RNA–Protein interactions for RNA: ENST00000510940.1

LETM1-204, Transcript of leucine zipper and EF-hand containing transmembrane protein 1, humanhuman

TSL 2

Gene LETM1, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETM1-204ENST00000510940 NISCHQ9Y2I1 1504 aa31.34■■■□□ 2.61
LETM1-204ENST00000510940 CCDC180Q9P1Z9 1646 aa27.65■■■□□ 2.02
LETM1-204ENST00000510940 ABCC9O60706 1549 aa26.36■■□□□ 1.81
LETM1-204ENST00000510940 ZCCHC6Q5VYS8 1495 aaKnown RBP26.23■■□□□ 1.79
LETM1-204ENST00000510940 DCAF1Q9Y4B6 1507 aa26.02■■□□□ 1.76
LETM1-204ENST00000510940 DCAF8L2P0C7V8 631 aa25.95■■□□□ 1.74
LETM1-204ENST00000510940 MYO15BQ96JP2 1530 aa25.92■■□□□ 1.74
LETM1-204ENST00000510940 NACADO15069 1562 aa25.86■■□□□ 1.73
LETM1-204ENST00000510940 RB1CC1Q8TDY2 1594 aa25.73■■□□□ 1.71
LETM1-204ENST00000510940 SCRIBQ14160 1630 aa25.19■■□□□ 1.62
LETM1-204ENST00000510940 SHROOM4Q9ULL8 1493 aa25.07■■□□□ 1.6
LETM1-204ENST00000510940 UNC13AQ9UPW8 1703 aa25.05■■□□□ 1.6
LETM1-204ENST00000510940 BICRAQ9NZM4 1560 aa24.8■■□□□ 1.56
LETM1-204ENST00000510940 PABPN1Q86U42 306 aaKnown RBP eCLIP24.71■■□□□ 1.55
LETM1-204ENST00000510940 BAZ1AQ9NRL2 1556 aaPredicted RBP24.29■■□□□ 1.48
LETM1-204ENST00000510940 CECR2Q9BXF3 1484 aa24.26■■□□□ 1.47
LETM1-204ENST00000510940 SMARCA4P51532 1647 aa24.18■■□□□ 1.46
LETM1-204ENST00000510940 EIF4G1Q04637 1599 aaKnown RBP24.15■■□□□ 1.46
LETM1-204ENST00000510940 MROH2BQ7Z745 1585 aa24.11■■□□□ 1.45
LETM1-204ENST00000510940 RSF1Q96T23 1441 aaPredicted RBP24.08■■□□□ 1.44
LETM1-204ENST00000510940 DNAJC5BQ9UF47 199 aa24.01■■□□□ 1.43
LETM1-204ENST00000510940 SUPT5HO00267 1087 aaKnown RBP23.97■■□□□ 1.43
LETM1-204ENST00000510940 SMARCA2P51531 1590 aa23.97■■□□□ 1.43
LETM1-204ENST00000510940 PEG3Q9GZU2 1588 aa23.95■■□□□ 1.43
LETM1-204ENST00000510940 ATAD2BQ9ULI0 1458 aa23.89■■□□□ 1.42
LETM1-204ENST00000510940 CC2D2AQ9P2K1 1620 aa23.89■■□□□ 1.42
LETM1-204ENST00000510940 WIZO95785 1651 aa23.89■■□□□ 1.41
LETM1-204ENST00000510940 NCAPD3P42695 1498 aa23.81■■□□□ 1.4
LETM1-204ENST00000510940 HMGXB3Q12766 1538 aa23.77■■□□□ 1.4
LETM1-204ENST00000510940 BAZ1BQ9UIG0 1483 aaKnown RBP23.76■■□□□ 1.39
LETM1-204ENST00000510940 TOP2AP11388 1531 aaKnown RBP23.74■■□□□ 1.39
LETM1-204ENST00000510940 CCDC88BA6NC98 1476 aa23.42■■□□□ 1.34
LETM1-204ENST00000510940 CADPSQ9ULU8 1353 aa23.16■■□□□ 1.3
LETM1-204ENST00000510940 CFTRP13569 1480 aa23.14■■□□□ 1.29
LETM1-204ENST00000510940 LAMC3Q9Y6N6 1575 aa23.11■■□□□ 1.29
LETM1-204ENST00000510940 PRDM2Q13029 1718 aa23.07■■□□□ 1.28
LETM1-204ENST00000510940 PDS5BQ9NTI5 1447 aa22.97■■□□□ 1.27
LETM1-204ENST00000510940 NESP48681 1621 aa22.94■■□□□ 1.26
LETM1-204ENST00000510940 FANCD2Q9BXW9 1451 aa22.88■■□□□ 1.25
LETM1-204ENST00000510940 ERCC6Q03468 1493 aa22.86■■□□□ 1.25
LETM1-204ENST00000510940 CEP164Q9UPV0 1460 aa22.82■■□□□ 1.24
LETM1-204ENST00000510940 KIF21AQ7Z4S6 1674 aa22.74■■□□□ 1.23
LETM1-204ENST00000510940 WRNQ14191 1432 aaPredicted RBP eCLIP22.74■■□□□ 1.23
LETM1-204ENST00000510940 ABCC8Q09428 1581 aa22.72■■□□□ 1.23
LETM1-204ENST00000510940 CHIC1Q5VXU3 224 aa22.72■■□□□ 1.23
LETM1-204ENST00000510940 TRIM41Q8WV44 630 aa22.68■■□□□ 1.22
LETM1-204ENST00000510940 MRC2Q9UBG0 1479 aa22.64■■□□□ 1.21
LETM1-204ENST00000510940 DNMBPQ6XZF7 1577 aa22.63■■□□□ 1.21
LETM1-204ENST00000510940 TOP2BQ02880 1626 aa22.62■■□□□ 1.21
LETM1-204ENST00000510940 BIVM-ERCC5R4GMW8 1640 aa22.6■■□□□ 1.21
LETM1-204ENST00000510940 CUX2O14529 1486 aa22.6■■□□□ 1.21
LETM1-204ENST00000510940 CUX1P39880 1505 aa22.59■■□□□ 1.21
LETM1-204ENST00000510940 SYNJ1O43426 1573 aa22.57■■□□□ 1.2
LETM1-204ENST00000510940 TOPBP1Q92547 1522 aa22.57■■□□□ 1.2
LETM1-204ENST00000510940 URB2Q14146 1524 aaKnown RBP22.55■■□□□ 1.2
LETM1-204ENST00000510940 WDR62O43379 1518 aa22.52■■□□□ 1.2
LETM1-204ENST00000510940 THOC2Q8NI27 1593 aaKnown RBP22.5■■□□□ 1.19
LETM1-204ENST00000510940 FGD5Q6ZNL6 1462 aa22.44■■□□□ 1.18
LETM1-204ENST00000510940 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
LETM1-204ENST00000510940 SOGA1O94964 1423 aa22.37■■□□□ 1.17
LETM1-204ENST00000510940 IFT140Q96RY7 1462 aa22.33■■□□□ 1.16
LETM1-204ENST00000510940 EEA1Q15075 1411 aa22.31■■□□□ 1.16
LETM1-204ENST00000510940 ABCA10Q8WWZ4 1543 aa22.3■■□□□ 1.16
LETM1-204ENST00000510940 KIF27Q86VH2 1401 aa22.27■■□□□ 1.16
LETM1-204ENST00000510940 RAD54L2Q9Y4B4 1467 aa22.26■■□□□ 1.15
LETM1-204ENST00000510940 TARBP1Q13395 1621 aaKnown RBP22.25■■□□□ 1.15
LETM1-204ENST00000510940 WDR97A6NE52 1622 aa22.24■■□□□ 1.15
LETM1-204ENST00000510940 GAPVD1Q14C86 1478 aa22.13■■□□□ 1.13
LETM1-204ENST00000510940 ABCA5Q8WWZ7 1642 aa22.12■■□□□ 1.13
LETM1-204ENST00000510940 CSRNP3Q8WYN3 585 aa22.11■■□□□ 1.13
LETM1-204ENST00000510940 TDRD9Q8NDG6 1382 aaKnown RBP22.11■■□□□ 1.13
LETM1-204ENST00000510940 FAM9AQ8IZU1 332 aaPredicted RBP22.09■■□□□ 1.13
LETM1-204ENST00000510940 RUSC2Q8N2Y8 1516 aa22.08■■□□□ 1.13
LETM1-204ENST00000510940 ERICH3Q5RHP9 1530 aa22.07■■□□□ 1.12
LETM1-204ENST00000510940 ZNF608Q9ULD9 1512 aaPredicted RBP22.06■■□□□ 1.12
LETM1-204ENST00000510940 GRIN2BQ13224 1484 aa22.05■■□□□ 1.12
LETM1-204ENST00000510940 EIF4G3O43432 1585 aaKnown RBP22.04■■□□□ 1.12
LETM1-204ENST00000510940 AQRO60306 1485 aaKnown RBP eCLIP22.04■■□□□ 1.125e-8■□□□□ 10.1
LETM1-204ENST00000510940 IGF1RP08069 1367 aa22.02■■□□□ 1.12
LETM1-204ENST00000510940 PBRM1Q86U86 1689 aa22.02■■□□□ 1.12
LETM1-204ENST00000510940 CUL7Q14999 1698 aa22.01■■□□□ 1.11
LETM1-204ENST00000510940 CARMIL1Q5VZK9 1371 aa21.95■■□□□ 1.1
LETM1-204ENST00000510940 KIF21BO75037 1637 aa21.95■■□□□ 1.1
LETM1-204ENST00000510940 MAGI1Q96QZ7 1491 aaPredicted RBP21.94■■□□□ 1.1
LETM1-204ENST00000510940 PRXQ9BXM0 1461 aa21.93■■□□□ 1.1
LETM1-204ENST00000510940 FHAD1B1AJZ9 1412 aa21.9■■□□□ 1.1
LETM1-204ENST00000510940 RAPGEF2Q9Y4G8 1499 aa21.9■■□□□ 1.1
LETM1-204ENST00000510940 GOLGA3Q08378 1498 aa21.89■■□□□ 1.09
LETM1-204ENST00000510940 SNAPC4Q5SXM2 1469 aa21.88■■□□□ 1.09
LETM1-204ENST00000510940 ADAMTS12P58397 1594 aa21.87■■□□□ 1.09
LETM1-204ENST00000510940 SYNJ2O15056 1496 aa21.83■■□□□ 1.08
LETM1-204ENST00000510940 CHMP7Q8WUX9 453 aaPredicted RBP21.8■■□□□ 1.08
LETM1-204ENST00000510940 UBTFP17480 764 aaKnown RBP21.79■■□□□ 1.08
LETM1-204ENST00000510940 OSCARQ8IYS5 282 aa21.78■■□□□ 1.08
LETM1-204ENST00000510940 DNAJC5Q9H3Z4 198 aa21.77■■□□□ 1.08
LETM1-204ENST00000510940 LOC105371045A0A1W2PR82 267 aa21.74■■□□□ 1.07
LETM1-204ENST00000510940 GRIN2AQ12879 1464 aa21.74■■□□□ 1.07
LETM1-204ENST00000510940 TNIKQ9UKE5 1360 aa21.73■■□□□ 1.07
LETM1-204ENST00000510940 FBLN2P98095 1184 aa21.72■■□□□ 1.07
LETM1-204ENST00000510940 EHMT2Q96KQ7 1210 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms