RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 NISCHQ9Y2I1 1504 aa29.06■■■□□ 2.24
SNX1-211ENST00000560829 CCDC180Q9P1Z9 1646 aa25.25■■□□□ 1.63
SNX1-211ENST00000560829 ZCCHC6Q5VYS8 1495 aaKnown RBP24.45■■□□□ 1.5
SNX1-211ENST00000560829 DCAF1Q9Y4B6 1507 aa24.08■■□□□ 1.44
SNX1-211ENST00000560829 DCAF8L2P0C7V8 631 aa23.84■■□□□ 1.41
SNX1-211ENST00000560829 MYO15BQ96JP2 1530 aa23.76■■□□□ 1.39
SNX1-211ENST00000560829 ABCC9O60706 1549 aa23.74■■□□□ 1.39
SNX1-211ENST00000560829 SHROOM4Q9ULL8 1493 aa23.69■■□□□ 1.38
SNX1-211ENST00000560829 NACADO15069 1562 aa23.51■■□□□ 1.35
SNX1-211ENST00000560829 RB1CC1Q8TDY2 1594 aa23.26■■□□□ 1.31
SNX1-211ENST00000560829 SCRIBQ14160 1630 aa23.19■■□□□ 1.3
SNX1-211ENST00000560829 SUPT5HO00267 1087 aaKnown RBP22.87■■□□□ 1.25
SNX1-211ENST00000560829 UNC13AQ9UPW8 1703 aa22.69■■□□□ 1.22
SNX1-211ENST00000560829 RSF1Q96T23 1441 aaPredicted RBP22.6■■□□□ 1.21
SNX1-211ENST00000560829 BICRAQ9NZM4 1560 aa22.56■■□□□ 1.2
SNX1-211ENST00000560829 CECR2Q9BXF3 1484 aa22.55■■□□□ 1.2
SNX1-211ENST00000560829 MROH2BQ7Z745 1585 aa22.43■■□□□ 1.18
SNX1-211ENST00000560829 BAZ1AQ9NRL2 1556 aaPredicted RBP22.42■■□□□ 1.18
SNX1-211ENST00000560829 PABPN1Q86U42 306 aaKnown RBP eCLIP22.4■■□□□ 1.18
SNX1-211ENST00000560829 SMARCA4P51532 1647 aa22.28■■□□□ 1.16
SNX1-211ENST00000560829 WIZO95785 1651 aa22.2■■□□□ 1.14
SNX1-211ENST00000560829 PEG3Q9GZU2 1588 aa22.06■■□□□ 1.12
SNX1-211ENST00000560829 TOP2AP11388 1531 aaKnown RBP22.04■■□□□ 1.12
SNX1-211ENST00000560829 CHIC1Q5VXU3 224 aa22.03■■□□□ 1.12
SNX1-211ENST00000560829 ATAD2BQ9ULI0 1458 aa21.92■■□□□ 1.1
SNX1-211ENST00000560829 SMARCA2P51531 1590 aa21.89■■□□□ 1.1
SNX1-211ENST00000560829 EIF4G1Q04637 1599 aaKnown RBP21.87■■□□□ 1.09
SNX1-211ENST00000560829 CCDC88BA6NC98 1476 aa21.81■■□□□ 1.08
SNX1-211ENST00000560829 BAZ1BQ9UIG0 1483 aaKnown RBP21.77■■□□□ 1.08
SNX1-211ENST00000560829 NCAPD3P42695 1498 aa21.74■■□□□ 1.07
SNX1-211ENST00000560829 HMGXB3Q12766 1538 aa21.69■■□□□ 1.06
SNX1-211ENST00000560829 TRIM41Q8WV44 630 aa21.53■■□□□ 1.04
SNX1-211ENST00000560829 CC2D2AQ9P2K1 1620 aa21.48■■□□□ 1.03
SNX1-211ENST00000560829 ABCC8Q09428 1581 aa21.34■■□□□ 1.01
SNX1-211ENST00000560829 CFTRP13569 1480 aa21.28■■□□□ 1
SNX1-211ENST00000560829 WRNQ14191 1432 aaPredicted RBP eCLIP21.25■□□□□ 0.99
SNX1-211ENST00000560829 CADPSQ9ULU8 1353 aa21.17■□□□□ 0.98
SNX1-211ENST00000560829 LOC105371045A0A1W2PR82 267 aa21.13■□□□□ 0.97
SNX1-211ENST00000560829 SYNJ1O43426 1573 aa21.13■□□□□ 0.97
SNX1-211ENST00000560829 FAM9AQ8IZU1 332 aaPredicted RBP21.08■□□□□ 0.97
SNX1-211ENST00000560829 TOP2BQ02880 1626 aa21.05■□□□□ 0.96
SNX1-211ENST00000560829 EEA1Q15075 1411 aa21.05■□□□□ 0.96
SNX1-211ENST00000560829 PRDM2Q13029 1718 aa21.05■□□□□ 0.96
SNX1-211ENST00000560829 BIVM-ERCC5R4GMW8 1640 aa21.02■□□□□ 0.95
SNX1-211ENST00000560829 SOGA1O94964 1423 aa21.01■□□□□ 0.95
SNX1-211ENST00000560829 CUX1P39880 1505 aa20.96■□□□□ 0.95
SNX1-211ENST00000560829 LAMC3Q9Y6N6 1575 aa20.93■□□□□ 0.94
SNX1-211ENST00000560829 DNAJC5BQ9UF47 199 aa20.92■□□□□ 0.94
SNX1-211ENST00000560829 FANCD2Q9BXW9 1451 aa20.91■□□□□ 0.94
SNX1-211ENST00000560829 RUSC2Q8N2Y8 1516 aa20.9■□□□□ 0.94
SNX1-211ENST00000560829 CSRNP3Q8WYN3 585 aa20.88■□□□□ 0.93
SNX1-211ENST00000560829 NESP48681 1621 aa20.88■□□□□ 0.93
SNX1-211ENST00000560829 PDS5BQ9NTI5 1447 aa20.78■□□□□ 0.92
SNX1-211ENST00000560829 CEP164Q9UPV0 1460 aa20.76■□□□□ 0.91
SNX1-211ENST00000560829 DNMBPQ6XZF7 1577 aa20.74■□□□□ 0.91
SNX1-211ENST00000560829 GOLGA3Q08378 1498 aa20.73■□□□□ 0.91
SNX1-211ENST00000560829 KIF21BO75037 1637 aa20.72■□□□□ 0.91
SNX1-211ENST00000560829 EHMT2Q96KQ7 1210 aa20.72■□□□□ 0.91
SNX1-211ENST00000560829 FGD5Q6ZNL6 1462 aa20.71■□□□□ 0.91
SNX1-211ENST00000560829 TNIKQ9UKE5 1360 aa20.71■□□□□ 0.91
SNX1-211ENST00000560829 KIF27Q86VH2 1401 aa20.7■□□□□ 0.91
SNX1-211ENST00000560829 TOPBP1Q92547 1522 aa20.69■□□□□ 0.9
SNX1-211ENST00000560829 URB2Q14146 1524 aaKnown RBP20.64■□□□□ 0.89
SNX1-211ENST00000560829 PRXQ9BXM0 1461 aa20.63■□□□□ 0.89
SNX1-211ENST00000560829 POLA1P09884 1462 aaPredicted RBP20.61■□□□□ 0.89
SNX1-211ENST00000560829 CUX2O14529 1486 aa20.6■□□□□ 0.89
SNX1-211ENST00000560829 ERICH3Q5RHP9 1530 aa20.59■□□□□ 0.89
SNX1-211ENST00000560829 RAPGEF2Q9Y4G8 1499 aa20.58■□□□□ 0.88
SNX1-211ENST00000560829 CEP162Q5TB80 1403 aa20.58■□□□□ 0.88
SNX1-211ENST00000560829 KIF21AQ7Z4S6 1674 aa20.58■□□□□ 0.88
SNX1-211ENST00000560829 UBTFP17480 764 aaKnown RBP20.57■□□□□ 0.88
SNX1-211ENST00000560829 ABCA10Q8WWZ4 1543 aa20.57■□□□□ 0.88
SNX1-211ENST00000560829 IGF1RP08069 1367 aa20.52■□□□□ 0.88
SNX1-211ENST00000560829 RAD54L2Q9Y4B4 1467 aa20.52■□□□□ 0.88
SNX1-211ENST00000560829 MRC2Q9UBG0 1479 aa20.5■□□□□ 0.87
SNX1-211ENST00000560829 WDR97A6NE52 1622 aa20.43■□□□□ 0.86
SNX1-211ENST00000560829 CARMIL1Q5VZK9 1371 aa20.4■□□□□ 0.86
SNX1-211ENST00000560829 WDR62O43379 1518 aa20.39■□□□□ 0.86
SNX1-211ENST00000560829 CLIP1P30622 1438 aa20.39■□□□□ 0.85
SNX1-211ENST00000560829 TARBP1Q13395 1621 aaKnown RBP20.37■□□□□ 0.85
SNX1-211ENST00000560829 ABCA5Q8WWZ7 1642 aa20.36■□□□□ 0.85
SNX1-211ENST00000560829 ERCC6Q03468 1493 aa20.33■□□□□ 0.85
SNX1-211ENST00000560829 TDRD9Q8NDG6 1382 aaKnown RBP20.32■□□□□ 0.84
SNX1-211ENST00000560829 GAPVD1Q14C86 1478 aa20.31■□□□□ 0.84
SNX1-211ENST00000560829 CUL7Q14999 1698 aa20.31■□□□□ 0.84
SNX1-211ENST00000560829 TRIM26Q12899 539 aaPredicted RBP20.3■□□□□ 0.84
SNX1-211ENST00000560829 IFT140Q96RY7 1462 aa20.28■□□□□ 0.84
SNX1-211ENST00000560829 PCGF6Q9BYE7 350 aa20.28■□□□□ 0.84
SNX1-211ENST00000560829 THOC2Q8NI27 1593 aaKnown RBP20.27■□□□□ 0.84
SNX1-211ENST00000560829 VPS8Q8N3P4 1428 aa20.25■□□□□ 0.83
SNX1-211ENST00000560829 ARAP1Q96P48 1450 aa20.18■□□□□ 0.82
SNX1-211ENST00000560829 AQRO60306 1485 aaKnown RBP eCLIP20.16■□□□□ 0.827e-7■■■■■ 31.9
SNX1-211ENST00000560829 ARHGAP35Q9NRY4 1499 aa20.16■□□□□ 0.82
SNX1-211ENST00000560829 GRIN2BQ13224 1484 aa20.15■□□□□ 0.82
SNX1-211ENST00000560829 RANGAP1P46060 587 aaPredicted RBP20.13■□□□□ 0.81
SNX1-211ENST00000560829 ZNF608Q9ULD9 1512 aaPredicted RBP20.13■□□□□ 0.81
SNX1-211ENST00000560829 FHAD1B1AJZ9 1412 aa20.12■□□□□ 0.81
SNX1-211ENST00000560829 PBRM1Q86U86 1689 aa20.11■□□□□ 0.81
SNX1-211ENST00000560829 ADAMTS12P58397 1594 aa20.08■□□□□ 0.81
SNX1-211ENST00000560829 PPARGC1BQ86YN6 1023 aaKnown RBP20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms