RNA–Protein interactions for RNA: ENST00000443700.5

AP1S3-206, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 1 (best) BASIC

Gene AP1S3, Length 1,785 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-206ENST00000443700 NISCHQ9Y2I1 1504 aa31.21■■■□□ 2.59
AP1S3-206ENST00000443700 CCDC180Q9P1Z9 1646 aa26.62■■□□□ 1.85
AP1S3-206ENST00000443700 SHROOM4Q9ULL8 1493 aa26.54■■□□□ 1.84
AP1S3-206ENST00000443700 ZCCHC6Q5VYS8 1495 aaKnown RBP26.52■■□□□ 1.84
AP1S3-206ENST00000443700 SUPT5HO00267 1087 aaKnown RBP26.19■■□□□ 1.78
AP1S3-206ENST00000443700 DCAF1Q9Y4B6 1507 aa25.77■■□□□ 1.72
AP1S3-206ENST00000443700 MYO15BQ96JP2 1530 aa25.76■■□□□ 1.71
AP1S3-206ENST00000443700 CHIC1Q5VXU3 224 aa25.73■■□□□ 1.71
AP1S3-206ENST00000443700 HRCP23327 699 aa25.61■■□□□ 1.69
AP1S3-206ENST00000443700 DCAF8L2P0C7V8 631 aa25.39■■□□□ 1.66
AP1S3-206ENST00000443700 PCGF6Q9BYE7 350 aa25.21■■□□□ 1.63
AP1S3-206ENST00000443700 ABCC9O60706 1549 aa25.16■■□□□ 1.62
AP1S3-206ENST00000443700 TRIM26Q12899 539 aaPredicted RBP24.82■■□□□ 1.56
AP1S3-206ENST00000443700 LOC105371045A0A1W2PR82 267 aa24.82■■□□□ 1.56
AP1S3-206ENST00000443700 PPARGC1BQ86YN6 1023 aaKnown RBP24.78■■□□□ 1.56
AP1S3-206ENST00000443700 SCRIBQ14160 1630 aa24.75■■□□□ 1.55
AP1S3-206ENST00000443700 RSF1Q96T23 1441 aaPredicted RBP24.74■■□□□ 1.55
AP1S3-206ENST00000443700 RB1CC1Q8TDY2 1594 aa24.7■■□□□ 1.54
AP1S3-206ENST00000443700 ZEB1P37275 1124 aaPredicted RBP24.59■■□□□ 1.53
AP1S3-206ENST00000443700 TRIM41Q8WV44 630 aa24.49■■□□□ 1.51
AP1S3-206ENST00000443700 NACADO15069 1562 aa24.42■■□□□ 1.5
AP1S3-206ENST00000443700 MROH2BQ7Z745 1585 aa24.2■■□□□ 1.46
AP1S3-206ENST00000443700 BAZ1AQ9NRL2 1556 aaPredicted RBP24.17■■□□□ 1.46
AP1S3-206ENST00000443700 CECR2Q9BXF3 1484 aa24.16■■□□□ 1.46
AP1S3-206ENST00000443700 FAM9AQ8IZU1 332 aaPredicted RBP24.14■■□□□ 1.45
AP1S3-206ENST00000443700 WIZO95785 1651 aa24.13■■□□□ 1.45
AP1S3-206ENST00000443700 EIF4G1Q04637 1599 aaKnown RBP24.1■■□□□ 1.45
AP1S3-206ENST00000443700 PELP1Q8IZL8 1130 aaKnown RBP24.01■■□□□ 1.43
AP1S3-206ENST00000443700 TOP2AP11388 1531 aaKnown RBP23.88■■□□□ 1.41
AP1S3-206ENST00000443700 EHMT2Q96KQ7 1210 aa23.8■■□□□ 1.4
AP1S3-206ENST00000443700 WRNQ14191 1432 aaPredicted RBP eCLIP23.79■■□□□ 1.4
AP1S3-206ENST00000443700 SMARCA4P51532 1647 aa23.76■■□□□ 1.39
AP1S3-206ENST00000443700 SCAF1Q9H7N4 1312 aaKnown RBP23.72■■□□□ 1.39
AP1S3-206ENST00000443700 SMARCA2P51531 1590 aa23.7■■□□□ 1.38
AP1S3-206ENST00000443700 CCER1Q8TC90 406 aaPredicted RBP23.67■■□□□ 1.38
AP1S3-206ENST00000443700 EEA1Q15075 1411 aa23.66■■□□□ 1.38
AP1S3-206ENST00000443700 ABCC8Q09428 1581 aa23.66■■□□□ 1.38
AP1S3-206ENST00000443700 CCDC88BA6NC98 1476 aa23.63■■□□□ 1.37
AP1S3-206ENST00000443700 CEP162Q5TB80 1403 aa23.61■■□□□ 1.37
AP1S3-206ENST00000443700 UNC13AQ9UPW8 1703 aa23.59■■□□□ 1.37
AP1S3-206ENST00000443700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.59■■□□□ 1.37
AP1S3-206ENST00000443700 TNIKQ9UKE5 1360 aa23.59■■□□□ 1.37
AP1S3-206ENST00000443700 ACIN1Q9UKV3 1341 aaKnown RBP23.49■■□□□ 1.35
AP1S3-206ENST00000443700 GOLGA3Q08378 1498 aa23.45■■□□□ 1.34
AP1S3-206ENST00000443700 SOGA1O94964 1423 aa23.43■■□□□ 1.34
AP1S3-206ENST00000443700 CENPBP07199 599 aaPredicted RBP23.42■■□□□ 1.34
AP1S3-206ENST00000443700 DIEXFQ68CQ4 756 aaKnown RBP23.41■■□□□ 1.34
AP1S3-206ENST00000443700 CSRNP3Q8WYN3 585 aa23.36■■□□□ 1.33
AP1S3-206ENST00000443700 PEG3Q9GZU2 1588 aa23.35■■□□□ 1.33
AP1S3-206ENST00000443700 KIF21BO75037 1637 aa23.34■■□□□ 1.33
AP1S3-206ENST00000443700 NEUROD1Q13562 356 aa23.3■■□□□ 1.32
AP1S3-206ENST00000443700 CEP164Q9UPV0 1460 aa23.28■■□□□ 1.32
AP1S3-206ENST00000443700 RUSC2Q8N2Y8 1516 aa23.27■■□□□ 1.32
AP1S3-206ENST00000443700 UBTFP17480 764 aaKnown RBP23.24■■□□□ 1.31
AP1S3-206ENST00000443700 ZNF316A6NFI3 1004 aaPredicted RBP23.19■■□□□ 1.3
AP1S3-206ENST00000443700 TTBK1Q5TCY1 1321 aaPredicted RBP23.18■■□□□ 1.3
AP1S3-206ENST00000443700 BAZ1BQ9UIG0 1483 aaKnown RBP23.18■■□□□ 1.3
AP1S3-206ENST00000443700 SYNJ1O43426 1573 aa23.17■■□□□ 1.3
AP1S3-206ENST00000443700 BICRAQ9NZM4 1560 aa23.17■■□□□ 1.3
AP1S3-206ENST00000443700 GTF3C3Q9Y5Q9 886 aa23.14■■□□□ 1.3
AP1S3-206ENST00000443700 CLIP1P30622 1438 aa23.1■■□□□ 1.29
AP1S3-206ENST00000443700 VPS8Q8N3P4 1428 aa23.1■■□□□ 1.29
AP1S3-206ENST00000443700 MYT1Q01538 1121 aa22.99■■□□□ 1.27
AP1S3-206ENST00000443700 ATAD2BQ9ULI0 1458 aa22.96■■□□□ 1.27
AP1S3-206ENST00000443700 TOP2BQ02880 1626 aa22.95■■□□□ 1.26
AP1S3-206ENST00000443700 BIVM-ERCC5R4GMW8 1640 aa22.93■■□□□ 1.26
AP1S3-206ENST00000443700 APLP2Q06481 763 aa22.93■■□□□ 1.26
AP1S3-206ENST00000443700 RAPGEF2Q9Y4G8 1499 aa22.91■■□□□ 1.26
AP1S3-206ENST00000443700 ERICH3Q5RHP9 1530 aa22.9■■□□□ 1.26
AP1S3-206ENST00000443700 HNRNPUL2Q1KMD3 747 aaKnown RBP22.88■■□□□ 1.25
AP1S3-206ENST00000443700 CLSPNQ9HAW4 1339 aa22.85■■□□□ 1.25
AP1S3-206ENST00000443700 PABPN1Q86U42 306 aaKnown RBP eCLIP22.84■■□□□ 1.25
AP1S3-206ENST00000443700 MIER1Q8N108 512 aa22.77■■□□□ 1.24
AP1S3-206ENST00000443700 YTHDC1Q96MU7 727 aaKnown RBP22.76■■□□□ 1.23
AP1S3-206ENST00000443700 PRXQ9BXM0 1461 aa22.73■■□□□ 1.23
AP1S3-206ENST00000443700 ARAP1Q96P48 1450 aa22.71■■□□□ 1.23
AP1S3-206ENST00000443700 DHX57Q6P158 1386 aaKnown RBP22.65■■□□□ 1.22
AP1S3-206ENST00000443700 HMGXB3Q12766 1538 aa22.64■■□□□ 1.21
AP1S3-206ENST00000443700 RRBP1Q9P2E9 1410 aaKnown RBP22.62■■□□□ 1.21
AP1S3-206ENST00000443700 CUX2O14529 1486 aa22.61■■□□□ 1.21
AP1S3-206ENST00000443700 KIF27Q86VH2 1401 aa22.56■■□□□ 1.2
AP1S3-206ENST00000443700 CUX1P39880 1505 aa22.54■■□□□ 1.2
AP1S3-206ENST00000443700 PRDM2Q13029 1718 aa22.53■■□□□ 1.2
AP1S3-206ENST00000443700 RANGAP1P46060 587 aaPredicted RBP22.5■■□□□ 1.19
AP1S3-206ENST00000443700 NCAPD3P42695 1498 aa22.48■■□□□ 1.19
AP1S3-206ENST00000443700 CCNB3Q8WWL7 1395 aa22.45■■□□□ 1.18
AP1S3-206ENST00000443700 ARHGAP35Q9NRY4 1499 aa22.43■■□□□ 1.18
AP1S3-206ENST00000443700 MAP3K1Q13233 1512 aa22.43■■□□□ 1.18
AP1S3-206ENST00000443700 KANK4Q5T7N3 995 aaPredicted RBP22.42■■□□□ 1.18
AP1S3-206ENST00000443700 CFTRP13569 1480 aa22.4■■□□□ 1.18
AP1S3-206ENST00000443700 TIAM1Q13009 1591 aa22.36■■□□□ 1.17
AP1S3-206ENST00000443700 CFAP43Q8NDM7 1665 aa22.29■■□□□ 1.16
AP1S3-206ENST00000443700 MAPKBP1O60336 1514 aa22.27■■□□□ 1.16
AP1S3-206ENST00000443700 SUPT16HQ9Y5B9 1047 aaKnown RBP22.27■■□□□ 1.16
AP1S3-206ENST00000443700 RAB3GAP2Q9H2M9 1393 aa22.24■■□□□ 1.15
AP1S3-206ENST00000443700 LRRC9Q6ZRR7 1453 aa22.2■■□□□ 1.15
AP1S3-206ENST00000443700 SETD5Q9C0A6 1442 aa22.2■■□□□ 1.14
AP1S3-206ENST00000443700 FHAD1B1AJZ9 1412 aa22.19■■□□□ 1.14
AP1S3-206ENST00000443700 IGF1RP08069 1367 aa22.15■■□□□ 1.14
AP1S3-206ENST00000443700 PCF11O94913 1555 aaKnown RBP22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms