RNA–Protein interactions for RNA: ENST00000475298.5

CCNL1-216, Transcript of cyclin L1, humanhuman

TSL 1 (best)

Gene CCNL1, Length 2,362 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNL1-216ENST00000475298 NISCHQ9Y2I1 1504 aa26.94■■□□□ 1.9
CCNL1-216ENST00000475298 SHROOM4Q9ULL8 1493 aa22.95■■□□□ 1.26
CCNL1-216ENST00000475298 CCDC180Q9P1Z9 1646 aa22.94■■□□□ 1.26
CCNL1-216ENST00000475298 ZCCHC6Q5VYS8 1495 aaKnown RBP22.76■■□□□ 1.23
CCNL1-216ENST00000475298 DCAF8L2P0C7V8 631 aa22.43■■□□□ 1.18
CCNL1-216ENST00000475298 SUPT5HO00267 1087 aaKnown RBP22.41■■□□□ 1.18
CCNL1-216ENST00000475298 DCAF1Q9Y4B6 1507 aa22.05■■□□□ 1.12
CCNL1-216ENST00000475298 HRCP23327 699 aa21.83■■□□□ 1.09
CCNL1-216ENST00000475298 CHIC1Q5VXU3 224 aa21.69■■□□□ 1.06
CCNL1-216ENST00000475298 MYO15BQ96JP2 1530 aa21.63■■□□□ 1.05
CCNL1-216ENST00000475298 SCRIBQ14160 1630 aa21.56■■□□□ 1.04
CCNL1-216ENST00000475298 PELP1Q8IZL8 1130 aaKnown RBP21.51■■□□□ 1.03
CCNL1-216ENST00000475298 ABCC9O60706 1549 aa21.46■■□□□ 1.03
CCNL1-216ENST00000475298 PPARGC1BQ86YN6 1023 aaKnown RBP21.33■■□□□ 1.01
CCNL1-216ENST00000475298 RSF1Q96T23 1441 aaPredicted RBP21.27■■□□□ 1
CCNL1-216ENST00000475298 NACADO15069 1562 aa21.23■□□□□ 0.99
CCNL1-216ENST00000475298 PCGF6Q9BYE7 350 aa21.14■□□□□ 0.97
CCNL1-216ENST00000475298 LOC105371045A0A1W2PR82 267 aa21.09■□□□□ 0.97
CCNL1-216ENST00000475298 RB1CC1Q8TDY2 1594 aa21.07■□□□□ 0.96
CCNL1-216ENST00000475298 CECR2Q9BXF3 1484 aa21.07■□□□□ 0.96
CCNL1-216ENST00000475298 MROH2BQ7Z745 1585 aa20.97■□□□□ 0.95
CCNL1-216ENST00000475298 WIZO95785 1651 aa20.87■□□□□ 0.93
CCNL1-216ENST00000475298 SCAF1Q9H7N4 1312 aaKnown RBP20.85■□□□□ 0.93
CCNL1-216ENST00000475298 TRIM41Q8WV44 630 aa20.85■□□□□ 0.93
CCNL1-216ENST00000475298 MYT1Q01538 1121 aa20.75■□□□□ 0.91
CCNL1-216ENST00000475298 FAM9AQ8IZU1 332 aaPredicted RBP20.73■□□□□ 0.91
CCNL1-216ENST00000475298 UNC13AQ9UPW8 1703 aa20.69■□□□□ 0.9
CCNL1-216ENST00000475298 BAZ1AQ9NRL2 1556 aaPredicted RBP20.69■□□□□ 0.9
CCNL1-216ENST00000475298 EHMT2Q96KQ7 1210 aa20.61■□□□□ 0.89
CCNL1-216ENST00000475298 SMARCA4P51532 1647 aa20.56■□□□□ 0.88
CCNL1-216ENST00000475298 EIF4G1Q04637 1599 aaKnown RBP20.5■□□□□ 0.87
CCNL1-216ENST00000475298 PABPN1Q86U42 306 aaKnown RBP eCLIP20.49■□□□□ 0.878e-6■□□□□ 8.9
CCNL1-216ENST00000475298 TOP2AP11388 1531 aaKnown RBP20.49■□□□□ 0.87
CCNL1-216ENST00000475298 TRIM26Q12899 539 aaPredicted RBP20.48■□□□□ 0.87
CCNL1-216ENST00000475298 CCDC88BA6NC98 1476 aa20.42■□□□□ 0.86
CCNL1-216ENST00000475298 BICRAQ9NZM4 1560 aa20.42■□□□□ 0.86
CCNL1-216ENST00000475298 SMARCA2P51531 1590 aa20.4■□□□□ 0.86
CCNL1-216ENST00000475298 ABCC8Q09428 1581 aa20.36■□□□□ 0.85
CCNL1-216ENST00000475298 ZEB1P37275 1124 aaPredicted RBP20.32■□□□□ 0.84
CCNL1-216ENST00000475298 ACIN1Q9UKV3 1341 aaKnown RBP20.2■□□□□ 0.82
CCNL1-216ENST00000475298 NEUROD1Q13562 356 aa20.14■□□□□ 0.81
CCNL1-216ENST00000475298 PEG3Q9GZU2 1588 aa20.13■□□□□ 0.81
CCNL1-216ENST00000475298 SOGA1O94964 1423 aa20.13■□□□□ 0.81
CCNL1-216ENST00000475298 ATAD2BQ9ULI0 1458 aa20.06■□□□□ 0.8
CCNL1-216ENST00000475298 RUSC2Q8N2Y8 1516 aa20.05■□□□□ 0.8
CCNL1-216ENST00000475298 GTF3C3Q9Y5Q9 886 aa20.02■□□□□ 0.8
CCNL1-216ENST00000475298 BAZ1BQ9UIG0 1483 aaKnown RBP20■□□□□ 0.79
CCNL1-216ENST00000475298 WRNQ14191 1432 aaPredicted RBP eCLIP19.98■□□□□ 0.792e-6■■■■□ 22.3
CCNL1-216ENST00000475298 CSRNP3Q8WYN3 585 aa19.95■□□□□ 0.78
CCNL1-216ENST00000475298 CEP162Q5TB80 1403 aa19.94■□□□□ 0.78
CCNL1-216ENST00000475298 SYNJ1O43426 1573 aa19.93■□□□□ 0.78
CCNL1-216ENST00000475298 EEA1Q15075 1411 aa19.91■□□□□ 0.78
CCNL1-216ENST00000475298 TTBK1Q5TCY1 1321 aaPredicted RBP19.9■□□□□ 0.78
CCNL1-216ENST00000475298 UBTFP17480 764 aaKnown RBP19.89■□□□□ 0.77
CCNL1-216ENST00000475298 TNIKQ9UKE5 1360 aa19.89■□□□□ 0.77
CCNL1-216ENST00000475298 GOLGA3Q08378 1498 aa19.81■□□□□ 0.76
CCNL1-216ENST00000475298 CENPBP07199 599 aaPredicted RBP19.8■□□□□ 0.76
CCNL1-216ENST00000475298 DNAJC5BQ9UF47 199 aa19.8■□□□□ 0.76
CCNL1-216ENST00000475298 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.77■□□□□ 0.75
CCNL1-216ENST00000475298 CEP164Q9UPV0 1460 aa19.71■□□□□ 0.75
CCNL1-216ENST00000475298 KIF21BO75037 1637 aa19.69■□□□□ 0.74
CCNL1-216ENST00000475298 NCAPD3P42695 1498 aa19.66■□□□□ 0.74
CCNL1-216ENST00000475298 CCER1Q8TC90 406 aaPredicted RBP19.66■□□□□ 0.74
CCNL1-216ENST00000475298 TOP2BQ02880 1626 aa19.66■□□□□ 0.74
CCNL1-216ENST00000475298 HMGXB3Q12766 1538 aa19.65■□□□□ 0.74
CCNL1-216ENST00000475298 RAPGEF2Q9Y4G8 1499 aa19.64■□□□□ 0.73
CCNL1-216ENST00000475298 DIEXFQ68CQ4 756 aaKnown RBP19.64■□□□□ 0.73
CCNL1-216ENST00000475298 RANGAP1P46060 587 aaPredicted RBP19.6■□□□□ 0.73
CCNL1-216ENST00000475298 CLIP1P30622 1438 aa19.6■□□□□ 0.73
CCNL1-216ENST00000475298 BIVM-ERCC5R4GMW8 1640 aa19.59■□□□□ 0.73
CCNL1-216ENST00000475298 CUX1P39880 1505 aa19.52■□□□□ 0.72
CCNL1-216ENST00000475298 VPS8Q8N3P4 1428 aa19.48■□□□□ 0.71
CCNL1-216ENST00000475298 CFTRP13569 1480 aa19.48■□□□□ 0.71
CCNL1-216ENST00000475298 BCL11AQ9H165 835 aa19.43■□□□□ 0.7
CCNL1-216ENST00000475298 PRXQ9BXM0 1461 aa19.42■□□□□ 0.7
CCNL1-216ENST00000475298 HNRNPUL2Q1KMD3 747 aaKnown RBP19.39■□□□□ 0.69
CCNL1-216ENST00000475298 ERICH3Q5RHP9 1530 aa19.39■□□□□ 0.69
CCNL1-216ENST00000475298 APLP2Q06481 763 aa19.37■□□□□ 0.69
CCNL1-216ENST00000475298 KIF27Q86VH2 1401 aa19.36■□□□□ 0.69
CCNL1-216ENST00000475298 PRDM2Q13029 1718 aa19.32■□□□□ 0.68
CCNL1-216ENST00000475298 ARAP1Q96P48 1450 aa19.32■□□□□ 0.68
CCNL1-216ENST00000475298 CC2D2AQ9P2K1 1620 aa19.29■□□□□ 0.68
CCNL1-216ENST00000475298 CADPSQ9ULU8 1353 aa19.29■□□□□ 0.68
CCNL1-216ENST00000475298 YTHDC1Q96MU7 727 aaKnown RBP19.29■□□□□ 0.68
CCNL1-216ENST00000475298 CUX2O14529 1486 aa19.24■□□□□ 0.67
CCNL1-216ENST00000475298 ANP32EQ9BTT0 268 aa19.22■□□□□ 0.67
CCNL1-216ENST00000475298 KANK4Q5T7N3 995 aaPredicted RBP19.21■□□□□ 0.67
CCNL1-216ENST00000475298 FGD5Q6ZNL6 1462 aa19.2■□□□□ 0.66
CCNL1-216ENST00000475298 ZNF316A6NFI3 1004 aaPredicted RBP19.19■□□□□ 0.66
CCNL1-216ENST00000475298 IGF1RP08069 1367 aa19.18■□□□□ 0.66
CCNL1-216ENST00000475298 ARHGAP35Q9NRY4 1499 aa19.17■□□□□ 0.66
CCNL1-216ENST00000475298 MIER1Q8N108 512 aa19.13■□□□□ 0.65
CCNL1-216ENST00000475298 FANCD2Q9BXW9 1451 aa19.13■□□□□ 0.65
CCNL1-216ENST00000475298 CARMIL1Q5VZK9 1371 aa19.1■□□□□ 0.65
CCNL1-216ENST00000475298 NESP48681 1621 aa19.09■□□□□ 0.65
CCNL1-216ENST00000475298 RAD54L2Q9Y4B4 1467 aa19.04■□□□□ 0.64
CCNL1-216ENST00000475298 TSHZ2Q9NRE2 1034 aa19.04■□□□□ 0.64
CCNL1-216ENST00000475298 SUPT16HQ9Y5B9 1047 aaKnown RBP19.01■□□□□ 0.63
CCNL1-216ENST00000475298 DNMBPQ6XZF7 1577 aa19■□□□□ 0.63
CCNL1-216ENST00000475298 DNAJC5Q9H3Z4 198 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms