RNA–Protein interactions for RNA: ENST00000270066.10

SMG9-201, Transcript of SMG9, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG9, Length 5,510 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG9-201ENST00000270066 DCAF8L2P0C7V8 631 aa23.31■■□□□ 1.32
SMG9-201ENST00000270066 NISCHQ9Y2I1 1504 aa22.69■■□□□ 1.22
SMG9-201ENST00000270066 SUPT5HO00267 1087 aaKnown RBP21.93■■□□□ 1.1
SMG9-201ENST00000270066 SHROOM4Q9ULL8 1493 aa21.66■■□□□ 1.06
SMG9-201ENST00000270066 EHMT2Q96KQ7 1210 aa21.07■□□□□ 0.96
SMG9-201ENST00000270066 APLP2Q06481 763 aa20.98■□□□□ 0.95
SMG9-201ENST00000270066 FAM9AQ8IZU1 332 aaPredicted RBP20.9■□□□□ 0.94
SMG9-201ENST00000270066 PELP1Q8IZL8 1130 aaKnown RBP20.5■□□□□ 0.87
SMG9-201ENST00000270066 TRIM41Q8WV44 630 aa20.45■□□□□ 0.86
SMG9-201ENST00000270066 TTBK1Q5TCY1 1321 aaPredicted RBP20.35■□□□□ 0.85
SMG9-201ENST00000270066 PCGF6Q9BYE7 350 aa20.33■□□□□ 0.84
SMG9-201ENST00000270066 RANGAP1P46060 587 aaPredicted RBP20.32■□□□□ 0.84
SMG9-201ENST00000270066 ATP1B4Q9UN42 357 aaPredicted RBP20.24■□□□□ 0.83
SMG9-201ENST00000270066 UBTFP17480 764 aaKnown RBP20.2■□□□□ 0.82
SMG9-201ENST00000270066 ZEB1P37275 1124 aaPredicted RBP20.07■□□□□ 0.8
SMG9-201ENST00000270066 CCER1Q8TC90 406 aaPredicted RBP20■□□□□ 0.79
SMG9-201ENST00000270066 CENPBP07199 599 aaPredicted RBP19.94■□□□□ 0.78
SMG9-201ENST00000270066 MYT1Q01538 1121 aa19.83■□□□□ 0.76
SMG9-201ENST00000270066 ERICH6Q7L0X2 663 aa19.74■□□□□ 0.75
SMG9-201ENST00000270066 ABCC9O60706 1549 aa19.64■□□□□ 0.73
SMG9-201ENST00000270066 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.63■□□□□ 0.73
SMG9-201ENST00000270066 HNRNPUL2Q1KMD3 747 aaKnown RBP19.63■□□□□ 0.73
SMG9-201ENST00000270066 YTHDC1Q96MU7 727 aaKnown RBP19.62■□□□□ 0.73
SMG9-201ENST00000270066 MYT1LQ9UL68 1186 aa19.58■□□□□ 0.73
SMG9-201ENST00000270066 PPARGC1BQ86YN6 1023 aaKnown RBP19.55■□□□□ 0.72
SMG9-201ENST00000270066 HRCP23327 699 aa19.53■□□□□ 0.72
SMG9-201ENST00000270066 TRIM26Q12899 539 aaPredicted RBP19.53■□□□□ 0.72
SMG9-201ENST00000270066 NEFLP07196 543 aa19.49■□□□□ 0.71
SMG9-201ENST00000270066 PABPN1Q86U42 306 aaKnown RBP eCLIP19.44■□□□□ 0.72e-7■■■■■ 27.8
SMG9-201ENST00000270066 ITGAEP38570 1179 aa19.43■□□□□ 0.7
SMG9-201ENST00000270066 CHIC1Q5VXU3 224 aa19.43■□□□□ 0.7
SMG9-201ENST00000270066 LOC105371045A0A1W2PR82 267 aa19.31■□□□□ 0.68
SMG9-201ENST00000270066 POLR3GLQ9BT43 218 aa19.22■□□□□ 0.67
SMG9-201ENST00000270066 FAM50AQ14320 339 aaKnown RBP19.07■□□□□ 0.64
SMG9-201ENST00000270066 SLC4A1APQ9BWU0 796 aaKnown RBP18.97■□□□□ 0.63
SMG9-201ENST00000270066 FBLN2P98095 1184 aa18.97■□□□□ 0.63
SMG9-201ENST00000270066 TRIM52Q96A61 297 aa18.96■□□□□ 0.63
SMG9-201ENST00000270066 CNGB1Q14028 1251 aaPredicted RBP18.89■□□□□ 0.62
SMG9-201ENST00000270066 DAXXQ9UER7 740 aaPredicted RBP18.89■□□□□ 0.61
SMG9-201ENST00000270066 SCRIBQ14160 1630 aa18.85■□□□□ 0.61
SMG9-201ENST00000270066 DIEXFQ68CQ4 756 aaKnown RBP18.79■□□□□ 0.6
SMG9-201ENST00000270066 GTF3C3Q9Y5Q9 886 aa18.78■□□□□ 0.6
SMG9-201ENST00000270066 CCDC180Q9P1Z9 1646 aa18.78■□□□□ 0.6
SMG9-201ENST00000270066 ZCCHC6Q5VYS8 1495 aaKnown RBP18.77■□□□□ 0.59
SMG9-201ENST00000270066 NEUROD1Q13562 356 aa18.75■□□□□ 0.59
SMG9-201ENST00000270066 CSRNP3Q8WYN3 585 aa18.75■□□□□ 0.59
SMG9-201ENST00000270066 CDK11AQ9UQ88 783 aaPredicted RBP18.67■□□□□ 0.58
SMG9-201ENST00000270066 P3H3Q8IVL6 736 aa18.66■□□□□ 0.58
SMG9-201ENST00000270066 ZNF326Q5BKZ1 582 aaKnown RBP18.65■□□□□ 0.58
SMG9-201ENST00000270066 ARID3CA6NKF2 412 aa18.58■□□□□ 0.57
SMG9-201ENST00000270066 CLSPNQ9HAW4 1339 aa18.56■□□□□ 0.56
SMG9-201ENST00000270066 ANP32CO43423 234 aa18.55■□□□□ 0.56
SMG9-201ENST00000270066 BCANQ96GW7 911 aa18.55■□□□□ 0.56
SMG9-201ENST00000270066 ZNF777Q9ULD5 760 aaPredicted RBP18.54■□□□□ 0.56
SMG9-201ENST00000270066 RTL5Q5HYW3 569 aaPredicted RBP18.53■□□□□ 0.56
SMG9-201ENST00000270066 RB1CC1Q8TDY2 1594 aa18.53■□□□□ 0.56
SMG9-201ENST00000270066 NPM1P06748 294 aaKnown RBP eCLIP18.46■□□□□ 0.55
SMG9-201ENST00000270066 ACIN1Q9UKV3 1341 aaKnown RBP18.46■□□□□ 0.55
SMG9-201ENST00000270066 ESF1Q9H501 851 aaKnown RBP18.45■□□□□ 0.54
SMG9-201ENST00000270066 ZNF316A6NFI3 1004 aaPredicted RBP18.45■□□□□ 0.54
SMG9-201ENST00000270066 NEFMP07197 916 aa18.42■□□□□ 0.54
SMG9-201ENST00000270066 ZBTB47Q9UFB7 747 aaPredicted RBP18.39■□□□□ 0.53
SMG9-201ENST00000270066 NACADO15069 1562 aa18.31■□□□□ 0.52
SMG9-201ENST00000270066 STAG3Q9UJ98 1225 aa18.29■□□□□ 0.52
SMG9-201ENST00000270066 CANXP27824 592 aaKnown RBP18.29■□□□□ 0.52
SMG9-201ENST00000270066 SLC24A1O60721 1099 aa18.28■□□□□ 0.52
SMG9-201ENST00000270066 CHMP7Q8WUX9 453 aaPredicted RBP18.27■□□□□ 0.52
SMG9-201ENST00000270066 TONSLQ96HA7 1378 aa18.26■□□□□ 0.51
SMG9-201ENST00000270066 CHGAP10645 457 aaKnown RBP18.24■□□□□ 0.51
SMG9-201ENST00000270066 MTUS2Q5JR59 1369 aa18.17■□□□□ 0.5
SMG9-201ENST00000270066 DCAF1Q9Y4B6 1507 aa18.17■□□□□ 0.5
SMG9-201ENST00000270066 TSPY4P0CV99 314 aa18.17■□□□□ 0.5
SMG9-201ENST00000270066 TSPY10P0CW01 314 aa18.17■□□□□ 0.5
SMG9-201ENST00000270066 SCAF1Q9H7N4 1312 aaKnown RBP18.16■□□□□ 0.5
SMG9-201ENST00000270066 BAZ1BQ9UIG0 1483 aaKnown RBP18.15■□□□□ 0.5
SMG9-201ENST00000270066 EEA1Q15075 1411 aa18.12■□□□□ 0.49
SMG9-201ENST00000270066 CHIC2Q9UKJ5 165 aa18.12■□□□□ 0.49
SMG9-201ENST00000270066 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.11■□□□□ 0.49
SMG9-201ENST00000270066 CLIP1P30622 1438 aa18.1■□□□□ 0.49
SMG9-201ENST00000270066 RSF1Q96T23 1441 aaPredicted RBP18.1■□□□□ 0.49
SMG9-201ENST00000270066 PLPPR3Q6T4P5 718 aa18.09■□□□□ 0.49
SMG9-201ENST00000270066 GOLGA3Q08378 1498 aa18.04■□□□□ 0.48
SMG9-201ENST00000270066 WRNQ14191 1432 aaPredicted RBP eCLIP18.02■□□□□ 0.48
SMG9-201ENST00000270066 BCL11AQ9H165 835 aa18.01■□□□□ 0.47
SMG9-201ENST00000270066 PLEKHD1A6NEE1 506 aa17.99■□□□□ 0.47
SMG9-201ENST00000270066 KIF27Q86VH2 1401 aa17.98■□□□□ 0.47
SMG9-201ENST00000270066 EIF5BO60841 1220 aaKnown RBP17.97■□□□□ 0.47
SMG9-201ENST00000270066 BAZ1AQ9NRL2 1556 aaPredicted RBP17.96■□□□□ 0.47
SMG9-201ENST00000270066 ERCC6Q03468 1493 aa17.95■□□□□ 0.46
SMG9-201ENST00000270066 FKBP8Q14318 412 aa17.94■□□□□ 0.46
SMG9-201ENST00000270066 KCNH8Q96L42 1107 aa17.93■□□□□ 0.46
SMG9-201ENST00000270066 KDM2AQ9Y2K7 1162 aa17.91■□□□□ 0.46
SMG9-201ENST00000270066 DDX10Q13206 875 aaKnown RBP17.9■□□□□ 0.46
SMG9-201ENST00000270066 CEP162Q5TB80 1403 aa17.89■□□□□ 0.45
SMG9-201ENST00000270066 ANP32AP39687 249 aaKnown RBP17.88■□□□□ 0.45
SMG9-201ENST00000270066 CEP164Q9UPV0 1460 aa17.88■□□□□ 0.45
SMG9-201ENST00000270066 TMC1Q8TDI8 760 aa17.87■□□□□ 0.45
SMG9-201ENST00000270066 HNRNPUQ00839 825 aaKnown RBP eCLIP17.87■□□□□ 0.45
SMG9-201ENST00000270066 NPM2Q86SE8 214 aaKnown RBP17.87■□□□□ 0.45
SMG9-201ENST00000270066 FAM9BQ8IZU0 186 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms