RNA–Protein interactions for RNA: ENST00000409556.5

KDM3A-203, Transcript of lysine demethylase 3A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene KDM3A, Length 4,928 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-203ENST00000409556 NISCHQ9Y2I1 1504 aa27.52■■■□□ 2
KDM3A-203ENST00000409556 DCAF8L2P0C7V8 631 aa27.33■■□□□ 1.97
KDM3A-203ENST00000409556 SUPT5HO00267 1087 aaKnown RBP25.5■■□□□ 1.67
KDM3A-203ENST00000409556 SHROOM4Q9ULL8 1493 aa25.45■■□□□ 1.66
KDM3A-203ENST00000409556 EHMT2Q96KQ7 1210 aa24.29■■□□□ 1.48
KDM3A-203ENST00000409556 FAM9AQ8IZU1 332 aaPredicted RBP23.94■■□□□ 1.42
KDM3A-203ENST00000409556 APLP2Q06481 763 aa23.92■■□□□ 1.42
KDM3A-203ENST00000409556 ABCC9O60706 1549 aa23.87■■□□□ 1.41
KDM3A-203ENST00000409556 TRIM41Q8WV44 630 aa23.77■■□□□ 1.4
KDM3A-203ENST00000409556 RANGAP1P46060 587 aaPredicted RBP23.52■■□□□ 1.36
KDM3A-203ENST00000409556 PABPN1Q86U42 306 aaKnown RBP eCLIP23.43■■□□□ 1.34
KDM3A-203ENST00000409556 UBTFP17480 764 aaKnown RBP23.39■■□□□ 1.33
KDM3A-203ENST00000409556 TTBK1Q5TCY1 1321 aaPredicted RBP23.35■■□□□ 1.33
KDM3A-203ENST00000409556 ATP1B4Q9UN42 357 aaPredicted RBP23.33■■□□□ 1.33
KDM3A-203ENST00000409556 PCGF6Q9BYE7 350 aa22.98■■□□□ 1.27
KDM3A-203ENST00000409556 CCDC180Q9P1Z9 1646 aa22.94■■□□□ 1.26
KDM3A-203ENST00000409556 CHIC1Q5VXU3 224 aa22.81■■□□□ 1.24
KDM3A-203ENST00000409556 ZCCHC6Q5VYS8 1495 aaKnown RBP22.77■■□□□ 1.24
KDM3A-203ENST00000409556 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.75■■□□□ 1.23
KDM3A-203ENST00000409556 HNRNPUL2Q1KMD3 747 aaKnown RBP22.75■■□□□ 1.23
KDM3A-203ENST00000409556 CCER1Q8TC90 406 aaPredicted RBP22.69■■□□□ 1.22
KDM3A-203ENST00000409556 SCRIBQ14160 1630 aa22.68■■□□□ 1.22
KDM3A-203ENST00000409556 PPARGC1BQ86YN6 1023 aaKnown RBP22.61■■□□□ 1.21
KDM3A-203ENST00000409556 ZEB1P37275 1124 aaPredicted RBP22.55■■□□□ 1.2
KDM3A-203ENST00000409556 LOC105371045A0A1W2PR82 267 aa22.55■■□□□ 1.2
KDM3A-203ENST00000409556 MYT1LQ9UL68 1186 aa22.54■■□□□ 1.2
KDM3A-203ENST00000409556 RB1CC1Q8TDY2 1594 aa22.48■■□□□ 1.19
KDM3A-203ENST00000409556 ITGAEP38570 1179 aa22.4■■□□□ 1.18
KDM3A-203ENST00000409556 FBLN2P98095 1184 aa22.36■■□□□ 1.17
KDM3A-203ENST00000409556 TRIM26Q12899 539 aaPredicted RBP22.34■■□□□ 1.17
KDM3A-203ENST00000409556 PELP1Q8IZL8 1130 aaKnown RBP22.3■■□□□ 1.16
KDM3A-203ENST00000409556 NACADO15069 1562 aa22.29■■□□□ 1.16
KDM3A-203ENST00000409556 CSRNP3Q8WYN3 585 aa22.08■■□□□ 1.12
KDM3A-203ENST00000409556 FAM50AQ14320 339 aaKnown RBP22.02■■□□□ 1.12
KDM3A-203ENST00000409556 CENPBP07199 599 aaPredicted RBP21.93■■□□□ 1.1
KDM3A-203ENST00000409556 P3H3Q8IVL6 736 aa21.92■■□□□ 1.1
KDM3A-203ENST00000409556 DCAF1Q9Y4B6 1507 aa21.9■■□□□ 1.1
KDM3A-203ENST00000409556 POLR3GLQ9BT43 218 aa21.83■■□□□ 1.09
KDM3A-203ENST00000409556 TRIM52Q96A61 297 aa21.82■■□□□ 1.08
KDM3A-203ENST00000409556 RSF1Q96T23 1441 aaPredicted RBP21.82■■□□□ 1.08
KDM3A-203ENST00000409556 ARID3CA6NKF2 412 aa21.8■■□□□ 1.08
KDM3A-203ENST00000409556 BAZ1BQ9UIG0 1483 aaKnown RBP21.79■■□□□ 1.08
KDM3A-203ENST00000409556 CDK11AQ9UQ88 783 aaPredicted RBP21.76■■□□□ 1.07
KDM3A-203ENST00000409556 BAZ1AQ9NRL2 1556 aaPredicted RBP21.66■■□□□ 1.06
KDM3A-203ENST00000409556 NPM1P06748 294 aaKnown RBP eCLIP21.65■■□□□ 1.06
KDM3A-203ENST00000409556 CHMP7Q8WUX9 453 aaPredicted RBP21.65■■□□□ 1.06
KDM3A-203ENST00000409556 YTHDC1Q96MU7 727 aaKnown RBP21.63■■□□□ 1.05
KDM3A-203ENST00000409556 NEFLP07196 543 aa21.6■■□□□ 1.05
KDM3A-203ENST00000409556 HRCP23327 699 aa21.6■■□□□ 1.05
KDM3A-203ENST00000409556 ZNF777Q9ULD5 760 aaPredicted RBP21.6■■□□□ 1.05
KDM3A-203ENST00000409556 SLC4A1APQ9BWU0 796 aaKnown RBP21.55■■□□□ 1.04
KDM3A-203ENST00000409556 CECR2Q9BXF3 1484 aa21.54■■□□□ 1.04
KDM3A-203ENST00000409556 NEUROD1Q13562 356 aa21.53■■□□□ 1.04
KDM3A-203ENST00000409556 CNGB1Q14028 1251 aaPredicted RBP21.51■■□□□ 1.03
KDM3A-203ENST00000409556 ERCC6Q03468 1493 aa21.49■■□□□ 1.03
KDM3A-203ENST00000409556 WRNQ14191 1432 aaPredicted RBP eCLIP21.47■■□□□ 1.03
KDM3A-203ENST00000409556 MYO15BQ96JP2 1530 aa21.43■■□□□ 1.02
KDM3A-203ENST00000409556 ZNF326Q5BKZ1 582 aaKnown RBP21.42■■□□□ 1.02
KDM3A-203ENST00000409556 EEA1Q15075 1411 aa21.38■■□□□ 1.01
KDM3A-203ENST00000409556 ESF1Q9H501 851 aaKnown RBP21.38■■□□□ 1.01
KDM3A-203ENST00000409556 KIF27Q86VH2 1401 aa21.33■■□□□ 1
KDM3A-203ENST00000409556 BCANQ96GW7 911 aa21.29■■□□□ 1
KDM3A-203ENST00000409556 SMARCA2P51531 1590 aa21.29■■□□□ 1
KDM3A-203ENST00000409556 CLIP1P30622 1438 aa21.27■■□□□ 1
KDM3A-203ENST00000409556 MTUS2Q5JR59 1369 aa21.26■□□□□ 0.99
KDM3A-203ENST00000409556 MROH2BQ7Z745 1585 aa21.26■□□□□ 0.99
KDM3A-203ENST00000409556 GOLGA3Q08378 1498 aa21.21■□□□□ 0.99
KDM3A-203ENST00000409556 ERICH6Q7L0X2 663 aa21.19■□□□□ 0.98
KDM3A-203ENST00000409556 TSPY4P0CV99 314 aa21.19■□□□□ 0.98
KDM3A-203ENST00000409556 TSPY10P0CW01 314 aa21.19■□□□□ 0.98
KDM3A-203ENST00000409556 PDS5BQ9NTI5 1447 aa21.16■□□□□ 0.98
KDM3A-203ENST00000409556 DIEXFQ68CQ4 756 aaKnown RBP21.15■□□□□ 0.98
KDM3A-203ENST00000409556 PLEKHD1A6NEE1 506 aa21.15■□□□□ 0.98
KDM3A-203ENST00000409556 STAG3Q9UJ98 1225 aa21.13■□□□□ 0.97
KDM3A-203ENST00000409556 CHIC2Q9UKJ5 165 aa21.13■□□□□ 0.97
KDM3A-203ENST00000409556 KCNH8Q96L42 1107 aa21.11■□□□□ 0.97
KDM3A-203ENST00000409556 CCDC88BA6NC98 1476 aa21.11■□□□□ 0.97
KDM3A-203ENST00000409556 CHGAP10645 457 aaKnown RBP21.11■□□□□ 0.97
KDM3A-203ENST00000409556 CEP164Q9UPV0 1460 aa21.09■□□□□ 0.97
KDM3A-203ENST00000409556 PLPPR3Q6T4P5 718 aa21.07■□□□□ 0.96
KDM3A-203ENST00000409556 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.06■□□□□ 0.965e-7■■□□□ 12.9
KDM3A-203ENST00000409556 CUX2O14529 1486 aa21.06■□□□□ 0.96
KDM3A-203ENST00000409556 CEP162Q5TB80 1403 aa21.04■□□□□ 0.96
KDM3A-203ENST00000409556 ANP32CO43423 234 aa21.01■□□□□ 0.95
KDM3A-203ENST00000409556 TONSLQ96HA7 1378 aa21■□□□□ 0.95
KDM3A-203ENST00000409556 CARMIL1Q5VZK9 1371 aa21■□□□□ 0.95
KDM3A-203ENST00000409556 TNIKQ9UKE5 1360 aa20.99■□□□□ 0.95
KDM3A-203ENST00000409556 CADPSQ9ULU8 1353 aa20.97■□□□□ 0.95
KDM3A-203ENST00000409556 ATAD2BQ9ULI0 1458 aa20.97■□□□□ 0.95
KDM3A-203ENST00000409556 TOP2AP11388 1531 aaKnown RBP20.96■□□□□ 0.95
KDM3A-203ENST00000409556 ZNF316A6NFI3 1004 aaPredicted RBP20.92■□□□□ 0.94
KDM3A-203ENST00000409556 WIZO95785 1651 aa20.91■□□□□ 0.94
KDM3A-203ENST00000409556 SOGA1O94964 1423 aa20.91■□□□□ 0.94
KDM3A-203ENST00000409556 CFDP1Q9UEE9 299 aaPredicted RBP20.9■□□□□ 0.94
KDM3A-203ENST00000409556 SMARCA4P51532 1647 aa20.87■□□□□ 0.93
KDM3A-203ENST00000409556 EIF4G1Q04637 1599 aaKnown RBP20.87■□□□□ 0.93
KDM3A-203ENST00000409556 TDRD9Q8NDG6 1382 aaKnown RBP20.86■□□□□ 0.93
KDM3A-203ENST00000409556 RRP7BPQ9NSQ0 103 aa20.85■□□□□ 0.93
KDM3A-203ENST00000409556 NEFMP07197 916 aa20.85■□□□□ 0.93
KDM3A-203ENST00000409556 ABCC8Q09428 1581 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms