RNA–Protein interactions for RNA: ENST00000424922.5

CALD1-206, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-206ENST00000424922 NISCHQ9Y2I1 1504 aa34.31■■■■□ 3.08
CALD1-206ENST00000424922 CCDC180Q9P1Z9 1646 aa30.05■■■□□ 2.4
CALD1-206ENST00000424922 ZCCHC6Q5VYS8 1495 aaKnown RBP28.77■■■□□ 2.2
CALD1-206ENST00000424922 ABCC9O60706 1549 aa28.61■■■□□ 2.17
CALD1-206ENST00000424922 DCAF8L2P0C7V8 631 aa28.46■■■□□ 2.15
CALD1-206ENST00000424922 DCAF1Q9Y4B6 1507 aa28.34■■■□□ 2.13
CALD1-206ENST00000424922 MYO15BQ96JP2 1530 aa28.08■■■□□ 2.09
CALD1-206ENST00000424922 NACADO15069 1562 aa28.01■■■□□ 2.07
CALD1-206ENST00000424922 SHROOM4Q9ULL8 1493 aa27.89■■■□□ 2.05
CALD1-206ENST00000424922 RB1CC1Q8TDY2 1594 aa27.84■■■□□ 2.05
CALD1-206ENST00000424922 SCRIBQ14160 1630 aa27.62■■■□□ 2.01
CALD1-206ENST00000424922 UNC13AQ9UPW8 1703 aa27.37■■□□□ 1.97
CALD1-206ENST00000424922 BICRAQ9NZM4 1560 aa27.01■■□□□ 1.91
CALD1-206ENST00000424922 PABPN1Q86U42 306 aaKnown RBP eCLIP26.93■■□□□ 1.9
CALD1-206ENST00000424922 SUPT5HO00267 1087 aaKnown RBP26.72■■□□□ 1.87
CALD1-206ENST00000424922 CECR2Q9BXF3 1484 aa26.69■■□□□ 1.86
CALD1-206ENST00000424922 RSF1Q96T23 1441 aaPredicted RBP26.53■■□□□ 1.84
CALD1-206ENST00000424922 MROH2BQ7Z745 1585 aa26.52■■□□□ 1.84
CALD1-206ENST00000424922 BAZ1AQ9NRL2 1556 aaPredicted RBP26.52■■□□□ 1.84
CALD1-206ENST00000424922 SMARCA4P51532 1647 aa26.45■■□□□ 1.82
CALD1-206ENST00000424922 WIZO95785 1651 aa26.33■■□□□ 1.81
CALD1-206ENST00000424922 EIF4G1Q04637 1599 aaKnown RBP26.21■■□□□ 1.79
CALD1-206ENST00000424922 PEG3Q9GZU2 1588 aa26.1■■□□□ 1.77
CALD1-206ENST00000424922 ATAD2BQ9ULI0 1458 aa26.04■■□□□ 1.76
CALD1-206ENST00000424922 SMARCA2P51531 1590 aa26.02■■□□□ 1.76
CALD1-206ENST00000424922 TOP2AP11388 1531 aaKnown RBP26■■□□□ 1.75
CALD1-206ENST00000424922 CC2D2AQ9P2K1 1620 aa25.9■■□□□ 1.74
CALD1-206ENST00000424922 BAZ1BQ9UIG0 1483 aaKnown RBP25.89■■□□□ 1.74
CALD1-206ENST00000424922 NCAPD3P42695 1498 aa25.83■■□□□ 1.73
CALD1-206ENST00000424922 HMGXB3Q12766 1538 aa25.79■■□□□ 1.72
CALD1-206ENST00000424922 CCDC88BA6NC98 1476 aa25.74■■□□□ 1.71
CALD1-206ENST00000424922 CHIC1Q5VXU3 224 aa25.43■■□□□ 1.66
CALD1-206ENST00000424922 DNAJC5BQ9UF47 199 aa25.42■■□□□ 1.66
CALD1-206ENST00000424922 CFTRP13569 1480 aa25.21■■□□□ 1.63
CALD1-206ENST00000424922 PRDM2Q13029 1718 aa25.17■■□□□ 1.62
CALD1-206ENST00000424922 ABCC8Q09428 1581 aa25.16■■□□□ 1.62
CALD1-206ENST00000424922 CADPSQ9ULU8 1353 aa25.16■■□□□ 1.62
CALD1-206ENST00000424922 TRIM41Q8WV44 630 aa25.12■■□□□ 1.61
CALD1-206ENST00000424922 NESP48681 1621 aa25.06■■□□□ 1.6
CALD1-206ENST00000424922 LAMC3Q9Y6N6 1575 aa25.02■■□□□ 1.6
CALD1-206ENST00000424922 WRNQ14191 1432 aaPredicted RBP eCLIP24.98■■□□□ 1.59
CALD1-206ENST00000424922 SYNJ1O43426 1573 aa24.92■■□□□ 1.58
CALD1-206ENST00000424922 FANCD2Q9BXW9 1451 aa24.91■■□□□ 1.58
CALD1-206ENST00000424922 TOP2BQ02880 1626 aa24.83■■□□□ 1.57
CALD1-206ENST00000424922 BIVM-ERCC5R4GMW8 1640 aa24.82■■□□□ 1.56
CALD1-206ENST00000424922 PDS5BQ9NTI5 1447 aa24.81■■□□□ 1.56
CALD1-206ENST00000424922 CUX1P39880 1505 aa24.81■■□□□ 1.56
CALD1-206ENST00000424922 KIF21AQ7Z4S6 1674 aa24.8■■□□□ 1.56
CALD1-206ENST00000424922 CEP164Q9UPV0 1460 aa24.77■■□□□ 1.56
CALD1-206ENST00000424922 FAM9AQ8IZU1 332 aaPredicted RBP24.68■■□□□ 1.54
CALD1-206ENST00000424922 DNMBPQ6XZF7 1577 aa24.65■■□□□ 1.54
CALD1-206ENST00000424922 TOPBP1Q92547 1522 aa24.62■■□□□ 1.53
CALD1-206ENST00000424922 SOGA1O94964 1423 aa24.62■■□□□ 1.53
CALD1-206ENST00000424922 URB2Q14146 1524 aaKnown RBP24.61■■□□□ 1.53
CALD1-206ENST00000424922 FGD5Q6ZNL6 1462 aa24.57■■□□□ 1.52
CALD1-206ENST00000424922 RUSC2Q8N2Y8 1516 aa24.56■■□□□ 1.52
CALD1-206ENST00000424922 ERCC6Q03468 1493 aa24.55■■□□□ 1.52
CALD1-206ENST00000424922 MRC2Q9UBG0 1479 aa24.52■■□□□ 1.52
CALD1-206ENST00000424922 LOC105371045A0A1W2PR82 267 aa24.49■■□□□ 1.51
CALD1-206ENST00000424922 POLA1P09884 1462 aaPredicted RBP24.48■■□□□ 1.51
CALD1-206ENST00000424922 EEA1Q15075 1411 aa24.48■■□□□ 1.51
CALD1-206ENST00000424922 RAD54L2Q9Y4B4 1467 aa24.41■■□□□ 1.5
CALD1-206ENST00000424922 WDR62O43379 1518 aa24.4■■□□□ 1.5
CALD1-206ENST00000424922 THOC2Q8NI27 1593 aaKnown RBP24.4■■□□□ 1.5
CALD1-206ENST00000424922 CSRNP3Q8WYN3 585 aa24.4■■□□□ 1.5
CALD1-206ENST00000424922 EHMT2Q96KQ7 1210 aa24.37■■□□□ 1.49
CALD1-206ENST00000424922 KIF27Q86VH2 1401 aa24.37■■□□□ 1.49
CALD1-206ENST00000424922 CUX2O14529 1486 aa24.37■■□□□ 1.49
CALD1-206ENST00000424922 ABCA10Q8WWZ4 1543 aa24.33■■□□□ 1.49
CALD1-206ENST00000424922 WDR97A6NE52 1622 aa24.32■■□□□ 1.48
CALD1-206ENST00000424922 TARBP1Q13395 1621 aaKnown RBP24.29■■□□□ 1.48
CALD1-206ENST00000424922 KIF21BO75037 1637 aa24.22■■□□□ 1.47
CALD1-206ENST00000424922 TDRD9Q8NDG6 1382 aaKnown RBP24.19■■□□□ 1.46
CALD1-206ENST00000424922 ABCA5Q8WWZ7 1642 aa24.18■■□□□ 1.46
CALD1-206ENST00000424922 IFT140Q96RY7 1462 aa24.17■■□□□ 1.46
CALD1-206ENST00000424922 IGF1RP08069 1367 aa24.17■■□□□ 1.46
CALD1-206ENST00000424922 GOLGA3Q08378 1498 aa24.16■■□□□ 1.46
CALD1-206ENST00000424922 PRXQ9BXM0 1461 aa24.14■■□□□ 1.45
CALD1-206ENST00000424922 GAPVD1Q14C86 1478 aa24.13■■□□□ 1.45
CALD1-206ENST00000424922 RAPGEF2Q9Y4G8 1499 aa24.13■■□□□ 1.45
CALD1-206ENST00000424922 UBTFP17480 764 aaKnown RBP24.1■■□□□ 1.45
CALD1-206ENST00000424922 ERICH3Q5RHP9 1530 aa24.08■■□□□ 1.45
CALD1-206ENST00000424922 ZNF608Q9ULD9 1512 aaPredicted RBP24.08■■□□□ 1.45
CALD1-206ENST00000424922 AQRO60306 1485 aaKnown RBP eCLIP24.08■■□□□ 1.445e-16■■□□□ 11.9
CALD1-206ENST00000424922 PBRM1Q86U86 1689 aa24.07■■□□□ 1.44
CALD1-206ENST00000424922 CARMIL1Q5VZK9 1371 aa24.05■■□□□ 1.44
CALD1-206ENST00000424922 CUL7Q14999 1698 aa24.04■■□□□ 1.44
CALD1-206ENST00000424922 TNIKQ9UKE5 1360 aa24.03■■□□□ 1.44
CALD1-206ENST00000424922 EIF4G3O43432 1585 aaKnown RBP24.01■■□□□ 1.43
CALD1-206ENST00000424922 GRIN2BQ13224 1484 aa23.96■■□□□ 1.43
CALD1-206ENST00000424922 CEP162Q5TB80 1403 aa23.91■■□□□ 1.42
CALD1-206ENST00000424922 ADAMTS12P58397 1594 aa23.87■■□□□ 1.41
CALD1-206ENST00000424922 FHAD1B1AJZ9 1412 aa23.84■■□□□ 1.41
CALD1-206ENST00000424922 SNAPC4Q5SXM2 1469 aa23.84■■□□□ 1.41
CALD1-206ENST00000424922 RANGAP1P46060 587 aaPredicted RBP23.81■■□□□ 1.4
CALD1-206ENST00000424922 CTTNBP2Q8WZ74 1663 aa23.79■■□□□ 1.4
CALD1-206ENST00000424922 MAGI1Q96QZ7 1491 aaPredicted RBP23.78■■□□□ 1.4
CALD1-206ENST00000424922 CLIP1P30622 1438 aa23.78■■□□□ 1.4
CALD1-206ENST00000424922 SYNJ2O15056 1496 aa23.69■■□□□ 1.38
CALD1-206ENST00000424922 GRIN2AQ12879 1464 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms