RNA–Protein interactions for RNA: ENST00000215917.11

SRRD-201, Transcript of SRR1 domain containing, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRRD, Length 4,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRD-201ENST00000215917 NISCHQ9Y2I1 1504 aa30.9■■■□□ 2.54
SRRD-201ENST00000215917 SHROOM4Q9ULL8 1493 aa26.46■■□□□ 1.83
SRRD-201ENST00000215917 DCAF8L2P0C7V8 631 aa26.39■■□□□ 1.82
SRRD-201ENST00000215917 CCDC180Q9P1Z9 1646 aa26.28■■□□□ 1.8
SRRD-201ENST00000215917 ZCCHC6Q5VYS8 1495 aaKnown RBP25.99■■□□□ 1.75
SRRD-201ENST00000215917 SUPT5HO00267 1087 aaKnown RBP25.86■■□□□ 1.73
SRRD-201ENST00000215917 ABCC9O60706 1549 aa25.25■■□□□ 1.63
SRRD-201ENST00000215917 DCAF1Q9Y4B6 1507 aa25.15■■□□□ 1.62
SRRD-201ENST00000215917 SCRIBQ14160 1630 aa24.89■■□□□ 1.58
SRRD-201ENST00000215917 CHIC1Q5VXU3 224 aa24.63■■□□□ 1.53
SRRD-201ENST00000215917 MYO15BQ96JP2 1530 aa24.56■■□□□ 1.52
SRRD-201ENST00000215917 NACADO15069 1562 aa24.54■■□□□ 1.52
SRRD-201ENST00000215917 PCGF6Q9BYE7 350 aa24.49■■□□□ 1.51
SRRD-201ENST00000215917 EHMT2Q96KQ7 1210 aa24.42■■□□□ 1.5
SRRD-201ENST00000215917 RSF1Q96T23 1441 aaPredicted RBP24.35■■□□□ 1.49
SRRD-201ENST00000215917 RB1CC1Q8TDY2 1594 aa24.31■■□□□ 1.48
SRRD-201ENST00000215917 CECR2Q9BXF3 1484 aa24.29■■□□□ 1.48
SRRD-201ENST00000215917 LOC105371045A0A1W2PR82 267 aa24.2■■□□□ 1.47
SRRD-201ENST00000215917 PABPN1Q86U42 306 aaKnown RBP eCLIP24.19■■□□□ 1.46
SRRD-201ENST00000215917 MROH2BQ7Z745 1585 aa24.08■■□□□ 1.45
SRRD-201ENST00000215917 FAM9AQ8IZU1 332 aaPredicted RBP24.05■■□□□ 1.44
SRRD-201ENST00000215917 PPARGC1BQ86YN6 1023 aaKnown RBP24.02■■□□□ 1.44
SRRD-201ENST00000215917 WIZO95785 1651 aa23.91■■□□□ 1.42
SRRD-201ENST00000215917 TRIM41Q8WV44 630 aa23.9■■□□□ 1.42
SRRD-201ENST00000215917 UNC13AQ9UPW8 1703 aa23.81■■□□□ 1.4
SRRD-201ENST00000215917 BAZ1AQ9NRL2 1556 aaPredicted RBP23.76■■□□□ 1.39
SRRD-201ENST00000215917 HRCP23327 699 aa23.7■■□□□ 1.38
SRRD-201ENST00000215917 TTBK1Q5TCY1 1321 aaPredicted RBP23.64■■□□□ 1.38
SRRD-201ENST00000215917 BICRAQ9NZM4 1560 aa23.63■■□□□ 1.37
SRRD-201ENST00000215917 SMARCA4P51532 1647 aa23.6■■□□□ 1.37
SRRD-201ENST00000215917 CCDC88BA6NC98 1476 aa23.45■■□□□ 1.34
SRRD-201ENST00000215917 TOP2AP11388 1531 aaKnown RBP23.43■■□□□ 1.34
SRRD-201ENST00000215917 TRIM26Q12899 539 aaPredicted RBP23.34■■□□□ 1.33
SRRD-201ENST00000215917 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
SRRD-201ENST00000215917 ABCC8Q09428 1581 aa23.29■■□□□ 1.32
SRRD-201ENST00000215917 YTHDC1Q96MU7 727 aaKnown RBP23.2■■□□□ 1.31
SRRD-201ENST00000215917 ATAD2BQ9ULI0 1458 aa23.2■■□□□ 1.31
SRRD-201ENST00000215917 PELP1Q8IZL8 1130 aaKnown RBP23.17■■□□□ 1.3
SRRD-201ENST00000215917 BAZ1BQ9UIG0 1483 aaKnown RBP23.17■■□□□ 1.3
SRRD-201ENST00000215917 EIF4G1Q04637 1599 aaKnown RBP23.13■■□□□ 1.29
SRRD-201ENST00000215917 PEG3Q9GZU2 1588 aa23.03■■□□□ 1.28
SRRD-201ENST00000215917 SOGA1O94964 1423 aa23.02■■□□□ 1.28
SRRD-201ENST00000215917 CCER1Q8TC90 406 aaPredicted RBP23■■□□□ 1.27
SRRD-201ENST00000215917 UBTFP17480 764 aaKnown RBP22.94■■□□□ 1.26
SRRD-201ENST00000215917 WRNQ14191 1432 aaPredicted RBP eCLIP22.93■■□□□ 1.26
SRRD-201ENST00000215917 RUSC2Q8N2Y8 1516 aa22.93■■□□□ 1.26
SRRD-201ENST00000215917 RANGAP1P46060 587 aaPredicted RBP22.9■■□□□ 1.26
SRRD-201ENST00000215917 CSRNP3Q8WYN3 585 aa22.88■■□□□ 1.25
SRRD-201ENST00000215917 CENPBP07199 599 aaPredicted RBP22.87■■□□□ 1.25
SRRD-201ENST00000215917 NCAPD3P42695 1498 aa22.77■■□□□ 1.24
SRRD-201ENST00000215917 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.76■■□□□ 1.23
SRRD-201ENST00000215917 SYNJ1O43426 1573 aa22.76■■□□□ 1.23
SRRD-201ENST00000215917 ZEB1P37275 1124 aaPredicted RBP22.75■■□□□ 1.23
SRRD-201ENST00000215917 HMGXB3Q12766 1538 aa22.64■■□□□ 1.21
SRRD-201ENST00000215917 CEP162Q5TB80 1403 aa22.63■■□□□ 1.21
SRRD-201ENST00000215917 EEA1Q15075 1411 aa22.6■■□□□ 1.21
SRRD-201ENST00000215917 GTF3C3Q9Y5Q9 886 aa22.58■■□□□ 1.21
SRRD-201ENST00000215917 TNIKQ9UKE5 1360 aa22.56■■□□□ 1.2
SRRD-201ENST00000215917 CC2D2AQ9P2K1 1620 aa22.53■■□□□ 1.2
SRRD-201ENST00000215917 GOLGA3Q08378 1498 aa22.52■■□□□ 1.2
SRRD-201ENST00000215917 SCAF1Q9H7N4 1312 aaKnown RBP22.48■■□□□ 1.19
SRRD-201ENST00000215917 CFTRP13569 1480 aa22.48■■□□□ 1.19
SRRD-201ENST00000215917 CEP164Q9UPV0 1460 aa22.43■■□□□ 1.18
SRRD-201ENST00000215917 RAPGEF2Q9Y4G8 1499 aa22.43■■□□□ 1.18
SRRD-201ENST00000215917 TOP2BQ02880 1626 aa22.43■■□□□ 1.18
SRRD-201ENST00000215917 DNAJC5BQ9UF47 199 aa22.43■■□□□ 1.18
SRRD-201ENST00000215917 CUX1P39880 1505 aa22.42■■□□□ 1.18
SRRD-201ENST00000215917 CADPSQ9ULU8 1353 aa22.42■■□□□ 1.18
SRRD-201ENST00000215917 HNRNPUL2Q1KMD3 747 aaKnown RBP22.41■■□□□ 1.18
SRRD-201ENST00000215917 APLP2Q06481 763 aa22.4■■□□□ 1.18
SRRD-201ENST00000215917 DIEXFQ68CQ4 756 aaKnown RBP22.35■■□□□ 1.17
SRRD-201ENST00000215917 CLIP1P30622 1438 aa22.35■■□□□ 1.17
SRRD-201ENST00000215917 NESP48681 1621 aa22.3■■□□□ 1.16
SRRD-201ENST00000215917 MYT1Q01538 1121 aa22.29■■□□□ 1.16
SRRD-201ENST00000215917 BIVM-ERCC5R4GMW8 1640 aa22.28■■□□□ 1.16
SRRD-201ENST00000215917 KIF27Q86VH2 1401 aa22.27■■□□□ 1.16
SRRD-201ENST00000215917 KIF21BO75037 1637 aa22.25■■□□□ 1.15
SRRD-201ENST00000215917 CUX2O14529 1486 aa22.22■■□□□ 1.15
SRRD-201ENST00000215917 NEUROD1Q13562 356 aa22.22■■□□□ 1.15
SRRD-201ENST00000215917 FANCD2Q9BXW9 1451 aa22.21■■□□□ 1.15
SRRD-201ENST00000215917 ACIN1Q9UKV3 1341 aaKnown RBP22.18■■□□□ 1.14
SRRD-201ENST00000215917 FGD5Q6ZNL6 1462 aa22.16■■□□□ 1.14
SRRD-201ENST00000215917 PRXQ9BXM0 1461 aa22.14■■□□□ 1.13
SRRD-201ENST00000215917 VPS8Q8N3P4 1428 aa22.09■■□□□ 1.13
SRRD-201ENST00000215917 RAD54L2Q9Y4B4 1467 aa22.09■■□□□ 1.13
SRRD-201ENST00000215917 IGF1RP08069 1367 aa22.08■■□□□ 1.13
SRRD-201ENST00000215917 ERICH6Q7L0X2 663 aa22.06■■□□□ 1.12
SRRD-201ENST00000215917 P3H3Q8IVL6 736 aa22.06■■□□□ 1.12
SRRD-201ENST00000215917 BCANQ96GW7 911 aa22.05■■□□□ 1.12
SRRD-201ENST00000215917 ITGAEP38570 1179 aa22.03■■□□□ 1.12
SRRD-201ENST00000215917 CARMIL1Q5VZK9 1371 aa22.03■■□□□ 1.12
SRRD-201ENST00000215917 ATP1B4Q9UN42 357 aaPredicted RBP22.02■■□□□ 1.11
SRRD-201ENST00000215917 PRDM2Q13029 1718 aa22■■□□□ 1.11
SRRD-201ENST00000215917 ERICH3Q5RHP9 1530 aa21.99■■□□□ 1.11
SRRD-201ENST00000215917 KANK4Q5T7N3 995 aaPredicted RBP21.97■■□□□ 1.11
SRRD-201ENST00000215917 TOPBP1Q92547 1522 aa21.96■■□□□ 1.11
SRRD-201ENST00000215917 ARAP1Q96P48 1450 aa21.95■■□□□ 1.1
SRRD-201ENST00000215917 POLA1P09884 1462 aaPredicted RBP21.94■■□□□ 1.1
SRRD-201ENST00000215917 TDRD9Q8NDG6 1382 aaKnown RBP21.94■■□□□ 1.1
SRRD-201ENST00000215917 DNMBPQ6XZF7 1577 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 599.3 ms