RNA–Protein interactions for RNA: ENST00000396521.3

EXOSC3-202, Transcript of exosome component 3, humanhuman

TSL 2 BASIC

Gene EXOSC3, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-202ENST00000396521 NISCHQ9Y2I1 1504 aa44.04■■■■■ 4.64
EXOSC3-202ENST00000396521 ABCC9O60706 1549 aa39.77■■■■□ 3.96
EXOSC3-202ENST00000396521 CCDC180Q9P1Z9 1646 aa39.58■■■■□ 3.93
EXOSC3-202ENST00000396521 RB1CC1Q8TDY2 1594 aa37.85■■■■□ 3.65
EXOSC3-202ENST00000396521 NACADO15069 1562 aa37.57■■■■□ 3.6
EXOSC3-202ENST00000396521 DNAJC5BQ9UF47 199 aa37.53■■■■□ 3.6
EXOSC3-202ENST00000396521 DCAF8L2P0C7V8 631 aa37.29■■■■□ 3.56
EXOSC3-202ENST00000396521 MYO15BQ96JP2 1530 aa37.07■■■■□ 3.53
EXOSC3-202ENST00000396521 PABPN1Q86U42 306 aaKnown RBP eCLIP37.02■■■■□ 3.52
EXOSC3-202ENST00000396521 UNC13AQ9UPW8 1703 aa36.71■■■■□ 3.47
EXOSC3-202ENST00000396521 BICRAQ9NZM4 1560 aa36.63■■■■□ 3.45
EXOSC3-202ENST00000396521 DCAF1Q9Y4B6 1507 aa36.46■■■■□ 3.43
EXOSC3-202ENST00000396521 ZCCHC6Q5VYS8 1495 aaKnown RBP36.43■■■■□ 3.42
EXOSC3-202ENST00000396521 SHROOM4Q9ULL8 1493 aa36.38■■■■□ 3.41
EXOSC3-202ENST00000396521 SCRIBQ14160 1630 aa35.94■■■■□ 3.34
EXOSC3-202ENST00000396521 CECR2Q9BXF3 1484 aa35.92■■■■□ 3.34
EXOSC3-202ENST00000396521 CC2D2AQ9P2K1 1620 aa35.9■■■■□ 3.34
EXOSC3-202ENST00000396521 EIF4G1Q04637 1599 aaKnown RBP35.81■■■■□ 3.32
EXOSC3-202ENST00000396521 DNAJC5Q9H3Z4 198 aa34.8■■■■□ 3.16
EXOSC3-202ENST00000396521 NCAPD3P42695 1498 aa34.73■■■■□ 3.15
EXOSC3-202ENST00000396521 CUX2O14529 1486 aa34.52■■■■□ 3.12
EXOSC3-202ENST00000396521 ATAD2BQ9ULI0 1458 aa34.51■■■■□ 3.11
EXOSC3-202ENST00000396521 ERCC6Q03468 1493 aa34.45■■■■□ 3.1
EXOSC3-202ENST00000396521 SMARCA2P51531 1590 aa34.44■■■■□ 3.1
EXOSC3-202ENST00000396521 HMGXB3Q12766 1538 aa34.38■■■■□ 3.09
EXOSC3-202ENST00000396521 SMARCA4P51532 1647 aa34.33■■■■□ 3.09
EXOSC3-202ENST00000396521 BAZ1AQ9NRL2 1556 aaPredicted RBP34.23■■■■□ 3.07
EXOSC3-202ENST00000396521 BAZ1BQ9UIG0 1483 aaKnown RBP34.16■■■■□ 3.06
EXOSC3-202ENST00000396521 PEG3Q9GZU2 1588 aa34.1■■■■□ 3.05
EXOSC3-202ENST00000396521 NESP48681 1621 aa34.04■■■■□ 3.04
EXOSC3-202ENST00000396521 LAMC3Q9Y6N6 1575 aa33.91■■■■□ 3.02
EXOSC3-202ENST00000396521 MROH2BQ7Z745 1585 aa33.85■■■■□ 3.01
EXOSC3-202ENST00000396521 PDS5BQ9NTI5 1447 aa33.82■■■■□ 3
EXOSC3-202ENST00000396521 THOC2Q8NI27 1593 aaKnown RBP33.75■■■□□ 2.99
EXOSC3-202ENST00000396521 CADPSQ9ULU8 1353 aa33.65■■■□□ 2.98
EXOSC3-202ENST00000396521 KIF21AQ7Z4S6 1674 aa33.52■■■□□ 2.96
EXOSC3-202ENST00000396521 MRC2Q9UBG0 1479 aa33.44■■■□□ 2.94
EXOSC3-202ENST00000396521 WIZO95785 1651 aa33.35■■■□□ 2.93
EXOSC3-202ENST00000396521 WDR62O43379 1518 aa33.33■■■□□ 2.93
EXOSC3-202ENST00000396521 CEP164Q9UPV0 1460 aa33.27■■■□□ 2.92
EXOSC3-202ENST00000396521 FANCD2Q9BXW9 1451 aa33.2■■■□□ 2.91
EXOSC3-202ENST00000396521 CFTRP13569 1480 aa33.19■■■□□ 2.9
EXOSC3-202ENST00000396521 RSF1Q96T23 1441 aaPredicted RBP33.15■■■□□ 2.9
EXOSC3-202ENST00000396521 TRIM41Q8WV44 630 aa33.05■■■□□ 2.88
EXOSC3-202ENST00000396521 TOP2AP11388 1531 aaKnown RBP33.05■■■□□ 2.88
EXOSC3-202ENST00000396521 OSCARQ8IYS5 282 aa32.97■■■□□ 2.87
EXOSC3-202ENST00000396521 URB2Q14146 1524 aaKnown RBP32.87■■■□□ 2.85
EXOSC3-202ENST00000396521 CCDC88BA6NC98 1476 aa32.68■■■□□ 2.82
EXOSC3-202ENST00000396521 IFT140Q96RY7 1462 aa32.66■■■□□ 2.82
EXOSC3-202ENST00000396521 PRDM2Q13029 1718 aa32.62■■■□□ 2.81
EXOSC3-202ENST00000396521 ABCC8Q09428 1581 aa32.6■■■□□ 2.81
EXOSC3-202ENST00000396521 TOPBP1Q92547 1522 aa32.51■■■□□ 2.8
EXOSC3-202ENST00000396521 ZNF608Q9ULD9 1512 aaPredicted RBP32.48■■■□□ 2.79
EXOSC3-202ENST00000396521 DNMBPQ6XZF7 1577 aa32.37■■■□□ 2.77
EXOSC3-202ENST00000396521 RIMBP3CA6NJZ7 1639 aa32.32■■■□□ 2.76
EXOSC3-202ENST00000396521 RIMBP3BA6NNM3 1639 aa32.32■■■□□ 2.76
EXOSC3-202ENST00000396521 RIMBP3Q9UFD9 1639 aa32.32■■■□□ 2.76
EXOSC3-202ENST00000396521 ARHGEF11O15085 1522 aa32.27■■■□□ 2.76
EXOSC3-202ENST00000396521 EIF4G3O43432 1585 aaKnown RBP32.27■■■□□ 2.76
EXOSC3-202ENST00000396521 AQRO60306 1485 aaKnown RBP eCLIP32.22■■■□□ 2.752e-6■■■□□ 15.2
EXOSC3-202ENST00000396521 TARBP1Q13395 1621 aaKnown RBP32.19■■■□□ 2.74
EXOSC3-202ENST00000396521 POLA1P09884 1462 aaPredicted RBP32.17■■■□□ 2.74
EXOSC3-202ENST00000396521 CYB5RLQ6IPT4 315 aa32.13■■■□□ 2.73
EXOSC3-202ENST00000396521 FBLN2P98095 1184 aa32.11■■■□□ 2.73
EXOSC3-202ENST00000396521 SOGA1O94964 1423 aa32.09■■■□□ 2.73
EXOSC3-202ENST00000396521 TDRD9Q8NDG6 1382 aaKnown RBP32.01■■■□□ 2.71
EXOSC3-202ENST00000396521 RAD54L2Q9Y4B4 1467 aa32■■■□□ 2.71
EXOSC3-202ENST00000396521 WDR97A6NE52 1622 aa32■■■□□ 2.71
EXOSC3-202ENST00000396521 CHD1O14646 1710 aa31.99■■■□□ 2.71
EXOSC3-202ENST00000396521 FGD5Q6ZNL6 1462 aa31.92■■■□□ 2.7
EXOSC3-202ENST00000396521 ARAP1Q96P48 1450 aa31.92■■■□□ 2.7
EXOSC3-202ENST00000396521 CHMP7Q8WUX9 453 aaPredicted RBP31.91■■■□□ 2.7
EXOSC3-202ENST00000396521 MAGI1Q96QZ7 1491 aaPredicted RBP31.88■■■□□ 2.69
EXOSC3-202ENST00000396521 SNAPC4Q5SXM2 1469 aa31.86■■■□□ 2.69
EXOSC3-202ENST00000396521 TRHP20396 242 aaPredicted RBP31.86■■■□□ 2.69
EXOSC3-202ENST00000396521 GRIN2BQ13224 1484 aa31.84■■■□□ 2.69
EXOSC3-202ENST00000396521 CUX1P39880 1505 aa31.82■■■□□ 2.68
EXOSC3-202ENST00000396521 SYNJ1O43426 1573 aa31.77■■■□□ 2.68
EXOSC3-202ENST00000396521 SYNJ2O15056 1496 aa31.76■■■□□ 2.67
EXOSC3-202ENST00000396521 CLASP1Q7Z460 1538 aa31.75■■■□□ 2.67
EXOSC3-202ENST00000396521 GAPVD1Q14C86 1478 aa31.67■■■□□ 2.66
EXOSC3-202ENST00000396521 ABCA10Q8WWZ4 1543 aa31.61■■■□□ 2.65
EXOSC3-202ENST00000396521 WRNQ14191 1432 aaPredicted RBP eCLIP31.5■■■□□ 2.63
EXOSC3-202ENST00000396521 PBRM1Q86U86 1689 aa31.48■■■□□ 2.63
EXOSC3-202ENST00000396521 SUPT5HO00267 1087 aaKnown RBP31.48■■■□□ 2.63
EXOSC3-202ENST00000396521 ABCA5Q8WWZ7 1642 aa31.48■■■□□ 2.63
EXOSC3-202ENST00000396521 GRIN2AQ12879 1464 aa31.4■■■□□ 2.62
EXOSC3-202ENST00000396521 NUP160Q12769 1436 aa31.32■■■□□ 2.61
EXOSC3-202ENST00000396521 FHAD1B1AJZ9 1412 aa31.31■■■□□ 2.6
EXOSC3-202ENST00000396521 TOP2BQ02880 1626 aa31.28■■■□□ 2.6
EXOSC3-202ENST00000396521 ADAMTS12P58397 1594 aa31.26■■■□□ 2.59
EXOSC3-202ENST00000396521 BIVM-ERCC5R4GMW8 1640 aa31.24■■■□□ 2.59
EXOSC3-202ENST00000396521 ERICH3Q5RHP9 1530 aa31.22■■■□□ 2.59
EXOSC3-202ENST00000396521 CEP170Q5SW79 1584 aa31.18■■■□□ 2.58
EXOSC3-202ENST00000396521 AEBP2Q6ZN18 517 aaPredicted RBP31.16■■■□□ 2.58
EXOSC3-202ENST00000396521 ERCC6L2Q5T890 1561 aa31.13■■■□□ 2.57
EXOSC3-202ENST00000396521 SHROOM2Q13796 1616 aa31.12■■■□□ 2.57
EXOSC3-202ENST00000396521 JPH4Q96JJ6 628 aa31.07■■■□□ 2.56
EXOSC3-202ENST00000396521 PRG4Q92954 1404 aaPredicted RBP31.03■■■□□ 2.56
EXOSC3-202ENST00000396521 NPM1P06748 294 aaKnown RBP eCLIP30.91■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms