Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CCDC28BQ9BUN5 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 MCCD1P2-201ENST00000423228 335 ntBASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 KRT18P43-201ENST00000469825 1281 ntBASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 AC022447.6-201ENST00000515522 438 ntBASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 SAMD11P1-201ENST00000571429 661 ntBASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 AC003101.2-201ENST00000612557 442 ntBASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 AC007967.4-201ENST00000614700 386 ntBASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 AC015818.8-201ENST00000587907 1519 ntBASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CCDC28BQ9BUN5 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 AC023274.1-201ENST00000418278 595 ntBASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 AL354702.1-201ENST00000442006 1960 ntBASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 AC018665.1-201ENST00000622927 1362 ntBASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 PTENP1-202ENST00000532280 3996 ntBASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CCDC28BQ9BUN5 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC28BQ9BUN5 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms