Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 AC019193.1-201ENST00000506678 823 ntBASIC14.47□□□□□ -0.09
COL28A1Q2UY09 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 AC015910.1-201ENST00000579400 975 ntBASIC14.47□□□□□ -0.09
COL28A1Q2UY09 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 AL136301.1-201ENST00000615830 422 ntBASIC14.47□□□□□ -0.09
COL28A1Q2UY09 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL28A1Q2UY09 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 AC136604.1-201ENST00000418535 575 ntBASIC14.46□□□□□ -0.09
COL28A1Q2UY09 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 CTBP2P4-201ENST00000513884 920 ntBASIC14.46□□□□□ -0.09
COL28A1Q2UY09 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 AC097359.3-201ENST00000603982 1210 ntBASIC14.46□□□□□ -0.09
COL28A1Q2UY09 AP001527.2-201ENST00000614441 631 ntBASIC14.46□□□□□ -0.09
COL28A1Q2UY09 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL28A1Q2UY09 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.46□□□□□ -0.1
COL28A1Q2UY09 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.46□□□□□ -0.1
COL28A1Q2UY09 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
COL28A1Q2UY09 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.46□□□□□ -0.1
COL28A1Q2UY09 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
COL28A1Q2UY09 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 TPM3P8-201ENST00000330554 643 ntBASIC14.45□□□□□ -0.1
COL28A1Q2UY09 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms