RNA–Protein interactions for RNA: ENST00000624204.3

PMS1-221, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 2 BASIC

Gene PMS1, Length 3,417 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-221ENST00000624204 NISCHQ9Y2I1 1504 aa28.1■■■□□ 2.09
PMS1-221ENST00000624204 HRCP23327 699 aa25.63■■□□□ 1.69
PMS1-221ENST00000624204 SUPT5HO00267 1087 aaKnown RBP25.56■■□□□ 1.68
PMS1-221ENST00000624204 SHROOM4Q9ULL8 1493 aa25.55■■□□□ 1.68
PMS1-221ENST00000624204 PPARGC1BQ86YN6 1023 aaKnown RBP25.44■■□□□ 1.66
PMS1-221ENST00000624204 PCGF6Q9BYE7 350 aa25.35■■□□□ 1.65
PMS1-221ENST00000624204 MYO15BQ96JP2 1530 aa24.86■■□□□ 1.57
PMS1-221ENST00000624204 CHIC1Q5VXU3 224 aa24.78■■□□□ 1.56
PMS1-221ENST00000624204 PELP1Q8IZL8 1130 aaKnown RBP24.76■■□□□ 1.55
PMS1-221ENST00000624204 DCAF8L2P0C7V8 631 aa24.47■■□□□ 1.51
PMS1-221ENST00000624204 LOC105371045A0A1W2PR82 267 aa24.44■■□□□ 1.5
PMS1-221ENST00000624204 EHMT2Q96KQ7 1210 aa24.34■■□□□ 1.49
PMS1-221ENST00000624204 SCAF1Q9H7N4 1312 aaKnown RBP24.32■■□□□ 1.48
PMS1-221ENST00000624204 TRIM26Q12899 539 aaPredicted RBP24.27■■□□□ 1.48
PMS1-221ENST00000624204 DCAF1Q9Y4B6 1507 aa24.25■■□□□ 1.47
PMS1-221ENST00000624204 ZEB1P37275 1124 aaPredicted RBP24.06■■□□□ 1.44
PMS1-221ENST00000624204 CCDC180Q9P1Z9 1646 aa23.92■■□□□ 1.42
PMS1-221ENST00000624204 FAM9AQ8IZU1 332 aaPredicted RBP23.89■■□□□ 1.41
PMS1-221ENST00000624204 ZCCHC6Q5VYS8 1495 aaKnown RBP23.88■■□□□ 1.41
PMS1-221ENST00000624204 MYT1Q01538 1121 aa23.78■■□□□ 1.4
PMS1-221ENST00000624204 ACIN1Q9UKV3 1341 aaKnown RBP23.7■■□□□ 1.38
PMS1-221ENST00000624204 NEUROD1Q13562 356 aa23.68■■□□□ 1.38
PMS1-221ENST00000624204 TTBK1Q5TCY1 1321 aaPredicted RBP23.65■■□□□ 1.38
PMS1-221ENST00000624204 GTF3C3Q9Y5Q9 886 aa23.61■■□□□ 1.37
PMS1-221ENST00000624204 YTHDC1Q96MU7 727 aaKnown RBP23.52■■□□□ 1.36
PMS1-221ENST00000624204 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.48■■□□□ 1.35
PMS1-221ENST00000624204 CENPBP07199 599 aaPredicted RBP23.47■■□□□ 1.35
PMS1-221ENST00000624204 CCER1Q8TC90 406 aaPredicted RBP23.38■■□□□ 1.33
PMS1-221ENST00000624204 TRIM41Q8WV44 630 aa23.37■■□□□ 1.33
PMS1-221ENST00000624204 DIEXFQ68CQ4 756 aaKnown RBP23.34■■□□□ 1.33
PMS1-221ENST00000624204 ZNF316A6NFI3 1004 aaPredicted RBP22.81■■□□□ 1.24
PMS1-221ENST00000624204 RSF1Q96T23 1441 aaPredicted RBP22.75■■□□□ 1.23
PMS1-221ENST00000624204 MIER1Q8N108 512 aa22.72■■□□□ 1.23
PMS1-221ENST00000624204 ABCC9O60706 1549 aa22.69■■□□□ 1.22
PMS1-221ENST00000624204 RB1CC1Q8TDY2 1594 aa22.67■■□□□ 1.22
PMS1-221ENST00000624204 HNRNPUL2Q1KMD3 747 aaKnown RBP22.54■■□□□ 1.2
PMS1-221ENST00000624204 RANGAP1P46060 587 aaPredicted RBP22.47■■□□□ 1.19
PMS1-221ENST00000624204 BCANQ96GW7 911 aa22.45■■□□□ 1.18
PMS1-221ENST00000624204 BCL11AQ9H165 835 aa22.4■■□□□ 1.18
PMS1-221ENST00000624204 SCRIBQ14160 1630 aa22.38■■□□□ 1.17
PMS1-221ENST00000624204 SUPT16HQ9Y5B9 1047 aaKnown RBP22.37■■□□□ 1.17
PMS1-221ENST00000624204 ANP32EQ9BTT0 268 aa22.36■■□□□ 1.17
PMS1-221ENST00000624204 UBTFP17480 764 aaKnown RBP22.28■■□□□ 1.16
PMS1-221ENST00000624204 TSHZ2Q9NRE2 1034 aa22.28■■□□□ 1.16
PMS1-221ENST00000624204 CEP162Q5TB80 1403 aa22.27■■□□□ 1.16
PMS1-221ENST00000624204 WRNQ14191 1432 aaPredicted RBP eCLIP22.23■■□□□ 1.15
PMS1-221ENST00000624204 CSRNP3Q8WYN3 585 aa22.18■■□□□ 1.14
PMS1-221ENST00000624204 CLSPNQ9HAW4 1339 aa22.16■■□□□ 1.14
PMS1-221ENST00000624204 CECR2Q9BXF3 1484 aa22.13■■□□□ 1.13
PMS1-221ENST00000624204 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
PMS1-221ENST00000624204 TNIKQ9UKE5 1360 aa22.04■■□□□ 1.12
PMS1-221ENST00000624204 CCDC88BA6NC98 1476 aa22.01■■□□□ 1.11
PMS1-221ENST00000624204 SOGA1O94964 1423 aa21.99■■□□□ 1.11
PMS1-221ENST00000624204 ITGAEP38570 1179 aa21.97■■□□□ 1.11
PMS1-221ENST00000624204 ABCC8Q09428 1581 aa21.97■■□□□ 1.11
PMS1-221ENST00000624204 WIZO95785 1651 aa21.96■■□□□ 1.11
PMS1-221ENST00000624204 APLP2Q06481 763 aa21.94■■□□□ 1.1
PMS1-221ENST00000624204 KCNH8Q96L42 1107 aa21.94■■□□□ 1.1
PMS1-221ENST00000624204 FKBP8Q14318 412 aa21.9■■□□□ 1.1
PMS1-221ENST00000624204 RUSC2Q8N2Y8 1516 aa21.83■■□□□ 1.09
PMS1-221ENST00000624204 RBM19Q9Y4C8 960 aaKnown RBP21.79■■□□□ 1.08
PMS1-221ENST00000624204 GOLGA3Q08378 1498 aa21.76■■□□□ 1.07
PMS1-221ENST00000624204 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
PMS1-221ENST00000624204 NEFLP07196 543 aa21.74■■□□□ 1.07
PMS1-221ENST00000624204 ERICH6Q7L0X2 663 aa21.71■■□□□ 1.07
PMS1-221ENST00000624204 TRIM52Q96A61 297 aa21.7■■□□□ 1.06
PMS1-221ENST00000624204 HIRIP3Q9BW71 556 aaPredicted RBP21.7■■□□□ 1.06
PMS1-221ENST00000624204 EEA1Q15075 1411 aa21.69■■□□□ 1.06
PMS1-221ENST00000624204 BAZ1AQ9NRL2 1556 aaPredicted RBP21.69■■□□□ 1.06
PMS1-221ENST00000624204 CLIP1P30622 1438 aa21.68■■□□□ 1.06
PMS1-221ENST00000624204 DHX57Q6P158 1386 aaKnown RBP21.68■■□□□ 1.06
PMS1-221ENST00000624204 IRX6P78412 446 aaPredicted RBP21.65■■□□□ 1.06
PMS1-221ENST00000624204 DDX10Q13206 875 aaKnown RBP21.59■■□□□ 1.05
PMS1-221ENST00000624204 VPS8Q8N3P4 1428 aa21.59■■□□□ 1.05
PMS1-221ENST00000624204 MSH5O43196 834 aa21.55■■□□□ 1.04
PMS1-221ENST00000624204 CEP164Q9UPV0 1460 aa21.51■■□□□ 1.03
PMS1-221ENST00000624204 NACADO15069 1562 aa21.47■■□□□ 1.03
PMS1-221ENST00000624204 TOP2AP11388 1531 aaKnown RBP21.44■■□□□ 1.02
PMS1-221ENST00000624204 PRKCSHP14314 528 aaPredicted RBP21.41■■□□□ 1.02
PMS1-221ENST00000624204 SMARCA2P51531 1590 aa21.41■■□□□ 1.02
PMS1-221ENST00000624204 KANK4Q5T7N3 995 aaPredicted RBP21.4■■□□□ 1.02
PMS1-221ENST00000624204 NBR1Q14596 966 aa21.38■■□□□ 1.01
PMS1-221ENST00000624204 CNGB1Q14028 1251 aaPredicted RBP21.37■■□□□ 1.01
PMS1-221ENST00000624204 CDK11AQ9UQ88 783 aaPredicted RBP21.36■■□□□ 1.01
PMS1-221ENST00000624204 RAPGEF2Q9Y4G8 1499 aa21.34■■□□□ 1.01
PMS1-221ENST00000624204 ANP32CO43423 234 aa21.32■■□□□ 1
PMS1-221ENST00000624204 KIF21BO75037 1637 aa21.31■■□□□ 1
PMS1-221ENST00000624204 FANCIQ9NVI1 1328 aa21.29■■□□□ 1
PMS1-221ENST00000624204 DEKP35659 375 aaKnown RBP21.27■■□□□ 1
PMS1-221ENST00000624204 ATP1B4Q9UN42 357 aaPredicted RBP21.27■■□□□ 1
PMS1-221ENST00000624204 SIN3AQ96ST3 1273 aa21.26■□□□□ 0.99
PMS1-221ENST00000624204 SENP3-EIF4A1A0A087X0R7 540 aa21.25■□□□□ 0.99
PMS1-221ENST00000624204 PPP1R15AO75807 674 aaPredicted RBP21.21■□□□□ 0.99
PMS1-221ENST00000624204 BAZ1BQ9UIG0 1483 aaKnown RBP21.21■□□□□ 0.99
PMS1-221ENST00000624204 RTN4Q9NQC3 1192 aaKnown RBP21.2■□□□□ 0.98
PMS1-221ENST00000624204 CCNB3Q8WWL7 1395 aa21.19■□□□□ 0.98
PMS1-221ENST00000624204 RAB3GAP2Q9H2M9 1393 aa21.18■□□□□ 0.98
PMS1-221ENST00000624204 CCER2I3L3R5 266 aa21.18■□□□□ 0.98
PMS1-221ENST00000624204 HNRNPUQ00839 825 aaKnown RBP eCLIP21.18■□□□□ 0.98
PMS1-221ENST00000624204 SMARCA4P51532 1647 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms