RNA–Protein interactions for RNA: ENST00000334490.5

C9orf47-201, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C9orf47, Length 4,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-201ENST00000334490 DCAF8L2P0C7V8 631 aa27.2■■□□□ 1.94
C9orf47-201ENST00000334490 NISCHQ9Y2I1 1504 aa26.7■■□□□ 1.86
C9orf47-201ENST00000334490 SUPT5HO00267 1087 aaKnown RBP25.43■■□□□ 1.66
C9orf47-201ENST00000334490 SHROOM4Q9ULL8 1493 aa25.27■■□□□ 1.64
C9orf47-201ENST00000334490 EHMT2Q96KQ7 1210 aa24.43■■□□□ 1.5
C9orf47-201ENST00000334490 FAM9AQ8IZU1 332 aaPredicted RBP23.95■■□□□ 1.42
C9orf47-201ENST00000334490 APLP2Q06481 763 aa23.85■■□□□ 1.41
C9orf47-201ENST00000334490 TRIM41Q8WV44 630 aa23.6■■□□□ 1.37
C9orf47-201ENST00000334490 RANGAP1P46060 587 aaPredicted RBP23.54■■□□□ 1.36
C9orf47-201ENST00000334490 TTBK1Q5TCY1 1321 aaPredicted RBP23.48■■□□□ 1.35
C9orf47-201ENST00000334490 ATP1B4Q9UN42 357 aaPredicted RBP23.31■■□□□ 1.32
C9orf47-201ENST00000334490 ABCC9O60706 1549 aa23.29■■□□□ 1.32
C9orf47-201ENST00000334490 UBTFP17480 764 aaKnown RBP23.28■■□□□ 1.32
C9orf47-201ENST00000334490 PCGF6Q9BYE7 350 aa23.09■■□□□ 1.29
C9orf47-201ENST00000334490 PABPN1Q86U42 306 aaKnown RBP eCLIP23.05■■□□□ 1.28
C9orf47-201ENST00000334490 CCER1Q8TC90 406 aaPredicted RBP22.74■■□□□ 1.23
C9orf47-201ENST00000334490 PPARGC1BQ86YN6 1023 aaKnown RBP22.7■■□□□ 1.22
C9orf47-201ENST00000334490 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.65■■□□□ 1.22
C9orf47-201ENST00000334490 HNRNPUL2Q1KMD3 747 aaKnown RBP22.65■■□□□ 1.22
C9orf47-201ENST00000334490 CHIC1Q5VXU3 224 aa22.61■■□□□ 1.21
C9orf47-201ENST00000334490 LOC105371045A0A1W2PR82 267 aa22.51■■□□□ 1.19
C9orf47-201ENST00000334490 ZEB1P37275 1124 aaPredicted RBP22.51■■□□□ 1.19
C9orf47-201ENST00000334490 PELP1Q8IZL8 1130 aaKnown RBP22.48■■□□□ 1.19
C9orf47-201ENST00000334490 MYT1LQ9UL68 1186 aa22.47■■□□□ 1.19
C9orf47-201ENST00000334490 ITGAEP38570 1179 aa22.41■■□□□ 1.18
C9orf47-201ENST00000334490 TRIM26Q12899 539 aaPredicted RBP22.26■■□□□ 1.15
C9orf47-201ENST00000334490 FBLN2P98095 1184 aa22.15■■□□□ 1.14
C9orf47-201ENST00000334490 SCRIBQ14160 1630 aa22.12■■□□□ 1.13
C9orf47-201ENST00000334490 CENPBP07199 599 aaPredicted RBP22.07■■□□□ 1.12
C9orf47-201ENST00000334490 ZCCHC6Q5VYS8 1495 aaKnown RBP22.05■■□□□ 1.12
C9orf47-201ENST00000334490 CCDC180Q9P1Z9 1646 aa21.96■■□□□ 1.11
C9orf47-201ENST00000334490 POLR3GLQ9BT43 218 aa21.94■■□□□ 1.1
C9orf47-201ENST00000334490 FAM50AQ14320 339 aaKnown RBP21.93■■□□□ 1.1
C9orf47-201ENST00000334490 YTHDC1Q96MU7 727 aaKnown RBP21.87■■□□□ 1.09
C9orf47-201ENST00000334490 CSRNP3Q8WYN3 585 aa21.8■■□□□ 1.08
C9orf47-201ENST00000334490 P3H3Q8IVL6 736 aa21.78■■□□□ 1.08
C9orf47-201ENST00000334490 TRIM52Q96A61 297 aa21.75■■□□□ 1.07
C9orf47-201ENST00000334490 NEFLP07196 543 aa21.74■■□□□ 1.07
C9orf47-201ENST00000334490 ARID3CA6NKF2 412 aa21.72■■□□□ 1.07
C9orf47-201ENST00000334490 CNGB1Q14028 1251 aaPredicted RBP21.71■■□□□ 1.07
C9orf47-201ENST00000334490 RB1CC1Q8TDY2 1594 aa21.7■■□□□ 1.06
C9orf47-201ENST00000334490 HRCP23327 699 aa21.67■■□□□ 1.06
C9orf47-201ENST00000334490 SLC4A1APQ9BWU0 796 aaKnown RBP21.61■■□□□ 1.05
C9orf47-201ENST00000334490 NEUROD1Q13562 356 aa21.53■■□□□ 1.04
C9orf47-201ENST00000334490 ERICH6Q7L0X2 663 aa21.48■■□□□ 1.03
C9orf47-201ENST00000334490 NACADO15069 1562 aa21.48■■□□□ 1.03
C9orf47-201ENST00000334490 CDK11AQ9UQ88 783 aaPredicted RBP21.48■■□□□ 1.03
C9orf47-201ENST00000334490 ZNF777Q9ULD5 760 aaPredicted RBP21.47■■□□□ 1.03
C9orf47-201ENST00000334490 ZNF326Q5BKZ1 582 aaKnown RBP21.43■■□□□ 1.02
C9orf47-201ENST00000334490 NPM1P06748 294 aaKnown RBP eCLIP21.37■■□□□ 1.01
C9orf47-201ENST00000334490 CHMP7Q8WUX9 453 aaPredicted RBP21.32■■□□□ 1
C9orf47-201ENST00000334490 RSF1Q96T23 1441 aaPredicted RBP21.3■■□□□ 1
C9orf47-201ENST00000334490 BCANQ96GW7 911 aa21.23■□□□□ 0.99
C9orf47-201ENST00000334490 BAZ1BQ9UIG0 1483 aaKnown RBP21.22■□□□□ 0.99
C9orf47-201ENST00000334490 DIEXFQ68CQ4 756 aaKnown RBP21.22■□□□□ 0.99
C9orf47-201ENST00000334490 ESF1Q9H501 851 aaKnown RBP21.19■□□□□ 0.98
C9orf47-201ENST00000334490 PLPPR3Q6T4P5 718 aa21.05■□□□□ 0.96
C9orf47-201ENST00000334490 DCAF1Q9Y4B6 1507 aa21.05■□□□□ 0.96
C9orf47-201ENST00000334490 CHGAP10645 457 aaKnown RBP21.03■□□□□ 0.96
C9orf47-201ENST00000334490 CHIC2Q9UKJ5 165 aa21.03■□□□□ 0.96
C9orf47-201ENST00000334490 WRNQ14191 1432 aaPredicted RBP eCLIP21.03■□□□□ 0.96
C9orf47-201ENST00000334490 CECR2Q9BXF3 1484 aa21.02■□□□□ 0.96
C9orf47-201ENST00000334490 STAG3Q9UJ98 1225 aa21.01■□□□□ 0.95
C9orf47-201ENST00000334490 BAZ1AQ9NRL2 1556 aaPredicted RBP21■□□□□ 0.95
C9orf47-201ENST00000334490 ANP32CO43423 234 aa21■□□□□ 0.95
C9orf47-201ENST00000334490 MTUS2Q5JR59 1369 aa21■□□□□ 0.95
C9orf47-201ENST00000334490 ERCC6Q03468 1493 aa20.98■□□□□ 0.95
C9orf47-201ENST00000334490 TSPY4P0CV99 314 aa20.98■□□□□ 0.95
C9orf47-201ENST00000334490 TSPY10P0CW01 314 aa20.98■□□□□ 0.95
C9orf47-201ENST00000334490 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.96■□□□□ 0.95
C9orf47-201ENST00000334490 CLIP1P30622 1438 aa20.95■□□□□ 0.94
C9orf47-201ENST00000334490 DAXXQ9UER7 740 aaPredicted RBP20.94■□□□□ 0.94
C9orf47-201ENST00000334490 KCNH8Q96L42 1107 aa20.93■□□□□ 0.94
C9orf47-201ENST00000334490 ZNF316A6NFI3 1004 aaPredicted RBP20.9■□□□□ 0.94
C9orf47-201ENST00000334490 EEA1Q15075 1411 aa20.89■□□□□ 0.93
C9orf47-201ENST00000334490 KIF27Q86VH2 1401 aa20.89■□□□□ 0.93
C9orf47-201ENST00000334490 PLEKHD1A6NEE1 506 aa20.87■□□□□ 0.93
C9orf47-201ENST00000334490 TONSLQ96HA7 1378 aa20.86■□□□□ 0.93
C9orf47-201ENST00000334490 CLSPNQ9HAW4 1339 aa20.84■□□□□ 0.93
C9orf47-201ENST00000334490 SLC24A1O60721 1099 aa20.81■□□□□ 0.92
C9orf47-201ENST00000334490 GOLGA3Q08378 1498 aa20.81■□□□□ 0.92
C9orf47-201ENST00000334490 NEFMP07197 916 aa20.79■□□□□ 0.92
C9orf47-201ENST00000334490 RRP7BPQ9NSQ0 103 aa20.72■□□□□ 0.91
C9orf47-201ENST00000334490 CEP162Q5TB80 1403 aa20.72■□□□□ 0.91
C9orf47-201ENST00000334490 MROH2BQ7Z745 1585 aa20.69■□□□□ 0.9
C9orf47-201ENST00000334490 KDM2AQ9Y2K7 1162 aa20.68■□□□□ 0.9
C9orf47-201ENST00000334490 CFDP1Q9UEE9 299 aaPredicted RBP20.66■□□□□ 0.9
C9orf47-201ENST00000334490 CEP164Q9UPV0 1460 aa20.66■□□□□ 0.9
C9orf47-201ENST00000334490 CUX2O14529 1486 aa20.63■□□□□ 0.89
C9orf47-201ENST00000334490 TNIKQ9UKE5 1360 aa20.61■□□□□ 0.89
C9orf47-201ENST00000334490 SMARCA2P51531 1590 aa20.61■□□□□ 0.89
C9orf47-201ENST00000334490 CANXP27824 592 aaKnown RBP20.61■□□□□ 0.89
C9orf47-201ENST00000334490 CARMIL1Q5VZK9 1371 aa20.6■□□□□ 0.89
C9orf47-201ENST00000334490 ZBTB47Q9UFB7 747 aaPredicted RBP20.6■□□□□ 0.89
C9orf47-201ENST00000334490 PDS5BQ9NTI5 1447 aa20.59■□□□□ 0.89
C9orf47-201ENST00000334490 CCDC88BA6NC98 1476 aa20.59■□□□□ 0.89
C9orf47-201ENST00000334490 MYO15BQ96JP2 1530 aa20.59■□□□□ 0.89
C9orf47-201ENST00000334490 DDX10Q13206 875 aaKnown RBP20.56■□□□□ 0.88
C9orf47-201ENST00000334490 ARID4BQ4LE39 1312 aaPredicted RBP20.56■□□□□ 0.88
C9orf47-201ENST00000334490 SENP3Q9H4L4 574 aaPredicted RBP20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms