RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 NISCHQ9Y2I1 1504 aa31.09■■■□□ 2.57
CPSF4-208ENST00000452047 CCDC180Q9P1Z9 1646 aa27.85■■■□□ 2.05
CPSF4-208ENST00000452047 ABCC9O60706 1549 aa27.51■■□□□ 1.99
CPSF4-208ENST00000452047 RB1CC1Q8TDY2 1594 aa26.33■■□□□ 1.81
CPSF4-208ENST00000452047 NACADO15069 1562 aa26.22■■□□□ 1.79
CPSF4-208ENST00000452047 DCAF8L2P0C7V8 631 aa25.98■■□□□ 1.75
CPSF4-208ENST00000452047 MYO15BQ96JP2 1530 aa25.97■■□□□ 1.75
CPSF4-208ENST00000452047 ZCCHC6Q5VYS8 1495 aaKnown RBP25.85■■□□□ 1.73
CPSF4-208ENST00000452047 UNC13AQ9UPW8 1703 aa25.81■■□□□ 1.72
CPSF4-208ENST00000452047 DCAF1Q9Y4B6 1507 aa25.73■■□□□ 1.71
CPSF4-208ENST00000452047 PABPN1Q86U42 306 aaKnown RBP eCLIP25.6■■□□□ 1.69
CPSF4-208ENST00000452047 BICRAQ9NZM4 1560 aa25.6■■□□□ 1.69
CPSF4-208ENST00000452047 DNAJC5BQ9UF47 199 aa25.56■■□□□ 1.68
CPSF4-208ENST00000452047 SCRIBQ14160 1630 aa25.34■■□□□ 1.65
CPSF4-208ENST00000452047 SHROOM4Q9ULL8 1493 aa25.28■■□□□ 1.64
CPSF4-208ENST00000452047 EIF4G1Q04637 1599 aaKnown RBP24.93■■□□□ 1.58
CPSF4-208ENST00000452047 CC2D2AQ9P2K1 1620 aa24.9■■□□□ 1.58
CPSF4-208ENST00000452047 CECR2Q9BXF3 1484 aa24.76■■□□□ 1.55
CPSF4-208ENST00000452047 SMARCA4P51532 1647 aa24.23■■□□□ 1.47
CPSF4-208ENST00000452047 NCAPD3P42695 1498 aa24.19■■□□□ 1.46
CPSF4-208ENST00000452047 ATAD2BQ9ULI0 1458 aa24.15■■□□□ 1.46
CPSF4-208ENST00000452047 BAZ1AQ9NRL2 1556 aaPredicted RBP24.12■■□□□ 1.45
CPSF4-208ENST00000452047 SMARCA2P51531 1590 aa24.11■■□□□ 1.45
CPSF4-208ENST00000452047 HMGXB3Q12766 1538 aa24.07■■□□□ 1.44
CPSF4-208ENST00000452047 PEG3Q9GZU2 1588 aa24.01■■□□□ 1.43
CPSF4-208ENST00000452047 MROH2BQ7Z745 1585 aa23.96■■□□□ 1.43
CPSF4-208ENST00000452047 BAZ1BQ9UIG0 1483 aaKnown RBP23.92■■□□□ 1.42
CPSF4-208ENST00000452047 NESP48681 1621 aa23.73■■□□□ 1.39
CPSF4-208ENST00000452047 ERCC6Q03468 1493 aa23.71■■□□□ 1.39
CPSF4-208ENST00000452047 WIZO95785 1651 aa23.7■■□□□ 1.38
CPSF4-208ENST00000452047 CUX2O14529 1486 aa23.63■■□□□ 1.37
CPSF4-208ENST00000452047 LAMC3Q9Y6N6 1575 aa23.63■■□□□ 1.37
CPSF4-208ENST00000452047 RSF1Q96T23 1441 aaPredicted RBP23.54■■□□□ 1.36
CPSF4-208ENST00000452047 THOC2Q8NI27 1593 aaKnown RBP23.48■■□□□ 1.35
CPSF4-208ENST00000452047 KIF21AQ7Z4S6 1674 aa23.48■■□□□ 1.35
CPSF4-208ENST00000452047 CADPSQ9ULU8 1353 aa23.44■■□□□ 1.34
CPSF4-208ENST00000452047 PDS5BQ9NTI5 1447 aa23.42■■□□□ 1.34
CPSF4-208ENST00000452047 TOP2AP11388 1531 aaKnown RBP23.42■■□□□ 1.34
CPSF4-208ENST00000452047 DNAJC5Q9H3Z4 198 aa23.27■■□□□ 1.32
CPSF4-208ENST00000452047 CFTRP13569 1480 aa23.26■■□□□ 1.31
CPSF4-208ENST00000452047 MRC2Q9UBG0 1479 aa23.24■■□□□ 1.31
CPSF4-208ENST00000452047 WDR62O43379 1518 aa23.21■■□□□ 1.31
CPSF4-208ENST00000452047 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
CPSF4-208ENST00000452047 FANCD2Q9BXW9 1451 aa23.19■■□□□ 1.3
CPSF4-208ENST00000452047 CCDC88BA6NC98 1476 aa23.12■■□□□ 1.29
CPSF4-208ENST00000452047 PRDM2Q13029 1718 aa23.12■■□□□ 1.29
CPSF4-208ENST00000452047 URB2Q14146 1524 aaKnown RBP23.01■■□□□ 1.27
CPSF4-208ENST00000452047 TOPBP1Q92547 1522 aa22.79■■□□□ 1.24
CPSF4-208ENST00000452047 DNMBPQ6XZF7 1577 aa22.75■■□□□ 1.23
CPSF4-208ENST00000452047 ABCC8Q09428 1581 aa22.74■■□□□ 1.23
CPSF4-208ENST00000452047 IFT140Q96RY7 1462 aa22.72■■□□□ 1.23
CPSF4-208ENST00000452047 ZNF608Q9ULD9 1512 aaPredicted RBP22.67■■□□□ 1.22
CPSF4-208ENST00000452047 TARBP1Q13395 1621 aaKnown RBP22.6■■□□□ 1.21
CPSF4-208ENST00000452047 EIF4G3O43432 1585 aaKnown RBP22.59■■□□□ 1.21
CPSF4-208ENST00000452047 SUPT5HO00267 1087 aaKnown RBP22.59■■□□□ 1.21
CPSF4-208ENST00000452047 POLA1P09884 1462 aaPredicted RBP22.58■■□□□ 1.2
CPSF4-208ENST00000452047 OSCARQ8IYS5 282 aa22.51■■□□□ 1.19
CPSF4-208ENST00000452047 CUX1P39880 1505 aa22.51■■□□□ 1.19
CPSF4-208ENST00000452047 AQRO60306 1485 aaKnown RBP eCLIP22.47■■□□□ 1.192e-7■■■■■ 81.6
CPSF4-208ENST00000452047 FGD5Q6ZNL6 1462 aa22.47■■□□□ 1.19
CPSF4-208ENST00000452047 RAD54L2Q9Y4B4 1467 aa22.47■■□□□ 1.19
CPSF4-208ENST00000452047 SOGA1O94964 1423 aa22.43■■□□□ 1.18
CPSF4-208ENST00000452047 WDR97A6NE52 1622 aa22.4■■□□□ 1.18
CPSF4-208ENST00000452047 CHD1O14646 1710 aa22.38■■□□□ 1.17
CPSF4-208ENST00000452047 TDRD9Q8NDG6 1382 aaKnown RBP22.35■■□□□ 1.17
CPSF4-208ENST00000452047 TRIM41Q8WV44 630 aa22.31■■□□□ 1.16
CPSF4-208ENST00000452047 RIMBP3CA6NJZ7 1639 aa22.29■■□□□ 1.16
CPSF4-208ENST00000452047 RIMBP3BA6NNM3 1639 aa22.29■■□□□ 1.16
CPSF4-208ENST00000452047 RIMBP3Q9UFD9 1639 aa22.29■■□□□ 1.16
CPSF4-208ENST00000452047 SNAPC4Q5SXM2 1469 aa22.27■■□□□ 1.16
CPSF4-208ENST00000452047 BIVM-ERCC5R4GMW8 1640 aa22.24■■□□□ 1.15
CPSF4-208ENST00000452047 ARHGEF11O15085 1522 aa22.24■■□□□ 1.15
CPSF4-208ENST00000452047 ABCA10Q8WWZ4 1543 aa22.24■■□□□ 1.15
CPSF4-208ENST00000452047 GRIN2BQ13224 1484 aa22.23■■□□□ 1.15
CPSF4-208ENST00000452047 MAGI1Q96QZ7 1491 aaPredicted RBP22.23■■□□□ 1.15
CPSF4-208ENST00000452047 TOP2BQ02880 1626 aa22.23■■□□□ 1.15
CPSF4-208ENST00000452047 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
CPSF4-208ENST00000452047 ABCA5Q8WWZ7 1642 aa22.22■■□□□ 1.15
CPSF4-208ENST00000452047 SYNJ1O43426 1573 aa22.21■■□□□ 1.15
CPSF4-208ENST00000452047 FBLN2P98095 1184 aa22.19■■□□□ 1.14
CPSF4-208ENST00000452047 WRNQ14191 1432 aaPredicted RBP eCLIP22.19■■□□□ 1.145e-6■■■■■ 29.2
CPSF4-208ENST00000452047 GAPVD1Q14C86 1478 aa22.19■■□□□ 1.14
CPSF4-208ENST00000452047 SYNJ2O15056 1496 aa22.15■■□□□ 1.14
CPSF4-208ENST00000452047 CLASP1Q7Z460 1538 aa22.13■■□□□ 1.13
CPSF4-208ENST00000452047 CHMP7Q8WUX9 453 aaPredicted RBP22.09■■□□□ 1.13
CPSF4-208ENST00000452047 ARAP1Q96P48 1450 aa22.03■■□□□ 1.12
CPSF4-208ENST00000452047 ADAMTS12P58397 1594 aa22.03■■□□□ 1.12
CPSF4-208ENST00000452047 ERICH3Q5RHP9 1530 aa21.97■■□□□ 1.11
CPSF4-208ENST00000452047 GRIN2AQ12879 1464 aa21.96■■□□□ 1.11
CPSF4-208ENST00000452047 CYB5RLQ6IPT4 315 aa21.96■■□□□ 1.11
CPSF4-208ENST00000452047 FHAD1B1AJZ9 1412 aa21.91■■□□□ 1.1
CPSF4-208ENST00000452047 CEP170Q5SW79 1584 aa21.9■■□□□ 1.1
CPSF4-208ENST00000452047 NUP160Q12769 1436 aa21.89■■□□□ 1.1
CPSF4-208ENST00000452047 SHROOM2Q13796 1616 aa21.8■■□□□ 1.08
CPSF4-208ENST00000452047 ERCC6L2Q5T890 1561 aa21.78■■□□□ 1.08
CPSF4-208ENST00000452047 KIF27Q86VH2 1401 aa21.74■■□□□ 1.07
CPSF4-208ENST00000452047 RUSC2Q8N2Y8 1516 aa21.72■■□□□ 1.07
CPSF4-208ENST00000452047 CUL7Q14999 1698 aa21.72■■□□□ 1.07
CPSF4-208ENST00000452047 IGF1RP08069 1367 aa21.7■■□□□ 1.06
CPSF4-208ENST00000452047 PRG4Q92954 1404 aaPredicted RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms