RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 NISCHQ9Y2I1 1504 aa31.09■■■□□ 2.57
CPSF4-208ENST00000452047 CCDC180Q9P1Z9 1646 aa27.85■■■□□ 2.05
CPSF4-208ENST00000452047 ABCC9O60706 1549 aa27.51■■□□□ 1.99
CPSF4-208ENST00000452047 RB1CC1Q8TDY2 1594 aa26.33■■□□□ 1.81
CPSF4-208ENST00000452047 NACADO15069 1562 aa26.22■■□□□ 1.79
CPSF4-208ENST00000452047 DCAF8L2P0C7V8 631 aa25.98■■□□□ 1.75
CPSF4-208ENST00000452047 MYO15BQ96JP2 1530 aa25.97■■□□□ 1.75
CPSF4-208ENST00000452047 ZCCHC6Q5VYS8 1495 aaKnown RBP25.85■■□□□ 1.73
CPSF4-208ENST00000452047 UNC13AQ9UPW8 1703 aa25.81■■□□□ 1.72
CPSF4-208ENST00000452047 DCAF1Q9Y4B6 1507 aa25.73■■□□□ 1.71
CPSF4-208ENST00000452047 PABPN1Q86U42 306 aaKnown RBP eCLIP25.6■■□□□ 1.69
CPSF4-208ENST00000452047 BICRAQ9NZM4 1560 aa25.6■■□□□ 1.69
CPSF4-208ENST00000452047 DNAJC5BQ9UF47 199 aa25.56■■□□□ 1.68
CPSF4-208ENST00000452047 SCRIBQ14160 1630 aa25.34■■□□□ 1.65
CPSF4-208ENST00000452047 SHROOM4Q9ULL8 1493 aa25.28■■□□□ 1.64
CPSF4-208ENST00000452047 EIF4G1Q04637 1599 aaKnown RBP24.93■■□□□ 1.58
CPSF4-208ENST00000452047 CC2D2AQ9P2K1 1620 aa24.9■■□□□ 1.58
CPSF4-208ENST00000452047 CECR2Q9BXF3 1484 aa24.76■■□□□ 1.55
CPSF4-208ENST00000452047 SMARCA4P51532 1647 aa24.23■■□□□ 1.47
CPSF4-208ENST00000452047 NCAPD3P42695 1498 aa24.19■■□□□ 1.46
CPSF4-208ENST00000452047 ATAD2BQ9ULI0 1458 aa24.15■■□□□ 1.46
CPSF4-208ENST00000452047 BAZ1AQ9NRL2 1556 aaPredicted RBP24.12■■□□□ 1.45
CPSF4-208ENST00000452047 SMARCA2P51531 1590 aa24.11■■□□□ 1.45
CPSF4-208ENST00000452047 HMGXB3Q12766 1538 aa24.07■■□□□ 1.44
CPSF4-208ENST00000452047 PEG3Q9GZU2 1588 aa24.01■■□□□ 1.43
CPSF4-208ENST00000452047 MROH2BQ7Z745 1585 aa23.96■■□□□ 1.43
CPSF4-208ENST00000452047 BAZ1BQ9UIG0 1483 aaKnown RBP23.92■■□□□ 1.42
CPSF4-208ENST00000452047 NESP48681 1621 aa23.73■■□□□ 1.39
CPSF4-208ENST00000452047 ERCC6Q03468 1493 aa23.71■■□□□ 1.39
CPSF4-208ENST00000452047 WIZO95785 1651 aa23.7■■□□□ 1.38
CPSF4-208ENST00000452047 CUX2O14529 1486 aa23.63■■□□□ 1.37
CPSF4-208ENST00000452047 LAMC3Q9Y6N6 1575 aa23.63■■□□□ 1.37
CPSF4-208ENST00000452047 RSF1Q96T23 1441 aaPredicted RBP23.54■■□□□ 1.36
CPSF4-208ENST00000452047 THOC2Q8NI27 1593 aaKnown RBP23.48■■□□□ 1.35
CPSF4-208ENST00000452047 KIF21AQ7Z4S6 1674 aa23.48■■□□□ 1.35
CPSF4-208ENST00000452047 CADPSQ9ULU8 1353 aa23.44■■□□□ 1.34
CPSF4-208ENST00000452047 PDS5BQ9NTI5 1447 aa23.42■■□□□ 1.34
CPSF4-208ENST00000452047 TOP2AP11388 1531 aaKnown RBP23.42■■□□□ 1.34
CPSF4-208ENST00000452047 DNAJC5Q9H3Z4 198 aa23.27■■□□□ 1.32
CPSF4-208ENST00000452047 CFTRP13569 1480 aa23.26■■□□□ 1.31
CPSF4-208ENST00000452047 MRC2Q9UBG0 1479 aa23.24■■□□□ 1.31
CPSF4-208ENST00000452047 WDR62O43379 1518 aa23.21■■□□□ 1.31
CPSF4-208ENST00000452047 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
CPSF4-208ENST00000452047 FANCD2Q9BXW9 1451 aa23.19■■□□□ 1.3
CPSF4-208ENST00000452047 CCDC88BA6NC98 1476 aa23.12■■□□□ 1.29
CPSF4-208ENST00000452047 PRDM2Q13029 1718 aa23.12■■□□□ 1.29
CPSF4-208ENST00000452047 URB2Q14146 1524 aaKnown RBP23.01■■□□□ 1.27
CPSF4-208ENST00000452047 TOPBP1Q92547 1522 aa22.79■■□□□ 1.24
CPSF4-208ENST00000452047 DNMBPQ6XZF7 1577 aa22.75■■□□□ 1.23
CPSF4-208ENST00000452047 ABCC8Q09428 1581 aa22.74■■□□□ 1.23
CPSF4-208ENST00000452047 IFT140Q96RY7 1462 aa22.72■■□□□ 1.23
CPSF4-208ENST00000452047 ZNF608Q9ULD9 1512 aaPredicted RBP22.67■■□□□ 1.22
CPSF4-208ENST00000452047 TARBP1Q13395 1621 aaKnown RBP22.6■■□□□ 1.21
CPSF4-208ENST00000452047 EIF4G3O43432 1585 aaKnown RBP22.59■■□□□ 1.21
CPSF4-208ENST00000452047 SUPT5HO00267 1087 aaKnown RBP22.59■■□□□ 1.21
CPSF4-208ENST00000452047 POLA1P09884 1462 aaPredicted RBP22.58■■□□□ 1.2
CPSF4-208ENST00000452047 OSCARQ8IYS5 282 aa22.51■■□□□ 1.19
CPSF4-208ENST00000452047 CUX1P39880 1505 aa22.51■■□□□ 1.19
CPSF4-208ENST00000452047 AQRO60306 1485 aaKnown RBP eCLIP22.47■■□□□ 1.192e-7■■■■■ 81.6
CPSF4-208ENST00000452047 FGD5Q6ZNL6 1462 aa22.47■■□□□ 1.19
CPSF4-208ENST00000452047 RAD54L2Q9Y4B4 1467 aa22.47■■□□□ 1.19
CPSF4-208ENST00000452047 SOGA1O94964 1423 aa22.43■■□□□ 1.18
CPSF4-208ENST00000452047 WDR97A6NE52 1622 aa22.4■■□□□ 1.18
CPSF4-208ENST00000452047 CHD1O14646 1710 aa22.38■■□□□ 1.17
CPSF4-208ENST00000452047 TDRD9Q8NDG6 1382 aaKnown RBP22.35■■□□□ 1.17
CPSF4-208ENST00000452047 TRIM41Q8WV44 630 aa22.31■■□□□ 1.16
CPSF4-208ENST00000452047 RIMBP3CA6NJZ7 1639 aa22.29■■□□□ 1.16
CPSF4-208ENST00000452047 RIMBP3BA6NNM3 1639 aa22.29■■□□□ 1.16
CPSF4-208ENST00000452047 RIMBP3Q9UFD9 1639 aa22.29■■□□□ 1.16
CPSF4-208ENST00000452047 SNAPC4Q5SXM2 1469 aa22.27■■□□□ 1.16
CPSF4-208ENST00000452047 BIVM-ERCC5R4GMW8 1640 aa22.24■■□□□ 1.15
CPSF4-208ENST00000452047 ARHGEF11O15085 1522 aa22.24■■□□□ 1.15
CPSF4-208ENST00000452047 ABCA10Q8WWZ4 1543 aa22.24■■□□□ 1.15
CPSF4-208ENST00000452047 GRIN2BQ13224 1484 aa22.23■■□□□ 1.15
CPSF4-208ENST00000452047 MAGI1Q96QZ7 1491 aaPredicted RBP22.23■■□□□ 1.15
CPSF4-208ENST00000452047 TOP2BQ02880 1626 aa22.23■■□□□ 1.15
CPSF4-208ENST00000452047 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
CPSF4-208ENST00000452047 ABCA5Q8WWZ7 1642 aa22.22■■□□□ 1.15
CPSF4-208ENST00000452047 SYNJ1O43426 1573 aa22.21■■□□□ 1.15
CPSF4-208ENST00000452047 FBLN2P98095 1184 aa22.19■■□□□ 1.14
CPSF4-208ENST00000452047 WRNQ14191 1432 aaPredicted RBP eCLIP22.19■■□□□ 1.145e-6■■■■■ 29.2
CPSF4-208ENST00000452047 GAPVD1Q14C86 1478 aa22.19■■□□□ 1.14
CPSF4-208ENST00000452047 SYNJ2O15056 1496 aa22.15■■□□□ 1.14
CPSF4-208ENST00000452047 CLASP1Q7Z460 1538 aa22.13■■□□□ 1.13
CPSF4-208ENST00000452047 CHMP7Q8WUX9 453 aaPredicted RBP22.09■■□□□ 1.13
CPSF4-208ENST00000452047 ARAP1Q96P48 1450 aa22.03■■□□□ 1.12
CPSF4-208ENST00000452047 ADAMTS12P58397 1594 aa22.03■■□□□ 1.12
CPSF4-208ENST00000452047 ERICH3Q5RHP9 1530 aa21.97■■□□□ 1.11
CPSF4-208ENST00000452047 GRIN2AQ12879 1464 aa21.96■■□□□ 1.11
CPSF4-208ENST00000452047 CYB5RLQ6IPT4 315 aa21.96■■□□□ 1.11
CPSF4-208ENST00000452047 FHAD1B1AJZ9 1412 aa21.91■■□□□ 1.1
CPSF4-208ENST00000452047 CEP170Q5SW79 1584 aa21.9■■□□□ 1.1
CPSF4-208ENST00000452047 NUP160Q12769 1436 aa21.89■■□□□ 1.1
CPSF4-208ENST00000452047 SHROOM2Q13796 1616 aa21.8■■□□□ 1.08
CPSF4-208ENST00000452047 ERCC6L2Q5T890 1561 aa21.78■■□□□ 1.08
CPSF4-208ENST00000452047 KIF27Q86VH2 1401 aa21.74■■□□□ 1.07
CPSF4-208ENST00000452047 RUSC2Q8N2Y8 1516 aa21.72■■□□□ 1.07
CPSF4-208ENST00000452047 CUL7Q14999 1698 aa21.72■■□□□ 1.07
CPSF4-208ENST00000452047 IGF1RP08069 1367 aa21.7■■□□□ 1.06
CPSF4-208ENST00000452047 PRG4Q92954 1404 aaPredicted RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms