RNA–Protein interactions for RNA: ENST00000512617.6

PVT1-202, Transcript of Pvt1 oncogene, humanhuman

TSL 3

Gene PVT1, Length 383 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-202ENST00000512617 CHIC1Q5VXU3 224 aa8.2□□□□□ -1.1
PVT1-202ENST00000512617 AEBP2Q6ZN18 517 aaPredicted RBP8.07□□□□□ -1.12
PVT1-202ENST00000512617 SLC24A1O60721 1099 aa7.39□□□□□ -1.23
PVT1-202ENST00000512617 EHMT2Q96KQ7 1210 aa7.31□□□□□ -1.24
PVT1-202ENST00000512617 PHF23Q9BUL5 403 aaPredicted RBP7.28□□□□□ -1.24
PVT1-202ENST00000512617 PLPPR3Q6T4P5 718 aa6.98□□□□□ -1.29
PVT1-202ENST00000512617 SENP3Q9H4L4 574 aaPredicted RBP6.93□□□□□ -1.3
PVT1-202ENST00000512617 KCNA4P22459 653 aa6.87□□□□□ -1.31
PVT1-202ENST00000512617 CSRNP3Q8WYN3 585 aa6.85□□□□□ -1.31
PVT1-202ENST00000512617 AMER1Q5JTC6 1135 aaPredicted RBP6.84□□□□□ -1.31
PVT1-202ENST00000512617 RTN4Q9NQC3 1192 aaKnown RBP6.84□□□□□ -1.31
PVT1-202ENST00000512617 SLC4A1APQ9BWU0 796 aaKnown RBP6.68□□□□□ -1.34
PVT1-202ENST00000512617 NCBP3Q53F19 620 aaKnown RBP6.62□□□□□ -1.35
PVT1-202ENST00000512617 ADRA2BP18089 450 aa6.5□□□□□ -1.37
PVT1-202ENST00000512617 DAXXQ9UER7 740 aaPredicted RBP6.49□□□□□ -1.37
PVT1-202ENST00000512617 FOXD1Q16676 465 aa6.43□□□□□ -1.38
PVT1-202ENST00000512617 PRKCSHP14314 528 aaPredicted RBP6.38□□□□□ -1.39
PVT1-202ENST00000512617 BCANQ96GW7 911 aa6.33□□□□□ -1.4
PVT1-202ENST00000512617 ZBTB22O15209 634 aa6.32□□□□□ -1.4
PVT1-202ENST00000512617 TAOK2Q9UL54 1235 aa6.3□□□□□ -1.4
PVT1-202ENST00000512617 ARXQ96QS3 562 aa6.28□□□□□ -1.4
PVT1-202ENST00000512617 PLCB2Q00722 1185 aa6.26□□□□□ -1.41
PVT1-202ENST00000512617 PPP4R3CPQ6ZMV5 832 aa6.24□□□□□ -1.41
PVT1-202ENST00000512617 HAP1P54257 671 aaPredicted RBP6.21□□□□□ -1.42
PVT1-202ENST00000512617 POTEDQ86YR6 584 aa6.21□□□□□ -1.42
PVT1-202ENST00000512617 TPRNQ4KMQ1 711 aa6.2□□□□□ -1.42
PVT1-202ENST00000512617 PPP6R1Q9UPN7 881 aa6.2□□□□□ -1.42
PVT1-202ENST00000512617 FKBP8Q14318 412 aa6.19□□□□□ -1.42
PVT1-202ENST00000512617 TIMELESSQ9UNS1 1208 aa6.19□□□□□ -1.42
PVT1-202ENST00000512617 NPM3O75607 178 aaKnown RBP6.18□□□□□ -1.42
PVT1-202ENST00000512617 TULP1O00294 542 aaPredicted RBP6.15□□□□□ -1.42
PVT1-202ENST00000512617 FOXD4L1Q9NU39 408 aa6.13□□□□□ -1.43
PVT1-202ENST00000512617 HOMEZQ8IX15 550 aa6.12□□□□□ -1.43
PVT1-202ENST00000512617 ERICH6Q7L0X2 663 aa6.09□□□□□ -1.43
PVT1-202ENST00000512617 VSIG10Q8N0Z9 540 aa6.09□□□□□ -1.43
PVT1-202ENST00000512617 RANGAP1P46060 587 aaPredicted RBP6.08□□□□□ -1.44
PVT1-202ENST00000512617 MSH5O43196 834 aa6.05□□□□□ -1.44
PVT1-202ENST00000512617 GTF3C3Q9Y5Q9 886 aa6.05□□□□□ -1.44
PVT1-202ENST00000512617 PIAS4Q8N2W9 510 aaPredicted RBP5.99□□□□□ -1.45
PVT1-202ENST00000512617 DCAF8L2P0C7V8 631 aa5.98□□□□□ -1.45
PVT1-202ENST00000512617 TMEM132AQ24JP5 1023 aa5.91□□□□□ -1.46
PVT1-202ENST00000512617 CNKSR2Q8WXI2 1034 aa5.91□□□□□ -1.46
PVT1-202ENST00000512617 KDM2AQ9Y2K7 1162 aa5.91□□□□□ -1.46
PVT1-202ENST00000512617 C14orf37Q86TY3 774 aa5.9□□□□□ -1.46
PVT1-202ENST00000512617 PODXL2Q9NZ53 605 aa5.9□□□□□ -1.46
PVT1-202ENST00000512617 FBLN2P98095 1184 aa5.86□□□□□ -1.47
PVT1-202ENST00000512617 ATXN8OSP0DMR3 200 aa5.84□□□□□ -1.47
PVT1-202ENST00000512617 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.84□□□□□ -1.47
PVT1-202ENST00000512617 DNAJC5BQ9UF47 199 aa5.83□□□□□ -1.48
PVT1-202ENST00000512617 NBR1Q14596 966 aa5.81□□□□□ -1.48
PVT1-202ENST00000512617 PELP1Q8IZL8 1130 aaKnown RBP5.8□□□□□ -1.48
PVT1-202ENST00000512617 PAXIP1Q6ZW49 1069 aaPredicted RBP5.79□□□□□ -1.48
PVT1-202ENST00000512617 BBXQ8WY36 941 aaPredicted RBP5.78□□□□□ -1.48
PVT1-202ENST00000512617 CFAP44Q96MT7 982 aa5.78□□□□□ -1.48
PVT1-202ENST00000512617 TTBK1Q5TCY1 1321 aaPredicted RBP5.77□□□□□ -1.49
PVT1-202ENST00000512617 APLP2Q06481 763 aa5.77□□□□□ -1.49
PVT1-202ENST00000512617 NPM2Q86SE8 214 aaKnown RBP5.77□□□□□ -1.49
PVT1-202ENST00000512617 FBXO3Q9UK99 471 aa5.77□□□□□ -1.49
PVT1-202ENST00000512617 MYT1Q01538 1121 aa5.74□□□□□ -1.49
PVT1-202ENST00000512617 KLHL34Q8N239 644 aa5.74□□□□□ -1.49
PVT1-202ENST00000512617 SCAF1Q9H7N4 1312 aaKnown RBP5.73□□□□□ -1.49
PVT1-202ENST00000512617 SUPT5HO00267 1087 aaKnown RBP5.72□□□□□ -1.49
PVT1-202ENST00000512617 MYCNP04198 464 aaPredicted RBP5.71□□□□□ -1.5
PVT1-202ENST00000512617 PKD2Q13563 968 aa5.7□□□□□ -1.5
PVT1-202ENST00000512617 TSHZ2Q9NRE2 1034 aa5.7□□□□□ -1.5
PVT1-202ENST00000512617 SPRYD3Q8NCJ5 442 aa5.68□□□□□ -1.5
PVT1-202ENST00000512617 VASPP50552 380 aaPredicted RBP5.67□□□□□ -1.5
PVT1-202ENST00000512617 SLC4A2P04920 1241 aa5.65□□□□□ -1.5
PVT1-202ENST00000512617 NPM1P06748 294 aaKnown RBP eCLIP5.65□□□□□ -1.5
PVT1-202ENST00000512617 TRIM26Q12899 539 aaPredicted RBP5.65□□□□□ -1.5
PVT1-202ENST00000512617 IFNLR1Q8IU57 520 aaPredicted RBP5.63□□□□□ -1.51
PVT1-202ENST00000512617 UBTFP17480 764 aaKnown RBP5.62□□□□□ -1.51
PVT1-202ENST00000512617 RNF216Q9NWF9 866 aaPredicted RBP5.61□□□□□ -1.51
PVT1-202ENST00000512617 DNAJC5Q9H3Z4 198 aa5.6□□□□□ -1.51
PVT1-202ENST00000512617 ECM2O94769 699 aaPredicted RBP5.59□□□□□ -1.51
PVT1-202ENST00000512617 HRCP23327 699 aa5.55□□□□□ -1.52
PVT1-202ENST00000512617 SPDYE4A6NLX3 237 aa5.52□□□□□ -1.53
PVT1-202ENST00000512617 RGL2O15211 777 aa5.49□□□□□ -1.53
PVT1-202ENST00000512617 CCDC9Q9Y3X0 531 aaKnown RBP5.49□□□□□ -1.53
PVT1-202ENST00000512617 DMRT2Q9Y5R5 561 aa5.49□□□□□ -1.53
PVT1-202ENST00000512617 BRPF1P55201 1214 aaPredicted RBP5.48□□□□□ -1.53
PVT1-202ENST00000512617 ATF5Q9Y2D1 282 aaPredicted RBP5.48□□□□□ -1.53
PVT1-202ENST00000512617 CHGAP10645 457 aaKnown RBP5.47□□□□□ -1.53
PVT1-202ENST00000512617 MAPK8IP2Q13387 824 aaPredicted RBP5.47□□□□□ -1.53
PVT1-202ENST00000512617 PROM2Q8N271 834 aa5.47□□□□□ -1.53
PVT1-202ENST00000512617 SPOCK2Q92563 424 aa5.47□□□□□ -1.53
PVT1-202ENST00000512617 NISCHQ9Y2I1 1504 aa5.47□□□□□ -1.53
PVT1-202ENST00000512617 EIF5BO60841 1220 aaKnown RBP5.46□□□□□ -1.54
PVT1-202ENST00000512617 ZBTB7CA1YPR0 619 aa5.45□□□□□ -1.54
PVT1-202ENST00000512617 ARID3AQ99856 593 aa5.43□□□□□ -1.54
PVT1-202ENST00000512617 RSPH6AQ9H0K4 717 aa5.43□□□□□ -1.54
PVT1-202ENST00000512617 NEUROD2Q15784 382 aa5.42□□□□□ -1.54
PVT1-202ENST00000512617 ZMYND15Q9H091 742 aa5.42□□□□□ -1.54
PVT1-202ENST00000512617 HOXD11P31277 338 aaPredicted RBP5.4□□□□□ -1.54
PVT1-202ENST00000512617 LMOD2Q6P5Q4 547 aa5.4□□□□□ -1.54
PVT1-202ENST00000512617 PDIA4P13667 645 aaKnown RBP5.39□□□□□ -1.55
PVT1-202ENST00000512617 LOC105371045A0A1W2PR82 267 aa5.38□□□□□ -1.55
PVT1-202ENST00000512617 TRHP20396 242 aaPredicted RBP5.37□□□□□ -1.55
PVT1-202ENST00000512617 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.36□□□□□ -1.55
PVT1-202ENST00000512617 P3H3Q8IVL6 736 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms