RNA–Protein interactions for RNA: ENST00000421670.3

DDX55-203, Transcript of DEAD-box helicase 55, humanhuman

TSL 1 (best) BASIC

Gene DDX55, Length 1,574 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-203ENST00000421670 NISCHQ9Y2I1 1504 aa37.31■■■■□ 3.56
DDX55-203ENST00000421670 CCDC180Q9P1Z9 1646 aa33■■■□□ 2.87
DDX55-203ENST00000421670 ABCC9O60706 1549 aa31.75■■■□□ 2.67
DDX55-203ENST00000421670 ZCCHC6Q5VYS8 1495 aaKnown RBP31.22■■■□□ 2.59
DDX55-203ENST00000421670 DCAF8L2P0C7V8 631 aa30.92■■■□□ 2.54
DDX55-203ENST00000421670 DCAF1Q9Y4B6 1507 aa30.86■■■□□ 2.53
DDX55-203ENST00000421670 NACADO15069 1562 aa30.82■■■□□ 2.52
DDX55-203ENST00000421670 RB1CC1Q8TDY2 1594 aa30.75■■■□□ 2.51
DDX55-203ENST00000421670 MYO15BQ96JP2 1530 aa30.75■■■□□ 2.51
DDX55-203ENST00000421670 UNC13AQ9UPW8 1703 aa30.24■■■□□ 2.43
DDX55-203ENST00000421670 SCRIBQ14160 1630 aa30.2■■■□□ 2.43
DDX55-203ENST00000421670 SHROOM4Q9ULL8 1493 aa29.86■■■□□ 2.37
DDX55-203ENST00000421670 BICRAQ9NZM4 1560 aa29.85■■■□□ 2.37
DDX55-203ENST00000421670 PABPN1Q86U42 306 aaKnown RBP eCLIP29.71■■■□□ 2.35
DDX55-203ENST00000421670 CECR2Q9BXF3 1484 aa29.03■■■□□ 2.24
DDX55-203ENST00000421670 EIF4G1Q04637 1599 aaKnown RBP29■■■□□ 2.23
DDX55-203ENST00000421670 SMARCA4P51532 1647 aa28.9■■■□□ 2.22
DDX55-203ENST00000421670 BAZ1AQ9NRL2 1556 aaPredicted RBP28.89■■■□□ 2.21
DDX55-203ENST00000421670 MROH2BQ7Z745 1585 aa28.8■■■□□ 2.2
DDX55-203ENST00000421670 CC2D2AQ9P2K1 1620 aa28.77■■■□□ 2.2
DDX55-203ENST00000421670 RSF1Q96T23 1441 aaPredicted RBP28.61■■■□□ 2.17
DDX55-203ENST00000421670 DNAJC5BQ9UF47 199 aa28.58■■■□□ 2.17
DDX55-203ENST00000421670 WIZO95785 1651 aa28.58■■■□□ 2.17
DDX55-203ENST00000421670 PEG3Q9GZU2 1588 aa28.56■■■□□ 2.16
DDX55-203ENST00000421670 SMARCA2P51531 1590 aa28.53■■■□□ 2.16
DDX55-203ENST00000421670 ATAD2BQ9ULI0 1458 aa28.52■■■□□ 2.16
DDX55-203ENST00000421670 NCAPD3P42695 1498 aa28.39■■■□□ 2.14
DDX55-203ENST00000421670 HMGXB3Q12766 1538 aa28.37■■■□□ 2.13
DDX55-203ENST00000421670 BAZ1BQ9UIG0 1483 aaKnown RBP28.35■■■□□ 2.13
DDX55-203ENST00000421670 SUPT5HO00267 1087 aaKnown RBP28.3■■■□□ 2.12
DDX55-203ENST00000421670 TOP2AP11388 1531 aaKnown RBP28.24■■■□□ 2.11
DDX55-203ENST00000421670 CCDC88BA6NC98 1476 aa27.88■■■□□ 2.05
DDX55-203ENST00000421670 NESP48681 1621 aa27.66■■■□□ 2.02
DDX55-203ENST00000421670 LAMC3Q9Y6N6 1575 aa27.63■■■□□ 2.01
DDX55-203ENST00000421670 PRDM2Q13029 1718 aa27.59■■■□□ 2.01
DDX55-203ENST00000421670 CADPSQ9ULU8 1353 aa27.59■■■□□ 2.01
DDX55-203ENST00000421670 CFTRP13569 1480 aa27.57■■■□□ 2
DDX55-203ENST00000421670 KIF21AQ7Z4S6 1674 aa27.44■■□□□ 1.98
DDX55-203ENST00000421670 PDS5BQ9NTI5 1447 aa27.35■■□□□ 1.97
DDX55-203ENST00000421670 FANCD2Q9BXW9 1451 aa27.33■■□□□ 1.97
DDX55-203ENST00000421670 ERCC6Q03468 1493 aa27.3■■□□□ 1.96
DDX55-203ENST00000421670 CEP164Q9UPV0 1460 aa27.26■■□□□ 1.95
DDX55-203ENST00000421670 THOC2Q8NI27 1593 aaKnown RBP27.15■■□□□ 1.94
DDX55-203ENST00000421670 ABCC8Q09428 1581 aa27.12■■□□□ 1.93
DDX55-203ENST00000421670 MRC2Q9UBG0 1479 aa27.09■■□□□ 1.93
DDX55-203ENST00000421670 URB2Q14146 1524 aaKnown RBP27.05■■□□□ 1.92
DDX55-203ENST00000421670 WDR62O43379 1518 aa27.01■■□□□ 1.91
DDX55-203ENST00000421670 DNMBPQ6XZF7 1577 aa27■■□□□ 1.91
DDX55-203ENST00000421670 CUX1P39880 1505 aa26.99■■□□□ 1.91
DDX55-203ENST00000421670 TOPBP1Q92547 1522 aa26.97■■□□□ 1.91
DDX55-203ENST00000421670 SYNJ1O43426 1573 aa26.97■■□□□ 1.91
DDX55-203ENST00000421670 WRNQ14191 1432 aaPredicted RBP eCLIP26.97■■□□□ 1.91
DDX55-203ENST00000421670 BIVM-ERCC5R4GMW8 1640 aa26.93■■□□□ 1.9
DDX55-203ENST00000421670 TOP2BQ02880 1626 aa26.91■■□□□ 1.9
DDX55-203ENST00000421670 FGD5Q6ZNL6 1462 aa26.8■■□□□ 1.88
DDX55-203ENST00000421670 POLA1P09884 1462 aaPredicted RBP26.78■■□□□ 1.88
DDX55-203ENST00000421670 CUX2O14529 1486 aa26.77■■□□□ 1.88
DDX55-203ENST00000421670 CHIC1Q5VXU3 224 aa26.69■■□□□ 1.86
DDX55-203ENST00000421670 TARBP1Q13395 1621 aaKnown RBP26.68■■□□□ 1.86
DDX55-203ENST00000421670 RAD54L2Q9Y4B4 1467 aa26.67■■□□□ 1.86
DDX55-203ENST00000421670 TRIM41Q8WV44 630 aa26.66■■□□□ 1.86
DDX55-203ENST00000421670 WDR97A6NE52 1622 aa26.65■■□□□ 1.86
DDX55-203ENST00000421670 SOGA1O94964 1423 aa26.63■■□□□ 1.85
DDX55-203ENST00000421670 IFT140Q96RY7 1462 aa26.62■■□□□ 1.85
DDX55-203ENST00000421670 ABCA10Q8WWZ4 1543 aa26.53■■□□□ 1.84
DDX55-203ENST00000421670 ZNF608Q9ULD9 1512 aaPredicted RBP26.52■■□□□ 1.84
DDX55-203ENST00000421670 EIF4G3O43432 1585 aaKnown RBP26.5■■□□□ 1.83
DDX55-203ENST00000421670 ABCA5Q8WWZ7 1642 aa26.46■■□□□ 1.83
DDX55-203ENST00000421670 TDRD9Q8NDG6 1382 aaKnown RBP26.43■■□□□ 1.82
DDX55-203ENST00000421670 PBRM1Q86U86 1689 aa26.41■■□□□ 1.82
DDX55-203ENST00000421670 AQRO60306 1485 aaKnown RBP eCLIP26.41■■□□□ 1.827e-7■□□□□ 9
DDX55-203ENST00000421670 GAPVD1Q14C86 1478 aa26.36■■□□□ 1.81
DDX55-203ENST00000421670 RUSC2Q8N2Y8 1516 aa26.34■■□□□ 1.81
DDX55-203ENST00000421670 KIF27Q86VH2 1401 aa26.34■■□□□ 1.81
DDX55-203ENST00000421670 GRIN2BQ13224 1484 aa26.26■■□□□ 1.79
DDX55-203ENST00000421670 ERICH3Q5RHP9 1530 aa26.23■■□□□ 1.79
DDX55-203ENST00000421670 SNAPC4Q5SXM2 1469 aa26.21■■□□□ 1.79
DDX55-203ENST00000421670 ADAMTS12P58397 1594 aa26.17■■□□□ 1.78
DDX55-203ENST00000421670 EEA1Q15075 1411 aa26.16■■□□□ 1.78
DDX55-203ENST00000421670 CUL7Q14999 1698 aa26.16■■□□□ 1.78
DDX55-203ENST00000421670 FAM9AQ8IZU1 332 aaPredicted RBP26.16■■□□□ 1.78
DDX55-203ENST00000421670 MAGI1Q96QZ7 1491 aaPredicted RBP26.14■■□□□ 1.78
DDX55-203ENST00000421670 IGF1RP08069 1367 aa26.14■■□□□ 1.77
DDX55-203ENST00000421670 CHD1O14646 1710 aa26.11■■□□□ 1.77
DDX55-203ENST00000421670 FHAD1B1AJZ9 1412 aa26.04■■□□□ 1.76
DDX55-203ENST00000421670 SYNJ2O15056 1496 aa26.04■■□□□ 1.76
DDX55-203ENST00000421670 CSRNP3Q8WYN3 585 aa26.03■■□□□ 1.76
DDX55-203ENST00000421670 CARMIL1Q5VZK9 1371 aa26■■□□□ 1.75
DDX55-203ENST00000421670 PRXQ9BXM0 1461 aa25.98■■□□□ 1.75
DDX55-203ENST00000421670 FBLN2P98095 1184 aa25.96■■□□□ 1.75
DDX55-203ENST00000421670 GRIN2AQ12879 1464 aa25.96■■□□□ 1.75
DDX55-203ENST00000421670 KIF21BO75037 1637 aa25.96■■□□□ 1.75
DDX55-203ENST00000421670 RAPGEF2Q9Y4G8 1499 aa25.94■■□□□ 1.74
DDX55-203ENST00000421670 CHMP7Q8WUX9 453 aaPredicted RBP25.93■■□□□ 1.74
DDX55-203ENST00000421670 CEP170Q5SW79 1584 aa25.87■■□□□ 1.73
DDX55-203ENST00000421670 EHMT2Q96KQ7 1210 aa25.83■■□□□ 1.73
DDX55-203ENST00000421670 CTTNBP2Q8WZ74 1663 aa25.83■■□□□ 1.72
DDX55-203ENST00000421670 GOLGA3Q08378 1498 aa25.8■■□□□ 1.72
DDX55-203ENST00000421670 NUP160Q12769 1436 aa25.79■■□□□ 1.72
DDX55-203ENST00000421670 CLASP1Q7Z460 1538 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms