RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 NISCHQ9Y2I1 1504 aa35.87■■■■□ 3.33
HMGN3-201ENST00000275036 CCDC180Q9P1Z9 1646 aa32.05■■■□□ 2.72
HMGN3-201ENST00000275036 ABCC9O60706 1549 aa31.77■■■□□ 2.68
HMGN3-201ENST00000275036 RB1CC1Q8TDY2 1594 aa30.33■■■□□ 2.45
HMGN3-201ENST00000275036 NACADO15069 1562 aa30.2■■■□□ 2.42
HMGN3-201ENST00000275036 DCAF8L2P0C7V8 631 aa30.03■■■□□ 2.4
HMGN3-201ENST00000275036 MYO15BQ96JP2 1530 aa29.88■■■□□ 2.37
HMGN3-201ENST00000275036 ZCCHC6Q5VYS8 1495 aaKnown RBP29.81■■■□□ 2.36
HMGN3-201ENST00000275036 UNC13AQ9UPW8 1703 aa29.76■■■□□ 2.35
HMGN3-201ENST00000275036 DCAF1Q9Y4B6 1507 aa29.62■■■□□ 2.33
HMGN3-201ENST00000275036 PABPN1Q86U42 306 aaKnown RBP eCLIP29.6■■■□□ 2.33
HMGN3-201ENST00000275036 DNAJC5BQ9UF47 199 aa29.58■■■□□ 2.33
HMGN3-201ENST00000275036 BICRAQ9NZM4 1560 aa29.55■■■□□ 2.32
HMGN3-201ENST00000275036 SCRIBQ14160 1630 aa29.26■■■□□ 2.27
HMGN3-201ENST00000275036 SHROOM4Q9ULL8 1493 aa29.05■■■□□ 2.24
HMGN3-201ENST00000275036 EIF4G1Q04637 1599 aaKnown RBP28.75■■■□□ 2.19
HMGN3-201ENST00000275036 CC2D2AQ9P2K1 1620 aa28.73■■■□□ 2.19
HMGN3-201ENST00000275036 CECR2Q9BXF3 1484 aa28.57■■■□□ 2.16
HMGN3-201ENST00000275036 SMARCA4P51532 1647 aa27.93■■■□□ 2.06
HMGN3-201ENST00000275036 NCAPD3P42695 1498 aa27.89■■■□□ 2.05
HMGN3-201ENST00000275036 ATAD2BQ9ULI0 1458 aa27.87■■■□□ 2.05
HMGN3-201ENST00000275036 BAZ1AQ9NRL2 1556 aaPredicted RBP27.79■■■□□ 2.04
HMGN3-201ENST00000275036 SMARCA2P51531 1590 aa27.76■■■□□ 2.03
HMGN3-201ENST00000275036 HMGXB3Q12766 1538 aa27.72■■■□□ 2.03
HMGN3-201ENST00000275036 MROH2BQ7Z745 1585 aa27.68■■■□□ 2.02
HMGN3-201ENST00000275036 PEG3Q9GZU2 1588 aa27.65■■■□□ 2.02
HMGN3-201ENST00000275036 BAZ1BQ9UIG0 1483 aaKnown RBP27.58■■■□□ 2.01
HMGN3-201ENST00000275036 NESP48681 1621 aa27.42■■□□□ 1.98
HMGN3-201ENST00000275036 WIZO95785 1651 aa27.36■■□□□ 1.97
HMGN3-201ENST00000275036 ERCC6Q03468 1493 aa27.34■■□□□ 1.97
HMGN3-201ENST00000275036 CUX2O14529 1486 aa27.21■■□□□ 1.95
HMGN3-201ENST00000275036 LAMC3Q9Y6N6 1575 aa27.2■■□□□ 1.94
HMGN3-201ENST00000275036 RSF1Q96T23 1441 aaPredicted RBP27.18■■□□□ 1.94
HMGN3-201ENST00000275036 THOC2Q8NI27 1593 aaKnown RBP27.09■■□□□ 1.93
HMGN3-201ENST00000275036 KIF21AQ7Z4S6 1674 aa27.08■■□□□ 1.92
HMGN3-201ENST00000275036 CADPSQ9ULU8 1353 aa27.03■■□□□ 1.92
HMGN3-201ENST00000275036 TOP2AP11388 1531 aaKnown RBP27■■□□□ 1.91
HMGN3-201ENST00000275036 PDS5BQ9NTI5 1447 aa26.99■■□□□ 1.91
HMGN3-201ENST00000275036 DNAJC5Q9H3Z4 198 aa26.85■■□□□ 1.89
HMGN3-201ENST00000275036 CFTRP13569 1480 aa26.81■■□□□ 1.88
HMGN3-201ENST00000275036 MRC2Q9UBG0 1479 aa26.8■■□□□ 1.88
HMGN3-201ENST00000275036 WDR62O43379 1518 aa26.75■■□□□ 1.87
HMGN3-201ENST00000275036 FANCD2Q9BXW9 1451 aa26.74■■□□□ 1.87
HMGN3-201ENST00000275036 CEP164Q9UPV0 1460 aa26.74■■□□□ 1.87
HMGN3-201ENST00000275036 CCDC88BA6NC98 1476 aa26.69■■□□□ 1.86
HMGN3-201ENST00000275036 PRDM2Q13029 1718 aa26.6■■□□□ 1.85
HMGN3-201ENST00000275036 URB2Q14146 1524 aaKnown RBP26.55■■□□□ 1.84
HMGN3-201ENST00000275036 TOPBP1Q92547 1522 aa26.29■■□□□ 1.8
HMGN3-201ENST00000275036 DNMBPQ6XZF7 1577 aa26.22■■□□□ 1.79
HMGN3-201ENST00000275036 ZNF608Q9ULD9 1512 aaPredicted RBP26.19■■□□□ 1.78
HMGN3-201ENST00000275036 IFT140Q96RY7 1462 aa26.18■■□□□ 1.78
HMGN3-201ENST00000275036 ABCC8Q09428 1581 aa26.16■■□□□ 1.78
HMGN3-201ENST00000275036 SUPT5HO00267 1087 aaKnown RBP26.15■■□□□ 1.78
HMGN3-201ENST00000275036 TARBP1Q13395 1621 aaKnown RBP26.07■■□□□ 1.76
HMGN3-201ENST00000275036 EIF4G3O43432 1585 aaKnown RBP26.06■■□□□ 1.76
HMGN3-201ENST00000275036 POLA1P09884 1462 aaPredicted RBP26.05■■□□□ 1.76
HMGN3-201ENST00000275036 CUX1P39880 1505 aa25.98■■□□□ 1.75
HMGN3-201ENST00000275036 RAD54L2Q9Y4B4 1467 aa25.97■■□□□ 1.75
HMGN3-201ENST00000275036 OSCARQ8IYS5 282 aa25.95■■□□□ 1.74
HMGN3-201ENST00000275036 AQRO60306 1485 aaKnown RBP eCLIP25.95■■□□□ 1.74
HMGN3-201ENST00000275036 FGD5Q6ZNL6 1462 aa25.92■■□□□ 1.74
HMGN3-201ENST00000275036 SOGA1O94964 1423 aa25.88■■□□□ 1.73
HMGN3-201ENST00000275036 TDRD9Q8NDG6 1382 aaKnown RBP25.82■■□□□ 1.72
HMGN3-201ENST00000275036 CHD1O14646 1710 aa25.81■■□□□ 1.72
HMGN3-201ENST00000275036 WDR97A6NE52 1622 aa25.79■■□□□ 1.72
HMGN3-201ENST00000275036 TRIM41Q8WV44 630 aa25.78■■□□□ 1.72
HMGN3-201ENST00000275036 RIMBP3CA6NJZ7 1639 aa25.71■■□□□ 1.71
HMGN3-201ENST00000275036 RIMBP3BA6NNM3 1639 aa25.71■■□□□ 1.71
HMGN3-201ENST00000275036 RIMBP3Q9UFD9 1639 aa25.71■■□□□ 1.71
HMGN3-201ENST00000275036 SNAPC4Q5SXM2 1469 aa25.7■■□□□ 1.7
HMGN3-201ENST00000275036 ARHGEF11O15085 1522 aa25.65■■□□□ 1.7
HMGN3-201ENST00000275036 SYNJ1O43426 1573 aa25.65■■□□□ 1.7
HMGN3-201ENST00000275036 BIVM-ERCC5R4GMW8 1640 aa25.64■■□□□ 1.7
HMGN3-201ENST00000275036 ABCA10Q8WWZ4 1543 aa25.63■■□□□ 1.69
HMGN3-201ENST00000275036 FBLN2P98095 1184 aa25.63■■□□□ 1.69
HMGN3-201ENST00000275036 GRIN2BQ13224 1484 aa25.63■■□□□ 1.69
HMGN3-201ENST00000275036 PBRM1Q86U86 1689 aa25.62■■□□□ 1.69
HMGN3-201ENST00000275036 TOP2BQ02880 1626 aa25.62■■□□□ 1.69
HMGN3-201ENST00000275036 ABCA5Q8WWZ7 1642 aa25.62■■□□□ 1.69
HMGN3-201ENST00000275036 WRNQ14191 1432 aaPredicted RBP eCLIP25.6■■□□□ 1.69
HMGN3-201ENST00000275036 MAGI1Q96QZ7 1491 aaPredicted RBP25.6■■□□□ 1.69
HMGN3-201ENST00000275036 GAPVD1Q14C86 1478 aa25.59■■□□□ 1.69
HMGN3-201ENST00000275036 SYNJ2O15056 1496 aa25.53■■□□□ 1.68
HMGN3-201ENST00000275036 CLASP1Q7Z460 1538 aa25.52■■□□□ 1.68
HMGN3-201ENST00000275036 CHMP7Q8WUX9 453 aaPredicted RBP25.47■■□□□ 1.67
HMGN3-201ENST00000275036 ARAP1Q96P48 1450 aa25.44■■□□□ 1.66
HMGN3-201ENST00000275036 ADAMTS12P58397 1594 aa25.39■■□□□ 1.66
HMGN3-201ENST00000275036 CYB5RLQ6IPT4 315 aa25.36■■□□□ 1.65
HMGN3-201ENST00000275036 GRIN2AQ12879 1464 aa25.34■■□□□ 1.65
HMGN3-201ENST00000275036 ERICH3Q5RHP9 1530 aa25.3■■□□□ 1.64
HMGN3-201ENST00000275036 CEP170Q5SW79 1584 aa25.28■■□□□ 1.64
HMGN3-201ENST00000275036 FHAD1B1AJZ9 1412 aa25.26■■□□□ 1.63
HMGN3-201ENST00000275036 NUP160Q12769 1436 aa25.24■■□□□ 1.63
HMGN3-201ENST00000275036 ERCC6L2Q5T890 1561 aa25.18■■□□□ 1.62
HMGN3-201ENST00000275036 SHROOM2Q13796 1616 aa25.13■■□□□ 1.61
HMGN3-201ENST00000275036 IGF1RP08069 1367 aa25.05■■□□□ 1.6
HMGN3-201ENST00000275036 KIF27Q86VH2 1401 aa25.05■■□□□ 1.6
HMGN3-201ENST00000275036 RUSC2Q8N2Y8 1516 aa25.04■■□□□ 1.6
HMGN3-201ENST00000275036 CUL7Q14999 1698 aa25■■□□□ 1.59
HMGN3-201ENST00000275036 PRG4Q92954 1404 aaPredicted RBP24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms