RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NISCHQ9Y2I1 1504 aa41.48■■■■■ 4.23
CTCF-202ENST00000401394 SHROOM4Q9ULL8 1493 aa36.91■■■■□ 3.5
CTCF-202ENST00000401394 SUPT5HO00267 1087 aaKnown RBP36.42■■■■□ 3.42
CTCF-202ENST00000401394 MYO15BQ96JP2 1530 aa35.43■■■■□ 3.26
CTCF-202ENST00000401394 DCAF8L2P0C7V8 631 aa35.43■■■■□ 3.26
CTCF-202ENST00000401394 CCDC180Q9P1Z9 1646 aa35.4■■■■□ 3.26
CTCF-202ENST00000401394 CHIC1Q5VXU3 224 aa35.28■■■■□ 3.24
CTCF-202ENST00000401394 PCGF6Q9BYE7 350 aa35.14■■■■□ 3.22
CTCF-202ENST00000401394 HRCP23327 699 aa35.13■■■■□ 3.21
CTCF-202ENST00000401394 ZCCHC6Q5VYS8 1495 aaKnown RBP35.12■■■■□ 3.21
CTCF-202ENST00000401394 PPARGC1BQ86YN6 1023 aaKnown RBP35.01■■■■□ 3.2
CTCF-202ENST00000401394 LOC105371045A0A1W2PR82 267 aa34.74■■■■□ 3.15
CTCF-202ENST00000401394 EHMT2Q96KQ7 1210 aa33.96■■■■□ 3.03
CTCF-202ENST00000401394 DCAF1Q9Y4B6 1507 aa33.91■■■■□ 3.02
CTCF-202ENST00000401394 FAM9AQ8IZU1 332 aaPredicted RBP33.81■■■■□ 3
CTCF-202ENST00000401394 TRIM26Q12899 539 aaPredicted RBP33.8■■■■□ 3
CTCF-202ENST00000401394 TRIM41Q8WV44 630 aa33.48■■■□□ 2.95
CTCF-202ENST00000401394 RSF1Q96T23 1441 aaPredicted RBP33.3■■■□□ 2.92
CTCF-202ENST00000401394 SCRIBQ14160 1630 aa33.24■■■□□ 2.91
CTCF-202ENST00000401394 ABCC9O60706 1549 aa33.2■■■□□ 2.9
CTCF-202ENST00000401394 RB1CC1Q8TDY2 1594 aa33.11■■■□□ 2.89
CTCF-202ENST00000401394 SCAF1Q9H7N4 1312 aaKnown RBP33.04■■■□□ 2.88
CTCF-202ENST00000401394 ZEB1P37275 1124 aaPredicted RBP32.95■■■□□ 2.87
CTCF-202ENST00000401394 TTBK1Q5TCY1 1321 aaPredicted RBP32.91■■■□□ 2.86
CTCF-202ENST00000401394 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.89■■■□□ 2.86
CTCF-202ENST00000401394 NACADO15069 1562 aa32.85■■■□□ 2.85
CTCF-202ENST00000401394 CECR2Q9BXF3 1484 aa32.81■■■□□ 2.84
CTCF-202ENST00000401394 CCER1Q8TC90 406 aaPredicted RBP32.58■■■□□ 2.81
CTCF-202ENST00000401394 MROH2BQ7Z745 1585 aa32.57■■■□□ 2.81
CTCF-202ENST00000401394 NEUROD1Q13562 356 aa32.44■■■□□ 2.78
CTCF-202ENST00000401394 WIZO95785 1651 aa32.42■■■□□ 2.78
CTCF-202ENST00000401394 ACIN1Q9UKV3 1341 aaKnown RBP32.25■■■□□ 2.75
CTCF-202ENST00000401394 DIEXFQ68CQ4 756 aaKnown RBP32.2■■■□□ 2.75
CTCF-202ENST00000401394 PELP1Q8IZL8 1130 aaKnown RBP32.16■■■□□ 2.74
CTCF-202ENST00000401394 GTF3C3Q9Y5Q9 886 aa32.14■■■□□ 2.74
CTCF-202ENST00000401394 ABCC8Q09428 1581 aa32.13■■■□□ 2.73
CTCF-202ENST00000401394 CCDC88BA6NC98 1476 aa32.08■■■□□ 2.73
CTCF-202ENST00000401394 SOGA1O94964 1423 aa32■■■□□ 2.71
CTCF-202ENST00000401394 YTHDC1Q96MU7 727 aaKnown RBP31.96■■■□□ 2.71
CTCF-202ENST00000401394 UBTFP17480 764 aaKnown RBP31.94■■■□□ 2.7
CTCF-202ENST00000401394 RUSC2Q8N2Y8 1516 aa31.9■■■□□ 2.7
CTCF-202ENST00000401394 CEP162Q5TB80 1403 aa31.9■■■□□ 2.7
CTCF-202ENST00000401394 EIF4G1Q04637 1599 aaKnown RBP31.85■■■□□ 2.69
CTCF-202ENST00000401394 UNC13AQ9UPW8 1703 aa31.84■■■□□ 2.69
CTCF-202ENST00000401394 BAZ1AQ9NRL2 1556 aaPredicted RBP31.84■■■□□ 2.69
CTCF-202ENST00000401394 HNRNPUL2Q1KMD3 747 aaKnown RBP31.79■■■□□ 2.68
CTCF-202ENST00000401394 RANGAP1P46060 587 aaPredicted RBP31.77■■■□□ 2.68
CTCF-202ENST00000401394 CENPBP07199 599 aaPredicted RBP31.75■■■□□ 2.67
CTCF-202ENST00000401394 CSRNP3Q8WYN3 585 aa31.71■■■□□ 2.67
CTCF-202ENST00000401394 ZNF316A6NFI3 1004 aaPredicted RBP31.65■■■□□ 2.66
CTCF-202ENST00000401394 WRNQ14191 1432 aaPredicted RBP eCLIP31.64■■■□□ 2.65
CTCF-202ENST00000401394 MIER1Q8N108 512 aa31.61■■■□□ 2.65
CTCF-202ENST00000401394 TNIKQ9UKE5 1360 aa31.58■■■□□ 2.65
CTCF-202ENST00000401394 PABPN1Q86U42 306 aaKnown RBP eCLIP31.58■■■□□ 2.65
CTCF-202ENST00000401394 SMARCA2P51531 1590 aa31.54■■■□□ 2.64
CTCF-202ENST00000401394 TOP2AP11388 1531 aaKnown RBP31.53■■■□□ 2.64
CTCF-202ENST00000401394 BICRAQ9NZM4 1560 aa31.46■■■□□ 2.63
CTCF-202ENST00000401394 SMARCA4P51532 1647 aa31.43■■■□□ 2.62
CTCF-202ENST00000401394 GOLGA3Q08378 1498 aa31.27■■■□□ 2.6
CTCF-202ENST00000401394 CLIP1P30622 1438 aa31.16■■■□□ 2.58
CTCF-202ENST00000401394 EEA1Q15075 1411 aa31.11■■■□□ 2.57
CTCF-202ENST00000401394 APLP2Q06481 763 aa31.09■■■□□ 2.57
CTCF-202ENST00000401394 SYNJ1O43426 1573 aa31.08■■■□□ 2.57
CTCF-202ENST00000401394 RAPGEF2Q9Y4G8 1499 aa31.05■■■□□ 2.56
CTCF-202ENST00000401394 CEP164Q9UPV0 1460 aa30.98■■■□□ 2.55
CTCF-202ENST00000401394 VPS8Q8N3P4 1428 aa30.95■■■□□ 2.54
CTCF-202ENST00000401394 PEG3Q9GZU2 1588 aa30.94■■■□□ 2.54
CTCF-202ENST00000401394 KANK4Q5T7N3 995 aaPredicted RBP30.93■■■□□ 2.54
CTCF-202ENST00000401394 ITGAEP38570 1179 aa30.87■■■□□ 2.53
CTCF-202ENST00000401394 KIF21BO75037 1637 aa30.8■■■□□ 2.52
CTCF-202ENST00000401394 KCNH8Q96L42 1107 aa30.77■■■□□ 2.52
CTCF-202ENST00000401394 ATAD2BQ9ULI0 1458 aa30.76■■■□□ 2.52
CTCF-202ENST00000401394 DHX57Q6P158 1386 aaKnown RBP30.76■■■□□ 2.51
CTCF-202ENST00000401394 SUPT16HQ9Y5B9 1047 aaKnown RBP30.68■■■□□ 2.5
CTCF-202ENST00000401394 BAZ1BQ9UIG0 1483 aaKnown RBP30.65■■■□□ 2.5
CTCF-202ENST00000401394 ARAP1Q96P48 1450 aa30.54■■■□□ 2.48
CTCF-202ENST00000401394 BCANQ96GW7 911 aa30.5■■■□□ 2.47
CTCF-202ENST00000401394 HIRIP3Q9BW71 556 aaPredicted RBP30.44■■■□□ 2.46
CTCF-202ENST00000401394 MYT1Q01538 1121 aa30.42■■■□□ 2.46
CTCF-202ENST00000401394 TSHZ2Q9NRE2 1034 aa30.36■■■□□ 2.45
CTCF-202ENST00000401394 PRXQ9BXM0 1461 aa30.35■■■□□ 2.45
CTCF-202ENST00000401394 SIN3AQ96ST3 1273 aa30.35■■■□□ 2.45
CTCF-202ENST00000401394 TOP2BQ02880 1626 aa30.34■■■□□ 2.45
CTCF-202ENST00000401394 NCAPD3P42695 1498 aa30.34■■■□□ 2.45
CTCF-202ENST00000401394 HMGXB3Q12766 1538 aa30.33■■■□□ 2.45
CTCF-202ENST00000401394 DDX10Q13206 875 aaKnown RBP30.3■■■□□ 2.44
CTCF-202ENST00000401394 CLSPNQ9HAW4 1339 aa30.3■■■□□ 2.44
CTCF-202ENST00000401394 CCNB3Q8WWL7 1395 aa30.28■■■□□ 2.44
CTCF-202ENST00000401394 P3H3Q8IVL6 736 aa30.26■■■□□ 2.43
CTCF-202ENST00000401394 RRBP1Q9P2E9 1410 aaKnown RBP30.24■■■□□ 2.43
CTCF-202ENST00000401394 ATP1B4Q9UN42 357 aaPredicted RBP30.24■■■□□ 2.43
CTCF-202ENST00000401394 RAB3GAP2Q9H2M9 1393 aa30.23■■■□□ 2.43
CTCF-202ENST00000401394 ARHGAP35Q9NRY4 1499 aa30.19■■■□□ 2.42
CTCF-202ENST00000401394 CUX1P39880 1505 aa30.19■■■□□ 2.42
CTCF-202ENST00000401394 FAM50AQ14320 339 aaKnown RBP30.18■■■□□ 2.42
CTCF-202ENST00000401394 FKBP8Q14318 412 aa30.14■■■□□ 2.41
CTCF-202ENST00000401394 ERICH3Q5RHP9 1530 aa30.11■■■□□ 2.41
CTCF-202ENST00000401394 TRIM52Q96A61 297 aa30.1■■■□□ 2.41
CTCF-202ENST00000401394 KIF27Q86VH2 1401 aa30.1■■■□□ 2.41
CTCF-202ENST00000401394 MAPKBP1O60336 1514 aa30.08■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms