WIZO95785 1651 aa20.07■□□□□ 0.8
USP11-204ENST00000377107 RANGAP1P46060 587 aaPredicted RBP20.07■□□□□ 0.8
USP11-204ENST00000377107 ZEB1P37275 1124 aaPredicted RBP20.07■□□□□ 0.8
USP11-204ENST00000377107 UBTFP17480 764 aaKnown RBP20.06■□□□□ 0.8
USP11-204ENST00000377107 CCER1Q8TC90 406 aaPredicted RBP20.06■□□□□ 0.8
USP11-204ENST00000377107 ABCC8Q09428 1581 aa19.84■□□□□ 0.77
USP11-204ENST00000377107 BAZ1AQ9NRL2 1556 aaPredicted RBP19.8■□□□□ 0.76
USP11-204ENST00000377107 CCDC88BA6NC98 1476 aa19.78■□□□□ 0.76
USP11-204ENST00000377107 CSRNP3Q8WYN3 585 aa19.76■□□□□ 0.75
USP11-204ENST00000377107 SOGA1O94964 1423 aa19.74■□□□□ 0.75
USP11-204ENST00000377107 HNRNPUL2Q1KMD3 747 aaKnown RBP19.71■□□□□ 0.75
USP11-204ENST00000377107 APLP2Q06481 763 aa19.63■□□□□ 0.73
USP11-204ENST00000377107 RUSC2Q8N2Y8 1516 aa19.62■□□□□ 0.73
USP11-204ENST00000377107 CEP162Q5TB80 1403 aa19.62■□□□□ 0.73
USP11-204ENST00000377107 TOP2AP11388 1531 aaKnown RBP19.58■□□□□ 0.73
USP11-204ENST00000377107 SMARCA4P51532 1647 aa19.58■□□□□ 0.72
USP11-204ENST00000377107 DIEXFQ68CQ4 756 aaKnown RBP19.52■□□□□ 0.72
USP11-204ENST00000377107 SMARCA2P51531 1590 aa19.51■□□□□ 0.71
USP11-204ENST00000377107 YTHDC1Q96MU7 727 aaKnown RBP19.49■□□□□ 0.71
USP11-204ENST00000377107 SCAF1Q9H7N4 1312 aaKnown RBP19.48■□□□□ 0.71
USP11-204ENST00000377107 WRNQ14191 1432 aaPredicted RBP eCLIP19.47■□□□□ 0.71
USP11-204ENST00000377107 TNIKQ9UKE5 1360 aa19.45■□□□□ 0.7
USP11-204ENST00000377107 ITGAEP38570 1179 aa19.35■□□□□ 0.69
USP11-204ENST00000377107 GOLGA3Q08378 1498 aa19.34■□□□□ 0.69
USP11-204ENST00000377107 EIF4G1Q04637 1599 aaKnown RBP19.34■□□□□ 0.69
USP11-204ENST00000377107 UNC13AQ9UPW8 1703 aa19.34■□□□□ 0.69
USP11-204ENST00000377107 NEUROD1Q13562 356 aa19.34■□□□□ 0.69
USP11-204ENST00000377107 BAZ1BQ9UIG0 1483 aaKnown RBP19.31■□□□□ 0.68
USP11-204ENST00000377107 CLIP1P30622 1438 aa19.31■□□□□ 0.68
USP11-204ENST00000377107 EEA1Q15075 1411 aa19.29■□□□□ 0.68
USP11-204ENST00000377107 CENPBP07199 599 aaPredicted RBP19.29■□□□□ 0.68
USP11-204ENST00000377107 ATP1B4Q9UN42 357 aaPredicted RBP19.26■□□□□ 0.67
USP11-204ENST00000377107 ACIN1Q9UKV3 1341 aaKnown RBP19.25■□□□□ 0.67
USP11-204ENST00000377107 ZNF316A6NFI3 1004 aaPredicted RBP19.25■□□□□ 0.67
USP11-204ENST00000377107 BICRAQ9NZM4 1560 aa19.24■□□□□ 0.67
USP11-204ENST00000377107 GTF3C3Q9Y5Q9 886 aa19.24■□□□□ 0.67
USP11-204ENST00000377107 ATAD2BQ9ULI0 1458 aa19.23■□□□□ 0.67
USP11-204ENST00000377107 CEP164Q9UPV0 1460 aa19.2■□□□□ 0.66
USP11-204ENST00000377107 RAPGEF2Q9Y4G8 1499 aa19.18■□□□□ 0.66
USP11-204ENST00000377107 SYNJ1O43426 1573 aa19.17■□□□□ 0.66
USP11-204ENST00000377107 MIER1Q8N108 512 aa19.09■□□□□ 0.65
USP11-204ENST00000377107 P3H3Q8IVL6 736 aa19.09■□□□□ 0.65
USP11-204ENST00000377107 KANK4Q5T7N3 995 aaPredicted RBP19.08■□□□□ 0.64
USP11-204ENST00000377107 VPS8Q8N3P4 1428 aa19.05■□□□□ 0.64
USP11-204ENST00000377107 FAM50AQ14320 339 aaKnown RBP18.94■□□□□ 0.62
USP11-204ENST00000377107 PELP1Q8IZL8 1130 aaKnown RBP18.89■□□□□ 0.61
USP11-204ENST00000377107 KIF21BO75037 1637 aa18.89■□□□□ 0.61
USP11-204ENST00000377107 PEG3Q9GZU2 1588 aa18.89■□□□□ 0.61
USP11-204ENST00000377107 KIF27Q86VH2 1401 aa18.88■□□□□ 0.61
USP11-204ENST00000377107 CUX2O14529 1486 aa18.79■□□□□ 0.6
USP11-204ENST00000377107 TOP2BQ02880 1626 aa18.78■□□□□ 0.6
USP11-204ENST00000377107 ARAP1Q96P48 1450 aa18.77■□□□□ 0.6
USP11-204ENST00000377107 CUX1P39880 1505 aa18.76■□□□□ 0.59
USP11-204ENST00000377107 HIRIP3Q9BW71 556 aaPredicted RBP18.74■□□□□ 0.59
USP11-204ENST00000377107 DHX57Q6P158 1386 aaKnown RBP18.73■□□□□ 0.59
USP11-204ENST00000377107 NCAPD3P42695 1498 aa18.72■□□□□ 0.59
USP11-204ENST00000377107 PRXQ9BXM0 1461 aa18.72■□□□□ 0.59
USP11-204ENST00000377107 CCNB3Q8WWL7 1395 aa18.7■□□□□ 0.58
USP11-204ENST00000377107 CARMIL1Q5VZK9 1371 aa18.69■□□□□ 0.58
USP11-204ENST00000377107 SIN3AQ96ST3 1273 aa18.69■□□□□ 0.58
USP11-204ENST00000377107 ARID3CA6NKF2 412 aa18.68■□□□□ 0.58
USP11-204ENST00000377107 IGF1RP08069 1367 aa18.65■□□□□ 0.58
USP11-204ENST00000377107 CFTRP13569 1480 aa18.63■□□□□ 0.57
USP11-204ENST00000377107 ARHGAP35Q9NRY4 1499 aa18.62■□□□□ 0.57
USP11-204ENST00000377107 CADPSQ9ULU8 1353 aa18.62■□□□□ 0.57
USP11-204ENST00000377107 DDX10Q13206 875 aaKnown RBP18.61■□□□□ 0.57
USP11-204ENST00000377107 RAB3GAP2Q9H2M9 1393 aa18.58■□□□□ 0.57
USP11-204ENST00000377107 ERICH3Q5RHP9 1530 aa18.58■□□□□ 0.56
USP11-204ENST00000377107 KCNH8Q96L42 1107 aa18.57■□□□□ 0.56
USP11-204ENST00000377107 FGD5Q6ZNL6 1462 aa18.55■□□□□ 0.56
USP11-204ENST00000377107 BIVM-ERCC5R4GMW8 1640 aa18.55■□□□□ 0.56
USP11-204ENST00000377107 HMGXB3Q12766 1538 aa18.55■□□□□ 0.56
USP11-204ENST00000377107 BCANQ96GW7 911 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms