RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 DCAF8L2P0C7V8 631 aa26.49■■□□□ 1.83
UBE3B-202ENST00000342494 SUPT5HO00267 1087 aaKnown RBP24.73■■□□□ 1.55
UBE3B-202ENST00000342494 NISCHQ9Y2I1 1504 aa24.35■■□□□ 1.49
UBE3B-202ENST00000342494 SHROOM4Q9ULL8 1493 aa24.24■■□□□ 1.47
UBE3B-202ENST00000342494 EHMT2Q96KQ7 1210 aa24.13■■□□□ 1.45
UBE3B-202ENST00000342494 APLP2Q06481 763 aa23.81■■□□□ 1.4
UBE3B-202ENST00000342494 FAM9AQ8IZU1 332 aaPredicted RBP23.72■■□□□ 1.39
UBE3B-202ENST00000342494 PELP1Q8IZL8 1130 aaKnown RBP23.46■■□□□ 1.35
UBE3B-202ENST00000342494 TTBK1Q5TCY1 1321 aaPredicted RBP23.27■■□□□ 1.32
UBE3B-202ENST00000342494 RANGAP1P46060 587 aaPredicted RBP23.19■■□□□ 1.3
UBE3B-202ENST00000342494 ATP1B4Q9UN42 357 aaPredicted RBP23.09■■□□□ 1.29
UBE3B-202ENST00000342494 TRIM41Q8WV44 630 aa22.91■■□□□ 1.26
UBE3B-202ENST00000342494 PCGF6Q9BYE7 350 aa22.9■■□□□ 1.26
UBE3B-202ENST00000342494 UBTFP17480 764 aaKnown RBP22.79■■□□□ 1.24
UBE3B-202ENST00000342494 CCER1Q8TC90 406 aaPredicted RBP22.64■■□□□ 1.22
UBE3B-202ENST00000342494 ERICH6Q7L0X2 663 aa22.49■■□□□ 1.19
UBE3B-202ENST00000342494 ZEB1P37275 1124 aaPredicted RBP22.47■■□□□ 1.19
UBE3B-202ENST00000342494 CENPBP07199 599 aaPredicted RBP22.47■■□□□ 1.19
UBE3B-202ENST00000342494 MYT1LQ9UL68 1186 aa22.44■■□□□ 1.18
UBE3B-202ENST00000342494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.35■■□□□ 1.17
UBE3B-202ENST00000342494 HNRNPUL2Q1KMD3 747 aaKnown RBP22.35■■□□□ 1.17
UBE3B-202ENST00000342494 NEFLP07196 543 aa22.24■■□□□ 1.15
UBE3B-202ENST00000342494 PPARGC1BQ86YN6 1023 aaKnown RBP22.18■■□□□ 1.14
UBE3B-202ENST00000342494 ITGAEP38570 1179 aa22.1■■□□□ 1.13
UBE3B-202ENST00000342494 YTHDC1Q96MU7 727 aaKnown RBP22.08■■□□□ 1.13
UBE3B-202ENST00000342494 POLR3GLQ9BT43 218 aa22.05■■□□□ 1.12
UBE3B-202ENST00000342494 CHIC1Q5VXU3 224 aa21.98■■□□□ 1.11
UBE3B-202ENST00000342494 SLC4A1APQ9BWU0 796 aaKnown RBP21.79■■□□□ 1.08
UBE3B-202ENST00000342494 TRIM26Q12899 539 aaPredicted RBP21.79■■□□□ 1.08
UBE3B-202ENST00000342494 CNGB1Q14028 1251 aaPredicted RBP21.77■■□□□ 1.08
UBE3B-202ENST00000342494 DAXXQ9UER7 740 aaPredicted RBP21.71■■□□□ 1.07
UBE3B-202ENST00000342494 PABPN1Q86U42 306 aaKnown RBP eCLIP21.66■■□□□ 1.06
UBE3B-202ENST00000342494 LOC105371045A0A1W2PR82 267 aa21.6■■□□□ 1.05
UBE3B-202ENST00000342494 ABCC9O60706 1549 aa21.56■■□□□ 1.04
UBE3B-202ENST00000342494 FAM50AQ14320 339 aaKnown RBP21.52■■□□□ 1.04
UBE3B-202ENST00000342494 FBLN2P98095 1184 aa21.48■■□□□ 1.03
UBE3B-202ENST00000342494 TRIM52Q96A61 297 aa21.47■■□□□ 1.03
UBE3B-202ENST00000342494 HRCP23327 699 aa21.42■■□□□ 1.02
UBE3B-202ENST00000342494 CLSPNQ9HAW4 1339 aa21.33■■□□□ 1.01
UBE3B-202ENST00000342494 ZNF326Q5BKZ1 582 aaKnown RBP21.24■□□□□ 0.99
UBE3B-202ENST00000342494 NEUROD1Q13562 356 aa21.24■□□□□ 0.99
UBE3B-202ENST00000342494 BCANQ96GW7 911 aa21.2■□□□□ 0.98
UBE3B-202ENST00000342494 ZNF316A6NFI3 1004 aaPredicted RBP21.16■□□□□ 0.98
UBE3B-202ENST00000342494 MYT1Q01538 1121 aa21.11■□□□□ 0.97
UBE3B-202ENST00000342494 SLC24A1O60721 1099 aa21.1■□□□□ 0.97
UBE3B-202ENST00000342494 ARID3CA6NKF2 412 aa21.09■□□□□ 0.97
UBE3B-202ENST00000342494 ZBTB47Q9UFB7 747 aaPredicted RBP21.07■□□□□ 0.96
UBE3B-202ENST00000342494 DIEXFQ68CQ4 756 aaKnown RBP21.04■□□□□ 0.96
UBE3B-202ENST00000342494 P3H3Q8IVL6 736 aa21.03■□□□□ 0.96
UBE3B-202ENST00000342494 ESF1Q9H501 851 aaKnown RBP20.99■□□□□ 0.95
UBE3B-202ENST00000342494 NEFMP07197 916 aa20.98■□□□□ 0.95
UBE3B-202ENST00000342494 ZNF777Q9ULD5 760 aaPredicted RBP20.97■□□□□ 0.95
UBE3B-202ENST00000342494 RTL5Q5HYW3 569 aaPredicted RBP20.97■□□□□ 0.95
UBE3B-202ENST00000342494 ANP32CO43423 234 aa20.94■□□□□ 0.94
UBE3B-202ENST00000342494 CDK11AQ9UQ88 783 aaPredicted RBP20.9■□□□□ 0.94
UBE3B-202ENST00000342494 BCL11AQ9H165 835 aa20.88■□□□□ 0.93
UBE3B-202ENST00000342494 CANXP27824 592 aaKnown RBP20.88■□□□□ 0.93
UBE3B-202ENST00000342494 NPM1P06748 294 aaKnown RBP eCLIP20.84■□□□□ 0.93
UBE3B-202ENST00000342494 PLPPR3Q6T4P5 718 aa20.83■□□□□ 0.92
UBE3B-202ENST00000342494 STAG3Q9UJ98 1225 aa20.82■□□□□ 0.92
UBE3B-202ENST00000342494 CSRNP3Q8WYN3 585 aa20.79■□□□□ 0.92
UBE3B-202ENST00000342494 CHGAP10645 457 aaKnown RBP20.77■□□□□ 0.91
UBE3B-202ENST00000342494 SCRIBQ14160 1630 aa20.55■□□□□ 0.88
UBE3B-202ENST00000342494 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.5■□□□□ 0.87
UBE3B-202ENST00000342494 TONSLQ96HA7 1378 aa20.47■□□□□ 0.87
UBE3B-202ENST00000342494 CHMP7Q8WUX9 453 aaPredicted RBP20.44■□□□□ 0.86
UBE3B-202ENST00000342494 GTF3C3Q9Y5Q9 886 aa20.41■□□□□ 0.86
UBE3B-202ENST00000342494 CHIC2Q9UKJ5 165 aa20.41■□□□□ 0.86
UBE3B-202ENST00000342494 TSPY4P0CV99 314 aa20.41■□□□□ 0.86
UBE3B-202ENST00000342494 TSPY10P0CW01 314 aa20.41■□□□□ 0.86
UBE3B-202ENST00000342494 SCAF1Q9H7N4 1312 aaKnown RBP20.4■□□□□ 0.86
UBE3B-202ENST00000342494 A0A0G2JS52 829 aa20.31■□□□□ 0.84
UBE3B-202ENST00000342494 ANP32AP39687 249 aaKnown RBP20.31■□□□□ 0.84
UBE3B-202ENST00000342494 NPM2Q86SE8 214 aaKnown RBP20.28■□□□□ 0.84
UBE3B-202ENST00000342494 HSP90AA1P07900 732 aaKnown RBP20.28■□□□□ 0.84
UBE3B-202ENST00000342494 KDM2AQ9Y2K7 1162 aa20.27■□□□□ 0.83
UBE3B-202ENST00000342494 SALL2Q9Y467 1007 aaPredicted RBP20.26■□□□□ 0.83
UBE3B-202ENST00000342494 MTUS2Q5JR59 1369 aa20.25■□□□□ 0.83
UBE3B-202ENST00000342494 FAM9BQ8IZU0 186 aa20.25■□□□□ 0.83
UBE3B-202ENST00000342494 PPP1R15AO75807 674 aaPredicted RBP20.23■□□□□ 0.83
UBE3B-202ENST00000342494 KCNH8Q96L42 1107 aa20.23■□□□□ 0.83
UBE3B-202ENST00000342494 HNRNPUQ00839 825 aaKnown RBP eCLIP20.21■□□□□ 0.83
UBE3B-202ENST00000342494 UPF2Q9HAU5 1272 aaKnown RBP20.21■□□□□ 0.83
UBE3B-202ENST00000342494 C14orf37Q86TY3 774 aa20.2■□□□□ 0.82
UBE3B-202ENST00000342494 TMC1Q8TDI8 760 aa20.2■□□□□ 0.82
UBE3B-202ENST00000342494 WDR43Q15061 677 aaKnown RBP eCLIP20.2■□□□□ 0.82
UBE3B-202ENST00000342494 PLEKHG5O94827 1062 aa20.2■□□□□ 0.82
UBE3B-202ENST00000342494 ZBTB7CA1YPR0 619 aa20.2■□□□□ 0.82
UBE3B-202ENST00000342494 DDX10Q13206 875 aaKnown RBP20.19■□□□□ 0.82
UBE3B-202ENST00000342494 SENP3Q9H4L4 574 aaPredicted RBP20.18■□□□□ 0.82
UBE3B-202ENST00000342494 ARID4BQ4LE39 1312 aaPredicted RBP20.14■□□□□ 0.81
UBE3B-202ENST00000342494 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.13■□□□□ 0.81
UBE3B-202ENST00000342494 ANP32BQ92688 251 aaKnown RBP20.13■□□□□ 0.81
UBE3B-202ENST00000342494 PLEKHD1A6NEE1 506 aa20.12■□□□□ 0.81
UBE3B-202ENST00000342494 HAP1P54257 671 aaPredicted RBP20.08■□□□□ 0.81
UBE3B-202ENST00000342494 FKBP8Q14318 412 aa20.08■□□□□ 0.81
UBE3B-202ENST00000342494 RRP7BPQ9NSQ0 103 aa20.04■□□□□ 0.8
UBE3B-202ENST00000342494 MRS2Q9HD23 443 aa20.03■□□□□ 0.8
UBE3B-202ENST00000342494 ACIN1Q9UKV3 1341 aaKnown RBP20.02■□□□□ 0.8
UBE3B-202ENST00000342494 ZCCHC6Q5VYS8 1495 aaKnown RBP20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms