RNA–Protein interactions for RNA: ENST00000596676.2

SMCO4-206, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 BASIC

Gene SMCO4, Length 180 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-206ENST00000596676 NISCHQ9Y2I1 1504 aa36.96■■■■□ 3.51
SMCO4-206ENST00000596676 CCDC180Q9P1Z9 1646 aa32.58■■■□□ 2.81
SMCO4-206ENST00000596676 ABCC9O60706 1549 aa31.7■■■□□ 2.66
SMCO4-206ENST00000596676 DCAF8L2P0C7V8 631 aa30.89■■■□□ 2.54
SMCO4-206ENST00000596676 ZCCHC6Q5VYS8 1495 aaKnown RBP30.86■■■□□ 2.53
SMCO4-206ENST00000596676 NACADO15069 1562 aa30.55■■■□□ 2.48
SMCO4-206ENST00000596676 RB1CC1Q8TDY2 1594 aa30.51■■■□□ 2.47
SMCO4-206ENST00000596676 DCAF1Q9Y4B6 1507 aa30.49■■■□□ 2.47
SMCO4-206ENST00000596676 MYO15BQ96JP2 1530 aa30.43■■■□□ 2.46
SMCO4-206ENST00000596676 UNC13AQ9UPW8 1703 aa29.93■■■□□ 2.38
SMCO4-206ENST00000596676 SCRIBQ14160 1630 aa29.93■■■□□ 2.38
SMCO4-206ENST00000596676 PABPN1Q86U42 306 aaKnown RBP eCLIP29.77■■■□□ 2.36
SMCO4-206ENST00000596676 BICRAQ9NZM4 1560 aa29.69■■■□□ 2.34
SMCO4-206ENST00000596676 SHROOM4Q9ULL8 1493 aa29.65■■■□□ 2.34
SMCO4-206ENST00000596676 CECR2Q9BXF3 1484 aa28.87■■■□□ 2.21
SMCO4-206ENST00000596676 DNAJC5BQ9UF47 199 aa28.85■■■□□ 2.21
SMCO4-206ENST00000596676 EIF4G1Q04637 1599 aaKnown RBP28.82■■■□□ 2.2
SMCO4-206ENST00000596676 CC2D2AQ9P2K1 1620 aa28.63■■■□□ 2.17
SMCO4-206ENST00000596676 SMARCA4P51532 1647 aa28.6■■■□□ 2.17
SMCO4-206ENST00000596676 MROH2BQ7Z745 1585 aa28.58■■■□□ 2.17
SMCO4-206ENST00000596676 BAZ1AQ9NRL2 1556 aaPredicted RBP28.57■■■□□ 2.16
SMCO4-206ENST00000596676 RSF1Q96T23 1441 aaPredicted RBP28.37■■■□□ 2.13
SMCO4-206ENST00000596676 ATAD2BQ9ULI0 1458 aa28.35■■■□□ 2.13
SMCO4-206ENST00000596676 WIZO95785 1651 aa28.3■■■□□ 2.12
SMCO4-206ENST00000596676 SMARCA2P51531 1590 aa28.25■■■□□ 2.11
SMCO4-206ENST00000596676 PEG3Q9GZU2 1588 aa28.24■■■□□ 2.11
SMCO4-206ENST00000596676 NCAPD3P42695 1498 aa28.23■■■□□ 2.11
SMCO4-206ENST00000596676 BAZ1BQ9UIG0 1483 aaKnown RBP28.12■■■□□ 2.09
SMCO4-206ENST00000596676 HMGXB3Q12766 1538 aa28.08■■■□□ 2.09
SMCO4-206ENST00000596676 SUPT5HO00267 1087 aaKnown RBP28.07■■■□□ 2.08
SMCO4-206ENST00000596676 TOP2AP11388 1531 aaKnown RBP27.92■■■□□ 2.06
SMCO4-206ENST00000596676 CCDC88BA6NC98 1476 aa27.66■■■□□ 2.02
SMCO4-206ENST00000596676 NESP48681 1621 aa27.59■■■□□ 2.01
SMCO4-206ENST00000596676 CADPSQ9ULU8 1353 aa27.47■■□□□ 1.99
SMCO4-206ENST00000596676 LAMC3Q9Y6N6 1575 aa27.39■■□□□ 1.97
SMCO4-206ENST00000596676 CFTRP13569 1480 aa27.37■■□□□ 1.97
SMCO4-206ENST00000596676 PDS5BQ9NTI5 1447 aa27.21■■□□□ 1.95
SMCO4-206ENST00000596676 ERCC6Q03468 1493 aa27.2■■□□□ 1.95
SMCO4-206ENST00000596676 KIF21AQ7Z4S6 1674 aa27.2■■□□□ 1.94
SMCO4-206ENST00000596676 FANCD2Q9BXW9 1451 aa27.17■■□□□ 1.94
SMCO4-206ENST00000596676 PRDM2Q13029 1718 aa27.14■■□□□ 1.94
SMCO4-206ENST00000596676 CEP164Q9UPV0 1460 aa27.06■■□□□ 1.92
SMCO4-206ENST00000596676 THOC2Q8NI27 1593 aaKnown RBP26.97■■□□□ 1.91
SMCO4-206ENST00000596676 MRC2Q9UBG0 1479 aa26.93■■□□□ 1.9
SMCO4-206ENST00000596676 URB2Q14146 1524 aaKnown RBP26.91■■□□□ 1.9
SMCO4-206ENST00000596676 ABCC8Q09428 1581 aa26.83■■□□□ 1.89
SMCO4-206ENST00000596676 WDR62O43379 1518 aa26.82■■□□□ 1.88
SMCO4-206ENST00000596676 TOPBP1Q92547 1522 aa26.78■■□□□ 1.88
SMCO4-206ENST00000596676 CUX1P39880 1505 aa26.76■■□□□ 1.87
SMCO4-206ENST00000596676 DNMBPQ6XZF7 1577 aa26.74■■□□□ 1.87
SMCO4-206ENST00000596676 WRNQ14191 1432 aaPredicted RBP eCLIP26.7■■□□□ 1.86
SMCO4-206ENST00000596676 CUX2O14529 1486 aa26.69■■□□□ 1.86
SMCO4-206ENST00000596676 SYNJ1O43426 1573 aa26.67■■□□□ 1.86
SMCO4-206ENST00000596676 FGD5Q6ZNL6 1462 aa26.59■■□□□ 1.85
SMCO4-206ENST00000596676 POLA1P09884 1462 aaPredicted RBP26.58■■□□□ 1.85
SMCO4-206ENST00000596676 TOP2BQ02880 1626 aa26.57■■□□□ 1.84
SMCO4-206ENST00000596676 BIVM-ERCC5R4GMW8 1640 aa26.56■■□□□ 1.84
SMCO4-206ENST00000596676 RAD54L2Q9Y4B4 1467 aa26.55■■□□□ 1.84
SMCO4-206ENST00000596676 SOGA1O94964 1423 aa26.49■■□□□ 1.83
SMCO4-206ENST00000596676 IFT140Q96RY7 1462 aa26.46■■□□□ 1.83
SMCO4-206ENST00000596676 TARBP1Q13395 1621 aaKnown RBP26.46■■□□□ 1.83
SMCO4-206ENST00000596676 ZNF608Q9ULD9 1512 aaPredicted RBP26.43■■□□□ 1.82
SMCO4-206ENST00000596676 CHIC1Q5VXU3 224 aa26.4■■□□□ 1.82
SMCO4-206ENST00000596676 TRIM41Q8WV44 630 aa26.39■■□□□ 1.82
SMCO4-206ENST00000596676 TDRD9Q8NDG6 1382 aaKnown RBP26.35■■□□□ 1.81
SMCO4-206ENST00000596676 AQRO60306 1485 aaKnown RBP eCLIP26.33■■□□□ 1.81
SMCO4-206ENST00000596676 WDR97A6NE52 1622 aa26.31■■□□□ 1.8
SMCO4-206ENST00000596676 ABCA10Q8WWZ4 1543 aa26.29■■□□□ 1.8
SMCO4-206ENST00000596676 EIF4G3O43432 1585 aaKnown RBP26.26■■□□□ 1.79
SMCO4-206ENST00000596676 ABCA5Q8WWZ7 1642 aa26.17■■□□□ 1.78
SMCO4-206ENST00000596676 GAPVD1Q14C86 1478 aa26.17■■□□□ 1.78
SMCO4-206ENST00000596676 RUSC2Q8N2Y8 1516 aa26.15■■□□□ 1.78
SMCO4-206ENST00000596676 PBRM1Q86U86 1689 aa26.09■■□□□ 1.77
SMCO4-206ENST00000596676 GRIN2BQ13224 1484 aa26.08■■□□□ 1.77
SMCO4-206ENST00000596676 KIF27Q86VH2 1401 aa26.07■■□□□ 1.76
SMCO4-206ENST00000596676 SNAPC4Q5SXM2 1469 aa26.05■■□□□ 1.76
SMCO4-206ENST00000596676 IGF1RP08069 1367 aa26■■□□□ 1.75
SMCO4-206ENST00000596676 FAM9AQ8IZU1 332 aaPredicted RBP25.98■■□□□ 1.75
SMCO4-206ENST00000596676 ERICH3Q5RHP9 1530 aa25.95■■□□□ 1.74
SMCO4-206ENST00000596676 FBLN2P98095 1184 aa25.95■■□□□ 1.74
SMCO4-206ENST00000596676 MAGI1Q96QZ7 1491 aaPredicted RBP25.93■■□□□ 1.74
SMCO4-206ENST00000596676 ADAMTS12P58397 1594 aa25.89■■□□□ 1.73
SMCO4-206ENST00000596676 CHD1O14646 1710 aa25.88■■□□□ 1.73
SMCO4-206ENST00000596676 CHMP7Q8WUX9 453 aaPredicted RBP25.88■■□□□ 1.73
SMCO4-206ENST00000596676 SYNJ2O15056 1496 aa25.86■■□□□ 1.73
SMCO4-206ENST00000596676 FHAD1B1AJZ9 1412 aa25.86■■□□□ 1.73
SMCO4-206ENST00000596676 CSRNP3Q8WYN3 585 aa25.83■■□□□ 1.73
SMCO4-206ENST00000596676 CARMIL1Q5VZK9 1371 aa25.82■■□□□ 1.72
SMCO4-206ENST00000596676 CUL7Q14999 1698 aa25.78■■□□□ 1.72
SMCO4-206ENST00000596676 EEA1Q15075 1411 aa25.77■■□□□ 1.72
SMCO4-206ENST00000596676 GRIN2AQ12879 1464 aa25.77■■□□□ 1.72
SMCO4-206ENST00000596676 OSCARQ8IYS5 282 aa25.75■■□□□ 1.71
SMCO4-206ENST00000596676 PRXQ9BXM0 1461 aa25.71■■□□□ 1.71
SMCO4-206ENST00000596676 EHMT2Q96KQ7 1210 aa25.7■■□□□ 1.7
SMCO4-206ENST00000596676 RAPGEF2Q9Y4G8 1499 aa25.68■■□□□ 1.7
SMCO4-206ENST00000596676 CEP170Q5SW79 1584 aa25.67■■□□□ 1.7
SMCO4-206ENST00000596676 NUP160Q12769 1436 aa25.63■■□□□ 1.69
SMCO4-206ENST00000596676 CLASP1Q7Z460 1538 aa25.58■■□□□ 1.68
SMCO4-206ENST00000596676 KIF21BO75037 1637 aa25.54■■□□□ 1.68
SMCO4-206ENST00000596676 DNAJC5Q9H3Z4 198 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms