RNA–Protein interactions for RNA: ENST00000604306.1

NEDD8-MDP1-203, Transcript of NEDD8-MDP1 readthrough, humanhuman

TSL 5

Gene NEDD8-MDP1, Length 681 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-MDP1-203ENST00000604306 NISCHQ9Y2I1 1504 aa28.23■■■□□ 2.11
NEDD8-MDP1-203ENST00000604306 CCDC180Q9P1Z9 1646 aa24.9■■□□□ 1.58
NEDD8-MDP1-203ENST00000604306 ZCCHC6Q5VYS8 1495 aaKnown RBP23.75■■□□□ 1.39
NEDD8-MDP1-203ENST00000604306 DCAF1Q9Y4B6 1507 aa23.54■■□□□ 1.36
NEDD8-MDP1-203ENST00000604306 MYO15BQ96JP2 1530 aa23.33■■□□□ 1.33
NEDD8-MDP1-203ENST00000604306 ABCC9O60706 1549 aa23.15■■□□□ 1.3
NEDD8-MDP1-203ENST00000604306 NACADO15069 1562 aa23.1■■□□□ 1.29
NEDD8-MDP1-203ENST00000604306 RB1CC1Q8TDY2 1594 aa22.88■■□□□ 1.25
NEDD8-MDP1-203ENST00000604306 DCAF8L2P0C7V8 631 aa22.87■■□□□ 1.25
NEDD8-MDP1-203ENST00000604306 SHROOM4Q9ULL8 1493 aa22.58■■□□□ 1.2
NEDD8-MDP1-203ENST00000604306 SCRIBQ14160 1630 aa22.57■■□□□ 1.2
NEDD8-MDP1-203ENST00000604306 UNC13AQ9UPW8 1703 aa22.46■■□□□ 1.19
NEDD8-MDP1-203ENST00000604306 BICRAQ9NZM4 1560 aa22.11■■□□□ 1.13
NEDD8-MDP1-203ENST00000604306 BAZ1AQ9NRL2 1556 aaPredicted RBP21.88■■□□□ 1.09
NEDD8-MDP1-203ENST00000604306 RSF1Q96T23 1441 aaPredicted RBP21.78■■□□□ 1.08
NEDD8-MDP1-203ENST00000604306 CECR2Q9BXF3 1484 aa21.77■■□□□ 1.08
NEDD8-MDP1-203ENST00000604306 SMARCA4P51532 1647 aa21.77■■□□□ 1.07
NEDD8-MDP1-203ENST00000604306 MROH2BQ7Z745 1585 aa21.71■■□□□ 1.07
NEDD8-MDP1-203ENST00000604306 SUPT5HO00267 1087 aaKnown RBP21.69■■□□□ 1.06
NEDD8-MDP1-203ENST00000604306 PABPN1Q86U42 306 aaKnown RBP eCLIP21.65■■□□□ 1.06
NEDD8-MDP1-203ENST00000604306 PEG3Q9GZU2 1588 aa21.61■■□□□ 1.05
NEDD8-MDP1-203ENST00000604306 WIZO95785 1651 aa21.57■■□□□ 1.04
NEDD8-MDP1-203ENST00000604306 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.02
NEDD8-MDP1-203ENST00000604306 SMARCA2P51531 1590 aa21.44■■□□□ 1.02
NEDD8-MDP1-203ENST00000604306 EIF4G1Q04637 1599 aaKnown RBP21.44■■□□□ 1.02
NEDD8-MDP1-203ENST00000604306 ATAD2BQ9ULI0 1458 aa21.33■■□□□ 1.01
NEDD8-MDP1-203ENST00000604306 HMGXB3Q12766 1538 aa21.29■■□□□ 1
NEDD8-MDP1-203ENST00000604306 NCAPD3P42695 1498 aa21.22■□□□□ 0.99
NEDD8-MDP1-203ENST00000604306 BAZ1BQ9UIG0 1483 aaKnown RBP21.21■□□□□ 0.99
NEDD8-MDP1-203ENST00000604306 CC2D2AQ9P2K1 1620 aa21.12■□□□□ 0.97
NEDD8-MDP1-203ENST00000604306 CCDC88BA6NC98 1476 aa21.09■□□□□ 0.97
NEDD8-MDP1-203ENST00000604306 PRDM2Q13029 1718 aa20.9■□□□□ 0.94
NEDD8-MDP1-203ENST00000604306 CHIC1Q5VXU3 224 aa20.88■□□□□ 0.93
NEDD8-MDP1-203ENST00000604306 CFTRP13569 1480 aa20.71■□□□□ 0.91
NEDD8-MDP1-203ENST00000604306 CADPSQ9ULU8 1353 aa20.59■□□□□ 0.89
NEDD8-MDP1-203ENST00000604306 LAMC3Q9Y6N6 1575 aa20.59■□□□□ 0.89
NEDD8-MDP1-203ENST00000604306 ABCC8Q09428 1581 aa20.57■□□□□ 0.88
NEDD8-MDP1-203ENST00000604306 BIVM-ERCC5R4GMW8 1640 aa20.54■□□□□ 0.88
NEDD8-MDP1-203ENST00000604306 TRIM41Q8WV44 630 aa20.54■□□□□ 0.88
NEDD8-MDP1-203ENST00000604306 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.88
NEDD8-MDP1-203ENST00000604306 TOP2BQ02880 1626 aa20.5■□□□□ 0.87
NEDD8-MDP1-203ENST00000604306 SYNJ1O43426 1573 aa20.46■□□□□ 0.87
NEDD8-MDP1-203ENST00000604306 FANCD2Q9BXW9 1451 aa20.37■□□□□ 0.85
NEDD8-MDP1-203ENST00000604306 EEA1Q15075 1411 aa20.36■□□□□ 0.85
NEDD8-MDP1-203ENST00000604306 CUX1P39880 1505 aa20.34■□□□□ 0.85
NEDD8-MDP1-203ENST00000604306 PDS5BQ9NTI5 1447 aa20.32■□□□□ 0.84
NEDD8-MDP1-203ENST00000604306 NESP48681 1621 aa20.31■□□□□ 0.84
NEDD8-MDP1-203ENST00000604306 DNAJC5BQ9UF47 199 aa20.3■□□□□ 0.84
NEDD8-MDP1-203ENST00000604306 CEP164Q9UPV0 1460 aa20.29■□□□□ 0.84
NEDD8-MDP1-203ENST00000604306 DNMBPQ6XZF7 1577 aa20.29■□□□□ 0.84
NEDD8-MDP1-203ENST00000604306 KIF21AQ7Z4S6 1674 aa20.27■□□□□ 0.84
NEDD8-MDP1-203ENST00000604306 TOPBP1Q92547 1522 aa20.17■□□□□ 0.82
NEDD8-MDP1-203ENST00000604306 SOGA1O94964 1423 aa20.12■□□□□ 0.81
NEDD8-MDP1-203ENST00000604306 FGD5Q6ZNL6 1462 aa20.11■□□□□ 0.81
NEDD8-MDP1-203ENST00000604306 KIF21BO75037 1637 aa20.11■□□□□ 0.81
NEDD8-MDP1-203ENST00000604306 URB2Q14146 1524 aaKnown RBP20.11■□□□□ 0.81
NEDD8-MDP1-203ENST00000604306 WDR97A6NE52 1622 aa20.09■□□□□ 0.81
NEDD8-MDP1-203ENST00000604306 MRC2Q9UBG0 1479 aa20.07■□□□□ 0.8
NEDD8-MDP1-203ENST00000604306 POLA1P09884 1462 aaPredicted RBP20.05■□□□□ 0.8
NEDD8-MDP1-203ENST00000604306 KIF27Q86VH2 1401 aa20.04■□□□□ 0.8
NEDD8-MDP1-203ENST00000604306 WDR62O43379 1518 aa20.03■□□□□ 0.8
NEDD8-MDP1-203ENST00000604306 ABCA10Q8WWZ4 1543 aa20.03■□□□□ 0.8
NEDD8-MDP1-203ENST00000604306 RUSC2Q8N2Y8 1516 aa20.02■□□□□ 0.8
NEDD8-MDP1-203ENST00000604306 CSRNP3Q8WYN3 585 aa20■□□□□ 0.79
NEDD8-MDP1-203ENST00000604306 ERICH3Q5RHP9 1530 aa19.99■□□□□ 0.79
NEDD8-MDP1-203ENST00000604306 THOC2Q8NI27 1593 aaKnown RBP19.99■□□□□ 0.79
NEDD8-MDP1-203ENST00000604306 GOLGA3Q08378 1498 aa19.97■□□□□ 0.79
NEDD8-MDP1-203ENST00000604306 FAM9AQ8IZU1 332 aaPredicted RBP19.95■□□□□ 0.78
NEDD8-MDP1-203ENST00000604306 TARBP1Q13395 1621 aaKnown RBP19.94■□□□□ 0.78
NEDD8-MDP1-203ENST00000604306 CUX2O14529 1486 aa19.93■□□□□ 0.78
NEDD8-MDP1-203ENST00000604306 ABCA5Q8WWZ7 1642 aa19.93■□□□□ 0.78
NEDD8-MDP1-203ENST00000604306 ERCC6Q03468 1493 aa19.92■□□□□ 0.78
NEDD8-MDP1-203ENST00000604306 PRXQ9BXM0 1461 aa19.92■□□□□ 0.78
NEDD8-MDP1-203ENST00000604306 CUL7Q14999 1698 aa19.91■□□□□ 0.78
NEDD8-MDP1-203ENST00000604306 LOC105371045A0A1W2PR82 267 aa19.9■□□□□ 0.78
NEDD8-MDP1-203ENST00000604306 TNIKQ9UKE5 1360 aa19.86■□□□□ 0.77
NEDD8-MDP1-203ENST00000604306 RAD54L2Q9Y4B4 1467 aa19.86■□□□□ 0.77
NEDD8-MDP1-203ENST00000604306 IFT140Q96RY7 1462 aa19.84■□□□□ 0.77
NEDD8-MDP1-203ENST00000604306 PBRM1Q86U86 1689 aa19.81■□□□□ 0.76
NEDD8-MDP1-203ENST00000604306 IGF1RP08069 1367 aa19.79■□□□□ 0.76
NEDD8-MDP1-203ENST00000604306 RAPGEF2Q9Y4G8 1499 aa19.78■□□□□ 0.76
NEDD8-MDP1-203ENST00000604306 GAPVD1Q14C86 1478 aa19.75■□□□□ 0.75
NEDD8-MDP1-203ENST00000604306 CEP162Q5TB80 1403 aa19.7■□□□□ 0.74
NEDD8-MDP1-203ENST00000604306 CARMIL1Q5VZK9 1371 aa19.7■□□□□ 0.74
NEDD8-MDP1-203ENST00000604306 CTTNBP2Q8WZ74 1663 aa19.68■□□□□ 0.74
NEDD8-MDP1-203ENST00000604306 EIF4G3O43432 1585 aaKnown RBP19.67■□□□□ 0.74
NEDD8-MDP1-203ENST00000604306 GRIN2BQ13224 1484 aa19.65■□□□□ 0.74
NEDD8-MDP1-203ENST00000604306 ADAMTS12P58397 1594 aa19.65■□□□□ 0.74
NEDD8-MDP1-203ENST00000604306 UBTFP17480 764 aaKnown RBP19.64■□□□□ 0.73
NEDD8-MDP1-203ENST00000604306 TDRD9Q8NDG6 1382 aaKnown RBP19.62■□□□□ 0.73
NEDD8-MDP1-203ENST00000604306 FHAD1B1AJZ9 1412 aa19.58■□□□□ 0.72
NEDD8-MDP1-203ENST00000604306 ZNF608Q9ULD9 1512 aaPredicted RBP19.56■□□□□ 0.72
NEDD8-MDP1-203ENST00000604306 CLIP1P30622 1438 aa19.56■□□□□ 0.72
NEDD8-MDP1-203ENST00000604306 MAGI1Q96QZ7 1491 aaPredicted RBP19.55■□□□□ 0.72
NEDD8-MDP1-203ENST00000604306 AQRO60306 1485 aaKnown RBP eCLIP19.54■□□□□ 0.728e-8■■□□□ 11.9
NEDD8-MDP1-203ENST00000604306 EHMT2Q96KQ7 1210 aa19.51■□□□□ 0.71
NEDD8-MDP1-203ENST00000604306 EFCAB5A4FU69 1503 aa19.51■□□□□ 0.71
NEDD8-MDP1-203ENST00000604306 SNAPC4Q5SXM2 1469 aa19.46■□□□□ 0.71
NEDD8-MDP1-203ENST00000604306 VPS8Q8N3P4 1428 aa19.44■□□□□ 0.7
NEDD8-MDP1-203ENST00000604306 SYNJ2O15056 1496 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms