RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 NISCHQ9Y2I1 1504 aa32.45■■■□□ 2.79
ECHDC1-220ENST00000528402 CCDC180Q9P1Z9 1646 aa28.17■■■□□ 2.1
ECHDC1-220ENST00000528402 ZCCHC6Q5VYS8 1495 aaKnown RBP27.32■■□□□ 1.96
ECHDC1-220ENST00000528402 DCAF1Q9Y4B6 1507 aa26.94■■□□□ 1.9
ECHDC1-220ENST00000528402 DCAF8L2P0C7V8 631 aa26.61■■□□□ 1.85
ECHDC1-220ENST00000528402 SHROOM4Q9ULL8 1493 aa26.57■■□□□ 1.84
ECHDC1-220ENST00000528402 MYO15BQ96JP2 1530 aa26.5■■□□□ 1.83
ECHDC1-220ENST00000528402 NACADO15069 1562 aa26.17■■□□□ 1.78
ECHDC1-220ENST00000528402 ABCC9O60706 1549 aa26.14■■□□□ 1.77
ECHDC1-220ENST00000528402 SUPT5HO00267 1087 aaKnown RBP25.84■■□□□ 1.73
ECHDC1-220ENST00000528402 RB1CC1Q8TDY2 1594 aa25.82■■□□□ 1.72
ECHDC1-220ENST00000528402 SCRIBQ14160 1630 aa25.81■■□□□ 1.72
ECHDC1-220ENST00000528402 RSF1Q96T23 1441 aaPredicted RBP25.3■■□□□ 1.64
ECHDC1-220ENST00000528402 UNC13AQ9UPW8 1703 aa25.22■■□□□ 1.63
ECHDC1-220ENST00000528402 CECR2Q9BXF3 1484 aa25.09■■□□□ 1.61
ECHDC1-220ENST00000528402 BAZ1AQ9NRL2 1556 aaPredicted RBP25.06■■□□□ 1.6
ECHDC1-220ENST00000528402 MROH2BQ7Z745 1585 aa25.02■■□□□ 1.6
ECHDC1-220ENST00000528402 CHIC1Q5VXU3 224 aa25.01■■□□□ 1.59
ECHDC1-220ENST00000528402 BICRAQ9NZM4 1560 aa24.94■■□□□ 1.58
ECHDC1-220ENST00000528402 SMARCA4P51532 1647 aa24.84■■□□□ 1.57
ECHDC1-220ENST00000528402 WIZO95785 1651 aa24.82■■□□□ 1.56
ECHDC1-220ENST00000528402 PABPN1Q86U42 306 aaKnown RBP eCLIP24.72■■□□□ 1.55
ECHDC1-220ENST00000528402 TOP2AP11388 1531 aaKnown RBP24.65■■□□□ 1.54
ECHDC1-220ENST00000528402 PEG3Q9GZU2 1588 aa24.58■■□□□ 1.53
ECHDC1-220ENST00000528402 SMARCA2P51531 1590 aa24.41■■□□□ 1.5
ECHDC1-220ENST00000528402 CCDC88BA6NC98 1476 aa24.38■■□□□ 1.49
ECHDC1-220ENST00000528402 TRIM41Q8WV44 630 aa24.37■■□□□ 1.49
ECHDC1-220ENST00000528402 ATAD2BQ9ULI0 1458 aa24.35■■□□□ 1.49
ECHDC1-220ENST00000528402 EIF4G1Q04637 1599 aaKnown RBP24.3■■□□□ 1.48
ECHDC1-220ENST00000528402 BAZ1BQ9UIG0 1483 aaKnown RBP24.24■■□□□ 1.47
ECHDC1-220ENST00000528402 NCAPD3P42695 1498 aa24.13■■□□□ 1.45
ECHDC1-220ENST00000528402 HMGXB3Q12766 1538 aa24.12■■□□□ 1.45
ECHDC1-220ENST00000528402 LOC105371045A0A1W2PR82 267 aa23.98■■□□□ 1.43
ECHDC1-220ENST00000528402 ABCC8Q09428 1581 aa23.9■■□□□ 1.42
ECHDC1-220ENST00000528402 WRNQ14191 1432 aaPredicted RBP eCLIP23.82■■□□□ 1.4
ECHDC1-220ENST00000528402 EEA1Q15075 1411 aa23.82■■□□□ 1.4
ECHDC1-220ENST00000528402 FAM9AQ8IZU1 332 aaPredicted RBP23.8■■□□□ 1.4
ECHDC1-220ENST00000528402 CC2D2AQ9P2K1 1620 aa23.71■■□□□ 1.39
ECHDC1-220ENST00000528402 CFTRP13569 1480 aa23.67■■□□□ 1.38
ECHDC1-220ENST00000528402 SYNJ1O43426 1573 aa23.63■■□□□ 1.37
ECHDC1-220ENST00000528402 PRDM2Q13029 1718 aa23.6■■□□□ 1.37
ECHDC1-220ENST00000528402 TOP2BQ02880 1626 aa23.6■■□□□ 1.37
ECHDC1-220ENST00000528402 CSRNP3Q8WYN3 585 aa23.58■■□□□ 1.36
ECHDC1-220ENST00000528402 SOGA1O94964 1423 aa23.57■■□□□ 1.36
ECHDC1-220ENST00000528402 BIVM-ERCC5R4GMW8 1640 aa23.56■■□□□ 1.36
ECHDC1-220ENST00000528402 CADPSQ9ULU8 1353 aa23.53■■□□□ 1.36
ECHDC1-220ENST00000528402 TNIKQ9UKE5 1360 aa23.44■■□□□ 1.34
ECHDC1-220ENST00000528402 RUSC2Q8N2Y8 1516 aa23.42■■□□□ 1.34
ECHDC1-220ENST00000528402 GOLGA3Q08378 1498 aa23.4■■□□□ 1.34
ECHDC1-220ENST00000528402 KIF21BO75037 1637 aa23.38■■□□□ 1.33
ECHDC1-220ENST00000528402 CEP164Q9UPV0 1460 aa23.38■■□□□ 1.33
ECHDC1-220ENST00000528402 CUX1P39880 1505 aa23.37■■□□□ 1.33
ECHDC1-220ENST00000528402 TRIM26Q12899 539 aaPredicted RBP23.36■■□□□ 1.33
ECHDC1-220ENST00000528402 EHMT2Q96KQ7 1210 aa23.34■■□□□ 1.33
ECHDC1-220ENST00000528402 PCGF6Q9BYE7 350 aa23.33■■□□□ 1.32
ECHDC1-220ENST00000528402 UBTFP17480 764 aaKnown RBP23.27■■□□□ 1.32
ECHDC1-220ENST00000528402 CEP162Q5TB80 1403 aa23.25■■□□□ 1.31
ECHDC1-220ENST00000528402 LAMC3Q9Y6N6 1575 aa23.24■■□□□ 1.31
ECHDC1-220ENST00000528402 KIF27Q86VH2 1401 aa23.23■■□□□ 1.31
ECHDC1-220ENST00000528402 FANCD2Q9BXW9 1451 aa23.22■■□□□ 1.31
ECHDC1-220ENST00000528402 ERICH3Q5RHP9 1530 aa23.18■■□□□ 1.3
ECHDC1-220ENST00000528402 PRXQ9BXM0 1461 aa23.13■■□□□ 1.29
ECHDC1-220ENST00000528402 DNMBPQ6XZF7 1577 aa23.11■■□□□ 1.29
ECHDC1-220ENST00000528402 RAPGEF2Q9Y4G8 1499 aa23.09■■□□□ 1.29
ECHDC1-220ENST00000528402 PDS5BQ9NTI5 1447 aa23.08■■□□□ 1.29
ECHDC1-220ENST00000528402 FGD5Q6ZNL6 1462 aa23.07■■□□□ 1.28
ECHDC1-220ENST00000528402 NESP48681 1621 aa23.05■■□□□ 1.28
ECHDC1-220ENST00000528402 HRCP23327 699 aa23.04■■□□□ 1.28
ECHDC1-220ENST00000528402 CLIP1P30622 1438 aa23.02■■□□□ 1.28
ECHDC1-220ENST00000528402 TOPBP1Q92547 1522 aa23.01■■□□□ 1.27
ECHDC1-220ENST00000528402 CUX2O14529 1486 aa23.01■■□□□ 1.27
ECHDC1-220ENST00000528402 IGF1RP08069 1367 aa22.95■■□□□ 1.26
ECHDC1-220ENST00000528402 ABCA10Q8WWZ4 1543 aa22.94■■□□□ 1.26
ECHDC1-220ENST00000528402 POLA1P09884 1462 aaPredicted RBP22.91■■□□□ 1.26
ECHDC1-220ENST00000528402 VPS8Q8N3P4 1428 aa22.89■■□□□ 1.25
ECHDC1-220ENST00000528402 URB2Q14146 1524 aaKnown RBP22.87■■□□□ 1.25
ECHDC1-220ENST00000528402 CARMIL1Q5VZK9 1371 aa22.87■■□□□ 1.25
ECHDC1-220ENST00000528402 DNAJC5BQ9UF47 199 aa22.83■■□□□ 1.25
ECHDC1-220ENST00000528402 KIF21AQ7Z4S6 1674 aa22.81■■□□□ 1.24
ECHDC1-220ENST00000528402 RAD54L2Q9Y4B4 1467 aa22.79■■□□□ 1.24
ECHDC1-220ENST00000528402 CUL7Q14999 1698 aa22.77■■□□□ 1.24
ECHDC1-220ENST00000528402 WDR97A6NE52 1622 aa22.77■■□□□ 1.24
ECHDC1-220ENST00000528402 APLP2Q06481 763 aa22.77■■□□□ 1.24
ECHDC1-220ENST00000528402 ZEB1P37275 1124 aaPredicted RBP22.76■■□□□ 1.23
ECHDC1-220ENST00000528402 PPARGC1BQ86YN6 1023 aaKnown RBP22.74■■□□□ 1.23
ECHDC1-220ENST00000528402 MRC2Q9UBG0 1479 aa22.7■■□□□ 1.22
ECHDC1-220ENST00000528402 ARAP1Q96P48 1450 aa22.68■■□□□ 1.22
ECHDC1-220ENST00000528402 ABCA5Q8WWZ7 1642 aa22.68■■□□□ 1.22
ECHDC1-220ENST00000528402 GAPVD1Q14C86 1478 aa22.64■■□□□ 1.21
ECHDC1-220ENST00000528402 ARHGAP35Q9NRY4 1499 aa22.63■■□□□ 1.21
ECHDC1-220ENST00000528402 TARBP1Q13395 1621 aaKnown RBP22.63■■□□□ 1.21
ECHDC1-220ENST00000528402 RANGAP1P46060 587 aaPredicted RBP22.62■■□□□ 1.21
ECHDC1-220ENST00000528402 TDRD9Q8NDG6 1382 aaKnown RBP22.56■■□□□ 1.2
ECHDC1-220ENST00000528402 WDR62O43379 1518 aa22.55■■□□□ 1.2
ECHDC1-220ENST00000528402 CTTNBP2Q8WZ74 1663 aa22.54■■□□□ 1.2
ECHDC1-220ENST00000528402 EFCAB5A4FU69 1503 aa22.52■■□□□ 1.2
ECHDC1-220ENST00000528402 IFT140Q96RY7 1462 aa22.52■■□□□ 1.2
ECHDC1-220ENST00000528402 MAP3K1Q13233 1512 aa22.52■■□□□ 1.2
ECHDC1-220ENST00000528402 FHAD1B1AJZ9 1412 aa22.51■■□□□ 1.19
ECHDC1-220ENST00000528402 PBRM1Q86U86 1689 aa22.45■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms