Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ZNHIT3-204ENST00000617429 951 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.687e-9■□□□□ 9.6
YBX3P16989 ZNHIT3-210ENST00000620863 881 ntTSL 210.81□□□□□ -0.687e-9■□□□□ 9.6
YBX3P16989 ZNHIT3-212ENST00000622312 567 ntTSL 410.15□□□□□ -0.787e-9■□□□□ 9.6
YBX3P16989 ZNHIT3-203ENST00000616269 616 ntTSL 310.05□□□□□ -0.87e-9■□□□□ 9.6
YBX3P16989 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC8.12□□□□□ -1.117e-9■□□□□ 9.6
YBX3P16989 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.55■□□□□ 0.241e-10■□□□□ 9.6
YBX3P16989 CARS-214ENST00000529772 2637 ntTSL 2 BASIC14.45□□□□□ -0.11e-10■□□□□ 9.6
YBX3P16989 CARS-202ENST00000380525 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.261e-10■□□□□ 9.6
YBX3P16989 CARS-201ENST00000278224 2491 ntTSL 1 (best) BASIC12.75□□□□□ -0.371e-10■□□□□ 9.6
YBX3P16989 CARS-212ENST00000526890 5732 ntTSL 211.41□□□□□ -0.581e-10■□□□□ 9.6
YBX3P16989 CARS-215ENST00000531387 2805 ntTSL 211.01□□□□□ -0.651e-10■□□□□ 9.6
YBX3P16989 PKP4-204ENST00000421462 3099 ntTSL 216.64■□□□□ 0.252e-7■□□□□ 9.6
YBX3P16989 PKP4-206ENST00000452162 2359 ntTSL 1 (best)13.04□□□□□ -0.322e-7■□□□□ 9.6
YBX3P16989 PPIF-202ENST00000448165 821 ntTSL 220.76■□□□□ 0.913e-8■□□□□ 9.6
YBX3P16989 RAC2-207ENST00000481215 480 ntTSL 1 (best)15.56■□□□□ 0.081e-12■□□□□ 9.6
YBX3P16989 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.098e-9■□□□□ 9.6
YBX3P16989 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.088e-9■□□□□ 9.6
YBX3P16989 KDM3A-216ENST00000542128 4311 ntTSL 5 BASIC12.58□□□□□ -0.48e-9■□□□□ 9.6
YBX3P16989 KDM3A-205ENST00000441719 8741 ntTSL 211.03□□□□□ -0.648e-9■□□□□ 9.6
YBX3P16989 KDM3A-202ENST00000409064 4621 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.718e-9■□□□□ 9.6
YBX3P16989 KDM3A-213ENST00000488971 975 ntTSL 35.99□□□□□ -1.458e-9■□□□□ 9.6
YBX3P16989 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.123e-7■□□□□ 9.6
YBX3P16989 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC27.23■■□□□ 1.953e-7■□□□□ 9.6
YBX3P16989 YWHAH-205ENST00000471374 1735 ntTSL 223.16■■□□□ 1.33e-7■□□□□ 9.6
YBX3P16989 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC33.54■■■□□ 2.962e-8■□□□□ 9.6
YBX3P16989 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.07■■■□□ 2.42e-8■□□□□ 9.6
YBX3P16989 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.45■□□□□ 0.542e-8■□□□□ 9.6
YBX3P16989 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.322e-8■□□□□ 9.6
YBX3P16989 HNRNPUL1-208ENST00000595196 3043 ntTSL 1 (best)17■□□□□ 0.312e-8■□□□□ 9.6
YBX3P16989 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.97■□□□□ 0.152e-8■□□□□ 9.6
YBX3P16989 HNRNPUL1-213ENST00000599614 2447 ntTSL 515.54■□□□□ 0.082e-8■□□□□ 9.6
YBX3P16989 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.91□□□□□ -0.022e-8■□□□□ 9.6
YBX3P16989 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.212e-8■□□□□ 9.6
YBX3P16989 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC13.62□□□□□ -0.232e-8■□□□□ 9.6
YBX3P16989 HNRNPUL1-202ENST00000352456 3426 ntTSL 1 (best) BASIC11.92□□□□□ -0.52e-8■□□□□ 9.6
YBX3P16989 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC22.26■■□□□ 1.156e-48■□□□□ 9.6
YBX3P16989 MYL6-216ENST00000550184 1564 ntTSL 518.72■□□□□ 0.596e-48■□□□□ 9.6
YBX3P16989 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.486e-48■□□□□ 9.6
YBX3P16989 MYL6-210ENST00000548400 573 ntTSL 3 BASIC16.24■□□□□ 0.196e-48■□□□□ 9.6
YBX3P16989 MYL6-207ENST00000547649 655 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.396e-48■□□□□ 9.6
YBX3P16989 MYL6-205ENST00000546845 452 ntTSL 312.19□□□□□ -0.466e-48■□□□□ 9.6
YBX3P16989 MYL6-206ENST00000547408 683 ntTSL 3 BASIC12.02□□□□□ -0.496e-48■□□□□ 9.6
YBX3P16989 MYL6-201ENST00000293422 664 ntAPPRIS ALT1 TSL 2 BASIC10.45□□□□□ -0.746e-48■□□□□ 9.6
YBX3P16989 MYL6-211ENST00000548580 528 ntTSL 2 BASIC9.21□□□□□ -0.946e-48■□□□□ 9.6
YBX3P16989 MYL6-213ENST00000549017 502 ntTSL 3 BASIC8.01□□□□□ -1.136e-48■□□□□ 9.6
YBX3P16989 VDAC1-204ENST00000425992 703 ntTSL 331.45■■■□□ 2.632e-9■□□□□ 9.6
YBX3P16989 VDAC1-205ENST00000466080 831 ntTSL 38.03□□□□□ -1.122e-9■□□□□ 9.6
YBX3P16989 POLR2L-202ENST00000534030 585 ntTSL 425.63■■□□□ 1.691e-9■□□□□ 9.6
YBX3P16989 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.661e-9■□□□□ 9.6
YBX3P16989 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC22.2■■□□□ 1.144e-14■□□□□ 9.6
YBX3P16989 RTN3-211ENST00000542238 735 ntTSL 321.42■■□□□ 1.023e-10■□□□□ 9.6
YBX3P16989 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.18■□□□□ 0.983e-9■□□□□ 9.6
YBX3P16989 RTN3-212ENST00000543123 712 ntTSL 217.7■□□□□ 0.423e-10■□□□□ 9.6
YBX3P16989 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.273e-9■□□□□ 9.6
YBX3P16989 EIF2A-214ENST00000487799 1913 ntTSL 2 BASIC12.33□□□□□ -0.442e-7■□□□□ 9.6
YBX3P16989 EIF2A-203ENST00000460851 2198 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.692e-7■□□□□ 9.6
YBX3P16989 EIF2A-204ENST00000462221 817 ntTSL 58.37□□□□□ -1.072e-7■□□□□ 9.6
YBX3P16989 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC8.14□□□□□ -1.112e-7■□□□□ 9.6
YBX3P16989 EIF2A-211ENST00000477551 1906 ntTSL 1 (best)5.71□□□□□ -1.52e-7■□□□□ 9.6
YBX3P16989 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.652e-7■□□□□ 9.6
YBX3P16989 MDH2-206ENST00000461665 551 ntTSL 29.33□□□□□ -0.923e-16■□□□□ 9.6
YBX3P16989 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC23.29■■□□□ 1.329e-9■□□□□ 9.6
YBX3P16989 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC22.04■■□□□ 1.129e-9■□□□□ 9.6
YBX3P16989 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.669e-9■□□□□ 9.6
YBX3P16989 GABARAP-202ENST00000570856 583 ntTSL 216.31■□□□□ 0.29e-9■□□□□ 9.6
YBX3P16989 GABARAP-203ENST00000571129 568 ntTSL 2 BASIC15.05■□□□□ -09e-9■□□□□ 9.6
YBX3P16989 GABARAP-206ENST00000577035 762 ntTSL 2 BASIC14.83□□□□□ -0.049e-9■□□□□ 9.6
YBX3P16989 RPL41-205ENST00000546654 238 ntTSL 28.66□□□□□ -1.021e-8■□□□□ 9.6
YBX3P16989 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC21.92■■□□□ 1.13e-11■□□□□ 9.6
YBX3P16989 FOXK2-204ENST00000527313 779 ntTSL 327.49■■□□□ 1.992e-6■□□□□ 9.6
YBX3P16989 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.337e-10■□□□□ 9.6
YBX3P16989 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC17.09■□□□□ 0.337e-10■□□□□ 9.6
YBX3P16989 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.131e-6■□□□□ 9.6
YBX3P16989 COMMD7-204ENST00000610160 1987 ntTSL 226.11■■□□□ 1.771e-6■□□□□ 9.6
YBX3P16989 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC25.04■■□□□ 1.61e-6■□□□□ 9.6
YBX3P16989 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.85■■□□□ 1.098e-7■□□□□ 9.6
YBX3P16989 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.518e-7■□□□□ 9.6
YBX3P16989 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.65■□□□□ 0.268e-7■□□□□ 9.6
YBX3P16989 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC10.11□□□□□ -0.798e-7■□□□□ 9.6
YBX3P16989 PVT1-202ENST00000512617 383 ntTSL 33.68□□□□□ -1.823e-16■□□□□ 9.6
YBX3P16989 NMT1-210ENST00000590310 704 ntTSL 221.81■■□□□ 1.085e-9■□□□□ 9.6
YBX3P16989 DLAT-205ENST00000533297 2118 ntTSL 219.48■□□□□ 0.713e-6■□□□□ 9.6
YBX3P16989 DLAT-204ENST00000531306 1766 ntTSL 218.66■□□□□ 0.583e-6■□□□□ 9.6
YBX3P16989 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.635e-7■□□□□ 9.6
YBX3P16989 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.335e-7■□□□□ 9.6
YBX3P16989 HEPH-207ENST00000458621 838 ntTSL 212.32□□□□□ -0.449e-16■□□□□ 9.6
YBX3P16989 FUBP1-201ENST00000294623 2201 ntTSL 1 (best)14.67□□□□□ -0.061e-9■□□□□ 9.6
YBX3P16989 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.271e-9■□□□□ 9.6
YBX3P16989 FUBP1-202ENST00000370767 2524 ntTSL 5 BASIC13.24□□□□□ -0.291e-9■□□□□ 9.6
YBX3P16989 FUBP1-205ENST00000470287 726 ntTSL 34.56□□□□□ -1.681e-9■□□□□ 9.6
YBX3P16989 SVIP-201ENST00000354193 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.449e-11■□□□□ 9.6
YBX3P16989 SVIP-203ENST00000529848 263 ntTSL 55.36□□□□□ -1.559e-11■□□□□ 9.6
YBX3P16989 AES-212ENST00000592414 3274 ntTSL 212.61□□□□□ -0.396e-16■□□□□ 9.6
YBX3P16989 ABCE1-204ENST00000504292 625 ntTSL 39.14□□□□□ -0.952e-15■□□□□ 9.6
YBX3P16989 ACTG1-213ENST00000576214 1024 ntTSL 517.25■□□□□ 0.352e-29■□□□□ 9.6
YBX3P16989 ATP5G2-206ENST00000550241 406 ntTSL 311.33□□□□□ -0.64e-24■□□□□ 9.6
YBX3P16989 RACK1-204ENST00000502890 705 ntTSL 313.39□□□□□ -0.273e-43■□□□□ 9.6
YBX3P16989 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.17■□□□□ 0.57e-8■□□□□ 9.6
YBX3P16989 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.217e-8■□□□□ 9.6
YBX3P16989 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC7.19□□□□□ -1.264e-11■□□□□ 9.6
Retrieved 100 of 29,075 protein–RNA pairs in 169.3 ms