RNA–Protein interactions for RNA: ENST00000488971.1

KDM3A-213, Transcript of lysine demethylase 3A, humanhuman

TSL 3

Gene KDM3A, Length 975 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-213ENST00000488971 AEBP2Q6ZN18 517 aaPredicted RBP21.21■□□□□ 0.99
KDM3A-213ENST00000488971 CHIC1Q5VXU3 224 aa20.19■□□□□ 0.82
KDM3A-213ENST00000488971 SENP3Q9H4L4 574 aaPredicted RBP18.14■□□□□ 0.49
KDM3A-213ENST00000488971 PHF23Q9BUL5 403 aaPredicted RBP17.9■□□□□ 0.46
KDM3A-213ENST00000488971 FOXD1Q16676 465 aa16.87■□□□□ 0.29
KDM3A-213ENST00000488971 PLPPR3Q6T4P5 718 aa16.17■□□□□ 0.18
KDM3A-213ENST00000488971 MSH5O43196 834 aa15.82■□□□□ 0.12
KDM3A-213ENST00000488971 PIAS4Q8N2W9 510 aaPredicted RBP15.82■□□□□ 0.12
KDM3A-213ENST00000488971 PPP6R1Q9UPN7 881 aa15.79■□□□□ 0.12
KDM3A-213ENST00000488971 ADRA2BP18089 450 aa15.77■□□□□ 0.12
KDM3A-213ENST00000488971 POTEDQ86YR6 584 aa15.4■□□□□ 0.06
KDM3A-213ENST00000488971 MAPK8IP2Q13387 824 aaPredicted RBP14.48□□□□□ -0.09
KDM3A-213ENST00000488971 SCAF1Q9H7N4 1312 aaKnown RBP14.47□□□□□ -0.09
KDM3A-213ENST00000488971 DMRT2Q9Y5R5 561 aa14.37□□□□□ -0.11
KDM3A-213ENST00000488971 PPP4R3CPQ6ZMV5 832 aa14.18□□□□□ -0.14
KDM3A-213ENST00000488971 CNKSR2Q8WXI2 1034 aa13.91□□□□□ -0.18
KDM3A-213ENST00000488971 DCAF8L1A6NGE4 600 aa13.88□□□□□ -0.19
KDM3A-213ENST00000488971 HOXD11P31277 338 aaPredicted RBP13.83□□□□□ -0.2
KDM3A-213ENST00000488971 RNF216Q9NWF9 866 aaPredicted RBP13.76□□□□□ -0.21
KDM3A-213ENST00000488971 NCBP3Q53F19 620 aaKnown RBP13.68□□□□□ -0.22
KDM3A-213ENST00000488971 CACNB1Q02641 598 aaPredicted RBP13.59□□□□□ -0.23
KDM3A-213ENST00000488971 RNF39Q9H2S5 420 aa13.46□□□□□ -0.25
KDM3A-213ENST00000488971 NPM3O75607 178 aaKnown RBP13.43□□□□□ -0.26
KDM3A-213ENST00000488971 DNAJC5BQ9UF47 199 aa13.32□□□□□ -0.28
KDM3A-213ENST00000488971 C1QBPQ07021 282 aaKnown RBP13.29□□□□□ -0.28
KDM3A-213ENST00000488971 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.27□□□□□ -0.295e-7■□□□□ 11.2
KDM3A-213ENST00000488971 KCNA4P22459 653 aa13.21□□□□□ -0.29
KDM3A-213ENST00000488971 U3KPZ7 1027 aaPredicted RBP12.93□□□□□ -0.34
KDM3A-213ENST00000488971 SLC4A2P04920 1241 aa12.8□□□□□ -0.36
KDM3A-213ENST00000488971 CAPN15O75808 1086 aa12.78□□□□□ -0.36
KDM3A-213ENST00000488971 SPINK5Q9NQ38 1064 aaPredicted RBP12.74□□□□□ -0.37
KDM3A-213ENST00000488971 APLP2Q06481 763 aa12.64□□□□□ -0.39
KDM3A-213ENST00000488971 DSG3P32926 999 aa12.62□□□□□ -0.39
KDM3A-213ENST00000488971 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.61□□□□□ -0.39
KDM3A-213ENST00000488971 HNRNPUL2Q1KMD3 747 aaKnown RBP12.61□□□□□ -0.39
KDM3A-213ENST00000488971 TRHP20396 242 aaPredicted RBP12.58□□□□□ -0.4
KDM3A-213ENST00000488971 SAMD1Q6SPF0 538 aaPredicted RBP12.54□□□□□ -0.4
KDM3A-213ENST00000488971 ZNF219Q9P2Y4 722 aaPredicted RBP12.52□□□□□ -0.41
KDM3A-213ENST00000488971 SLC4A1APQ9BWU0 796 aaKnown RBP12.51□□□□□ -0.41
KDM3A-213ENST00000488971 ABCB7O75027 752 aa12.47□□□□□ -0.41
KDM3A-213ENST00000488971 MYCNP04198 464 aaPredicted RBP12.44□□□□□ -0.42
KDM3A-213ENST00000488971 FOXD4L1Q9NU39 408 aa12.33□□□□□ -0.44
KDM3A-213ENST00000488971 POLA2Q14181 598 aa12.22□□□□□ -0.45
KDM3A-213ENST00000488971 ATF5Q9Y2D1 282 aaPredicted RBP12.12□□□□□ -0.47
KDM3A-213ENST00000488971 ZBTB22O15209 634 aa12.11□□□□□ -0.47
KDM3A-213ENST00000488971 RBM42Q9BTD8 480 aaKnown RBP12.09□□□□□ -0.47
KDM3A-213ENST00000488971 POTEHQ6S545 545 aa12.06□□□□□ -0.48
KDM3A-213ENST00000488971 ZBTB12Q9Y330 459 aaPredicted RBP11.98□□□□□ -0.49
KDM3A-213ENST00000488971 ATXN8OSP0DMR3 200 aa11.93□□□□□ -0.5
KDM3A-213ENST00000488971 OSCARQ8IYS5 282 aa11.82□□□□□ -0.52
KDM3A-213ENST00000488971 CHRDL2Q6WN34 429 aa11.8□□□□□ -0.52
KDM3A-213ENST00000488971 AKT1S1Q96B36 256 aa11.8□□□□□ -0.52
KDM3A-213ENST00000488971 FBLN2P98095 1184 aa11.73□□□□□ -0.53
KDM3A-213ENST00000488971 REM2Q8IYK8 340 aaPredicted RBP11.69□□□□□ -0.54
KDM3A-213ENST00000488971 SPDYE2BA6NHP3 402 aa11.59□□□□□ -0.55
KDM3A-213ENST00000488971 SPDYE6P0CI01 402 aa11.59□□□□□ -0.55
KDM3A-213ENST00000488971 SPDYE2Q495Y8 402 aa11.59□□□□□ -0.55
KDM3A-213ENST00000488971 CSRNP3Q8WYN3 585 aa11.59□□□□□ -0.55
KDM3A-213ENST00000488971 PITPNM1O00562 1244 aa11.56□□□□□ -0.56
KDM3A-213ENST00000488971 MKRN4PQ13434 485 aaPredicted RBP11.56□□□□□ -0.56
KDM3A-213ENST00000488971 EHMT2Q96KQ7 1210 aa11.53□□□□□ -0.56
KDM3A-213ENST00000488971 PIP4P2Q8N4L2 257 aa11.51□□□□□ -0.57
KDM3A-213ENST00000488971 ZNF692Q9BU19 519 aaPredicted RBP11.49□□□□□ -0.57
KDM3A-213ENST00000488971 FXR2P51116 673 aaKnown RBP eCLIP11.43□□□□□ -0.58
KDM3A-213ENST00000488971 CLEC11AQ9Y240 323 aa11.42□□□□□ -0.58
KDM3A-213ENST00000488971 SPDYE1Q8NFV5 336 aaPredicted RBP11.41□□□□□ -0.58
KDM3A-213ENST00000488971 SSUH2Q9Y2M2 353 aa11.4□□□□□ -0.58
KDM3A-213ENST00000488971 HAX1O00165 279 aa11.35□□□□□ -0.59
KDM3A-213ENST00000488971 SP7Q8TDD2 431 aaPredicted RBP11.32□□□□□ -0.6
KDM3A-213ENST00000488971 PABPN1Q86U42 306 aaKnown RBP eCLIP11.31□□□□□ -0.6
KDM3A-213ENST00000488971 PRKAR2AP13861 404 aaKnown RBP11.29□□□□□ -0.6
KDM3A-213ENST00000488971 PRR29P0C7W0 189 aa11.22□□□□□ -0.61
KDM3A-213ENST00000488971 CHADLQ6NUI6 762 aa11.16□□□□□ -0.62
KDM3A-213ENST00000488971 EVX2Q03828 476 aa11.13□□□□□ -0.63
KDM3A-213ENST00000488971 SPDYE4A6NLX3 237 aa11.09□□□□□ -0.63
KDM3A-213ENST00000488971 C19orf67A6NJJ6 358 aa11.07□□□□□ -0.64
KDM3A-213ENST00000488971 STAG3Q9UJ98 1225 aa11.01□□□□□ -0.65
KDM3A-213ENST00000488971 FARP1Q9Y4F1 1045 aaPredicted RBP10.99□□□□□ -0.65
KDM3A-213ENST00000488971 CD44P16070 742 aaKnown RBP10.93□□□□□ -0.66
KDM3A-213ENST00000488971 GABBR2O75899 941 aa10.92□□□□□ -0.66
KDM3A-213ENST00000488971 CREBZFQ9NS37 354 aa10.9□□□□□ -0.66
KDM3A-213ENST00000488971 ZRANB1Q9UGI0 708 aa10.79□□□□□ -0.68
KDM3A-213ENST00000488971 NPM1P06748 294 aaKnown RBP eCLIP10.76□□□□□ -0.69
KDM3A-213ENST00000488971 CLCN6P51797 869 aa10.76□□□□□ -0.69
KDM3A-213ENST00000488971 PAK3O75914 559 aaPredicted RBP10.75□□□□□ -0.69
KDM3A-213ENST00000488971 PROM2Q8N271 834 aa10.73□□□□□ -0.69
KDM3A-213ENST00000488971 ZNF579Q8NAF0 562 aaKnown RBP10.73□□□□□ -0.69
KDM3A-213ENST00000488971 DCBLD2Q96PD2 775 aa10.69□□□□□ -0.7
KDM3A-213ENST00000488971 MNX1P50219 401 aaPredicted RBP10.67□□□□□ -0.7
KDM3A-213ENST00000488971 POTEIP0CG38 1075 aa10.65□□□□□ -0.7
KDM3A-213ENST00000488971 LHX8Q68G74 356 aa10.64□□□□□ -0.71
KDM3A-213ENST00000488971 PHF12Q96QT6 1004 aa10.63□□□□□ -0.71
KDM3A-213ENST00000488971 PLEKHG5O94827 1062 aa10.62□□□□□ -0.71
KDM3A-213ENST00000488971 GALR2O43603 387 aaPredicted RBP10.61□□□□□ -0.71
KDM3A-213ENST00000488971 MIER1Q8N108 512 aa10.61□□□□□ -0.71
KDM3A-213ENST00000488971 FKBP8Q14318 412 aa10.57□□□□□ -0.72
KDM3A-213ENST00000488971 TSPYL2Q9H2G4 693 aaPredicted RBP10.56□□□□□ -0.72
KDM3A-213ENST00000488971 PLCD3Q8N3E9 789 aa10.54□□□□□ -0.72
KDM3A-213ENST00000488971 MS4A3Q96HJ5 214 aa10.48□□□□□ -0.73
KDM3A-213ENST00000488971 CCDC61Q9Y6R9 512 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms