RNA–Protein interactions for RNA: ENST00000533801.6

ATP2C1-224, Transcript of ATPase secretory pathway Ca2+ transporting 1, humanhuman

TSL 1 (best) BASIC

Gene ATP2C1, Length 3,690 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2C1-224ENST00000533801 NISCHQ9Y2I1 1504 aa32.93■■■□□ 2.86
ATP2C1-224ENST00000533801 SHROOM4Q9ULL8 1493 aa28.9■■■□□ 2.22
ATP2C1-224ENST00000533801 DCAF8L2P0C7V8 631 aa28.79■■■□□ 2.2
ATP2C1-224ENST00000533801 SUPT5HO00267 1087 aaKnown RBP28.26■■■□□ 2.11
ATP2C1-224ENST00000533801 CCDC180Q9P1Z9 1646 aa27.71■■■□□ 2.03
ATP2C1-224ENST00000533801 ZCCHC6Q5VYS8 1495 aaKnown RBP27.67■■■□□ 2.02
ATP2C1-224ENST00000533801 ABCC9O60706 1549 aa26.95■■□□□ 1.9
ATP2C1-224ENST00000533801 CHIC1Q5VXU3 224 aa26.78■■□□□ 1.88
ATP2C1-224ENST00000533801 SCRIBQ14160 1630 aa26.66■■□□□ 1.86
ATP2C1-224ENST00000533801 DCAF1Q9Y4B6 1507 aa26.55■■□□□ 1.84
ATP2C1-224ENST00000533801 EHMT2Q96KQ7 1210 aa26.47■■□□□ 1.83
ATP2C1-224ENST00000533801 MYO15BQ96JP2 1530 aa26.45■■□□□ 1.82
ATP2C1-224ENST00000533801 LOC105371045A0A1W2PR82 267 aa26.36■■□□□ 1.81
ATP2C1-224ENST00000533801 FAM9AQ8IZU1 332 aaPredicted RBP26.3■■□□□ 1.8
ATP2C1-224ENST00000533801 RSF1Q96T23 1441 aaPredicted RBP26.11■■□□□ 1.77
ATP2C1-224ENST00000533801 TRIM41Q8WV44 630 aa26.08■■□□□ 1.77
ATP2C1-224ENST00000533801 PCGF6Q9BYE7 350 aa26.08■■□□□ 1.77
ATP2C1-224ENST00000533801 PABPN1Q86U42 306 aaKnown RBP eCLIP26.02■■□□□ 1.76
ATP2C1-224ENST00000533801 CECR2Q9BXF3 1484 aa26.02■■□□□ 1.76
ATP2C1-224ENST00000533801 NACADO15069 1562 aa25.93■■□□□ 1.74
ATP2C1-224ENST00000533801 RB1CC1Q8TDY2 1594 aa25.81■■□□□ 1.72
ATP2C1-224ENST00000533801 MROH2BQ7Z745 1585 aa25.76■■□□□ 1.71
ATP2C1-224ENST00000533801 WIZO95785 1651 aa25.59■■□□□ 1.69
ATP2C1-224ENST00000533801 PPARGC1BQ86YN6 1023 aaKnown RBP25.59■■□□□ 1.69
ATP2C1-224ENST00000533801 TTBK1Q5TCY1 1321 aaPredicted RBP25.45■■□□□ 1.67
ATP2C1-224ENST00000533801 HRCP23327 699 aa25.4■■□□□ 1.66
ATP2C1-224ENST00000533801 BAZ1AQ9NRL2 1556 aaPredicted RBP25.3■■□□□ 1.64
ATP2C1-224ENST00000533801 TRIM26Q12899 539 aaPredicted RBP25.24■■□□□ 1.63
ATP2C1-224ENST00000533801 RANGAP1P46060 587 aaPredicted RBP25.16■■□□□ 1.62
ATP2C1-224ENST00000533801 UNC13AQ9UPW8 1703 aa25.13■■□□□ 1.61
ATP2C1-224ENST00000533801 ABCC8Q09428 1581 aa25.12■■□□□ 1.61
ATP2C1-224ENST00000533801 CCDC88BA6NC98 1476 aa25.11■■□□□ 1.61
ATP2C1-224ENST00000533801 SMARCA4P51532 1647 aa25.1■■□□□ 1.61
ATP2C1-224ENST00000533801 UBTFP17480 764 aaKnown RBP25.08■■□□□ 1.61
ATP2C1-224ENST00000533801 TOP2AP11388 1531 aaKnown RBP24.97■■□□□ 1.59
ATP2C1-224ENST00000533801 BICRAQ9NZM4 1560 aa24.93■■□□□ 1.58
ATP2C1-224ENST00000533801 SOGA1O94964 1423 aa24.87■■□□□ 1.57
ATP2C1-224ENST00000533801 SMARCA2P51531 1590 aa24.87■■□□□ 1.57
ATP2C1-224ENST00000533801 CSRNP3Q8WYN3 585 aa24.78■■□□□ 1.56
ATP2C1-224ENST00000533801 RUSC2Q8N2Y8 1516 aa24.76■■□□□ 1.55
ATP2C1-224ENST00000533801 BAZ1BQ9UIG0 1483 aaKnown RBP24.75■■□□□ 1.55
ATP2C1-224ENST00000533801 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.71■■□□□ 1.55
ATP2C1-224ENST00000533801 ATAD2BQ9ULI0 1458 aa24.68■■□□□ 1.54
ATP2C1-224ENST00000533801 WRNQ14191 1432 aaPredicted RBP eCLIP24.66■■□□□ 1.54
ATP2C1-224ENST00000533801 CCER1Q8TC90 406 aaPredicted RBP24.6■■□□□ 1.53
ATP2C1-224ENST00000533801 EIF4G1Q04637 1599 aaKnown RBP24.59■■□□□ 1.53
ATP2C1-224ENST00000533801 CEP162Q5TB80 1403 aa24.54■■□□□ 1.52
ATP2C1-224ENST00000533801 APLP2Q06481 763 aa24.43■■□□□ 1.5
ATP2C1-224ENST00000533801 HNRNPUL2Q1KMD3 747 aaKnown RBP24.41■■□□□ 1.5
ATP2C1-224ENST00000533801 ZEB1P37275 1124 aaPredicted RBP24.41■■□□□ 1.5
ATP2C1-224ENST00000533801 SYNJ1O43426 1573 aa24.38■■□□□ 1.49
ATP2C1-224ENST00000533801 TNIKQ9UKE5 1360 aa24.35■■□□□ 1.49
ATP2C1-224ENST00000533801 GOLGA3Q08378 1498 aa24.31■■□□□ 1.48
ATP2C1-224ENST00000533801 PEG3Q9GZU2 1588 aa24.28■■□□□ 1.48
ATP2C1-224ENST00000533801 EEA1Q15075 1411 aa24.26■■□□□ 1.47
ATP2C1-224ENST00000533801 CLIP1P30622 1438 aa24.21■■□□□ 1.47
ATP2C1-224ENST00000533801 RAPGEF2Q9Y4G8 1499 aa24.2■■□□□ 1.46
ATP2C1-224ENST00000533801 ATP1B4Q9UN42 357 aaPredicted RBP24.17■■□□□ 1.46
ATP2C1-224ENST00000533801 CEP164Q9UPV0 1460 aa24.17■■□□□ 1.46
ATP2C1-224ENST00000533801 NCAPD3P42695 1498 aa24.1■■□□□ 1.45
ATP2C1-224ENST00000533801 ITGAEP38570 1179 aa24.1■■□□□ 1.45
ATP2C1-224ENST00000533801 P3H3Q8IVL6 736 aa24.07■■□□□ 1.44
ATP2C1-224ENST00000533801 CUX1P39880 1505 aa23.94■■□□□ 1.42
ATP2C1-224ENST00000533801 DNAJC5BQ9UF47 199 aa23.94■■□□□ 1.42
ATP2C1-224ENST00000533801 KIF27Q86VH2 1401 aa23.93■■□□□ 1.42
ATP2C1-224ENST00000533801 TOP2BQ02880 1626 aa23.92■■□□□ 1.42
ATP2C1-224ENST00000533801 HMGXB3Q12766 1538 aa23.92■■□□□ 1.42
ATP2C1-224ENST00000533801 CUX2O14529 1486 aa23.9■■□□□ 1.42
ATP2C1-224ENST00000533801 CADPSQ9ULU8 1353 aa23.88■■□□□ 1.41
ATP2C1-224ENST00000533801 KANK4Q5T7N3 995 aaPredicted RBP23.88■■□□□ 1.41
ATP2C1-224ENST00000533801 CFTRP13569 1480 aa23.88■■□□□ 1.41
ATP2C1-224ENST00000533801 VPS8Q8N3P4 1428 aa23.87■■□□□ 1.41
ATP2C1-224ENST00000533801 CC2D2AQ9P2K1 1620 aa23.85■■□□□ 1.41
ATP2C1-224ENST00000533801 KIF21BO75037 1637 aa23.83■■□□□ 1.41
ATP2C1-224ENST00000533801 NESP48681 1621 aa23.8■■□□□ 1.4
ATP2C1-224ENST00000533801 DIEXFQ68CQ4 756 aaKnown RBP23.75■■□□□ 1.39
ATP2C1-224ENST00000533801 FGD5Q6ZNL6 1462 aa23.71■■□□□ 1.39
ATP2C1-224ENST00000533801 CARMIL1Q5VZK9 1371 aa23.69■■□□□ 1.38
ATP2C1-224ENST00000533801 PRXQ9BXM0 1461 aa23.69■■□□□ 1.38
ATP2C1-224ENST00000533801 FANCD2Q9BXW9 1451 aa23.69■■□□□ 1.38
ATP2C1-224ENST00000533801 RAD54L2Q9Y4B4 1467 aa23.68■■□□□ 1.38
ATP2C1-224ENST00000533801 BIVM-ERCC5R4GMW8 1640 aa23.68■■□□□ 1.38
ATP2C1-224ENST00000533801 YTHDC1Q96MU7 727 aaKnown RBP23.67■■□□□ 1.38
ATP2C1-224ENST00000533801 IGF1RP08069 1367 aa23.67■■□□□ 1.38
ATP2C1-224ENST00000533801 FAM50AQ14320 339 aaKnown RBP23.66■■□□□ 1.38
ATP2C1-224ENST00000533801 ARAP1Q96P48 1450 aa23.65■■□□□ 1.38
ATP2C1-224ENST00000533801 ARID3CA6NKF2 412 aa23.62■■□□□ 1.37
ATP2C1-224ENST00000533801 TDRD9Q8NDG6 1382 aaKnown RBP23.59■■□□□ 1.37
ATP2C1-224ENST00000533801 ZNF316A6NFI3 1004 aaPredicted RBP23.52■■□□□ 1.36
ATP2C1-224ENST00000533801 ERICH3Q5RHP9 1530 aa23.51■■□□□ 1.35
ATP2C1-224ENST00000533801 ARHGAP35Q9NRY4 1499 aa23.51■■□□□ 1.35
ATP2C1-224ENST00000533801 FHOD3Q2V2M9 1422 aa23.44■■□□□ 1.34
ATP2C1-224ENST00000533801 POLA1P09884 1462 aaPredicted RBP23.41■■□□□ 1.34
ATP2C1-224ENST00000533801 NEUROD1Q13562 356 aa23.4■■□□□ 1.34
ATP2C1-224ENST00000533801 TOPBP1Q92547 1522 aa23.39■■□□□ 1.34
ATP2C1-224ENST00000533801 CCNB3Q8WWL7 1395 aa23.36■■□□□ 1.33
ATP2C1-224ENST00000533801 SCAF1Q9H7N4 1312 aaKnown RBP23.34■■□□□ 1.33
ATP2C1-224ENST00000533801 FBLN2P98095 1184 aa23.32■■□□□ 1.32
ATP2C1-224ENST00000533801 MIER1Q8N108 512 aa23.3■■□□□ 1.32
ATP2C1-224ENST00000533801 PDS5BQ9NTI5 1447 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms