RNA–Protein interactions for RNA: ENST00000312912.9

KDM3A-201, Transcript of lysine demethylase 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KDM3A, Length 4,886 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-201ENST00000312912 DCAF8L2P0C7V8 631 aa26.13■■□□□ 1.77
KDM3A-201ENST00000312912 NISCHQ9Y2I1 1504 aa25.47■■□□□ 1.67
KDM3A-201ENST00000312912 SUPT5HO00267 1087 aaKnown RBP25.19■■□□□ 1.62
KDM3A-201ENST00000312912 PELP1Q8IZL8 1130 aaKnown RBP24.93■■□□□ 1.58
KDM3A-201ENST00000312912 MYT1Q01538 1121 aa24.83■■□□□ 1.57
KDM3A-201ENST00000312912 SHROOM4Q9ULL8 1493 aa24.61■■□□□ 1.53
KDM3A-201ENST00000312912 EHMT2Q96KQ7 1210 aa24.08■■□□□ 1.45
KDM3A-201ENST00000312912 APLP2Q06481 763 aa23.88■■□□□ 1.41
KDM3A-201ENST00000312912 PCGF6Q9BYE7 350 aa23.76■■□□□ 1.39
KDM3A-201ENST00000312912 FAM9AQ8IZU1 332 aaPredicted RBP23.68■■□□□ 1.38
KDM3A-201ENST00000312912 CENPBP07199 599 aaPredicted RBP23.59■■□□□ 1.37
KDM3A-201ENST00000312912 ZEB1P37275 1124 aaPredicted RBP23.54■■□□□ 1.36
KDM3A-201ENST00000312912 TRIM41Q8WV44 630 aa23.39■■□□□ 1.33
KDM3A-201ENST00000312912 ERICH6Q7L0X2 663 aa23.36■■□□□ 1.33
KDM3A-201ENST00000312912 TTBK1Q5TCY1 1321 aaPredicted RBP23.33■■□□□ 1.33
KDM3A-201ENST00000312912 CCER1Q8TC90 406 aaPredicted RBP23.26■■□□□ 1.31
KDM3A-201ENST00000312912 UBTFP17480 764 aaKnown RBP23.03■■□□□ 1.28
KDM3A-201ENST00000312912 RANGAP1P46060 587 aaPredicted RBP23.01■■□□□ 1.27
KDM3A-201ENST00000312912 HRCP23327 699 aa22.94■■□□□ 1.26
KDM3A-201ENST00000312912 TRIM26Q12899 539 aaPredicted RBP22.87■■□□□ 1.25
KDM3A-201ENST00000312912 ATP1B4Q9UN42 357 aaPredicted RBP22.82■■□□□ 1.24
KDM3A-201ENST00000312912 NEFLP07196 543 aa22.74■■□□□ 1.23
KDM3A-201ENST00000312912 YTHDC1Q96MU7 727 aaKnown RBP22.64■■□□□ 1.22
KDM3A-201ENST00000312912 CHIC1Q5VXU3 224 aa22.64■■□□□ 1.21
KDM3A-201ENST00000312912 PPARGC1BQ86YN6 1023 aaKnown RBP22.62■■□□□ 1.21
KDM3A-201ENST00000312912 ABCC9O60706 1549 aa22.5■■□□□ 1.19
KDM3A-201ENST00000312912 LOC105371045A0A1W2PR82 267 aa22.49■■□□□ 1.19
KDM3A-201ENST00000312912 HNRNPUL2Q1KMD3 747 aaKnown RBP22.22■■□□□ 1.15
KDM3A-201ENST00000312912 ITGAEP38570 1179 aa22.21■■□□□ 1.15
KDM3A-201ENST00000312912 PABPN1Q86U42 306 aaKnown RBP eCLIP22.12■■□□□ 1.13
KDM3A-201ENST00000312912 GTF3C3Q9Y5Q9 886 aa22.06■■□□□ 1.12
KDM3A-201ENST00000312912 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.04■■□□□ 1.12
KDM3A-201ENST00000312912 DIEXFQ68CQ4 756 aaKnown RBP22.04■■□□□ 1.12
KDM3A-201ENST00000312912 RTL5Q5HYW3 569 aaPredicted RBP21.98■■□□□ 1.11
KDM3A-201ENST00000312912 POLR3GLQ9BT43 218 aa21.95■■□□□ 1.1
KDM3A-201ENST00000312912 DAXXQ9UER7 740 aaPredicted RBP21.95■■□□□ 1.1
KDM3A-201ENST00000312912 ACIN1Q9UKV3 1341 aaKnown RBP21.81■■□□□ 1.08
KDM3A-201ENST00000312912 MYT1LQ9UL68 1186 aa21.78■■□□□ 1.08
KDM3A-201ENST00000312912 CNGB1Q14028 1251 aaPredicted RBP21.7■■□□□ 1.06
KDM3A-201ENST00000312912 FAM50AQ14320 339 aaKnown RBP21.69■■□□□ 1.06
KDM3A-201ENST00000312912 ZNF316A6NFI3 1004 aaPredicted RBP21.57■■□□□ 1.04
KDM3A-201ENST00000312912 TRIM52Q96A61 297 aa21.55■■□□□ 1.04
KDM3A-201ENST00000312912 NEUROD1Q13562 356 aa21.54■■□□□ 1.04
KDM3A-201ENST00000312912 ANP32CO43423 234 aa21.5■■□□□ 1.03
KDM3A-201ENST00000312912 SCAF1Q9H7N4 1312 aaKnown RBP21.47■■□□□ 1.03
KDM3A-201ENST00000312912 GLIPR1L2Q4G1C9 344 aa21.47■■□□□ 1.03
KDM3A-201ENST00000312912 CLSPNQ9HAW4 1339 aa21.46■■□□□ 1.03
KDM3A-201ENST00000312912 EIF5BO60841 1220 aaKnown RBP21.46■■□□□ 1.03
KDM3A-201ENST00000312912 CSRNP3Q8WYN3 585 aa21.46■■□□□ 1.03
KDM3A-201ENST00000312912 SLC4A1APQ9BWU0 796 aaKnown RBP21.41■■□□□ 1.02
KDM3A-201ENST00000312912 FBLN2P98095 1184 aa21.38■■□□□ 1.01
KDM3A-201ENST00000312912 BCANQ96GW7 911 aa21.37■■□□□ 1.01
KDM3A-201ENST00000312912 CDK11AQ9UQ88 783 aaPredicted RBP21.36■■□□□ 1.01
KDM3A-201ENST00000312912 ZNF326Q5BKZ1 582 aaKnown RBP21.24■□□□□ 0.99
KDM3A-201ENST00000312912 CCDC180Q9P1Z9 1646 aa21.23■□□□□ 0.99
KDM3A-201ENST00000312912 BCL11AQ9H165 835 aa21.23■□□□□ 0.99
KDM3A-201ENST00000312912 DCAF1Q9Y4B6 1507 aa21.22■□□□□ 0.99
KDM3A-201ENST00000312912 SCRIBQ14160 1630 aa21.2■□□□□ 0.98
KDM3A-201ENST00000312912 ANP32EQ9BTT0 268 aa21.17■□□□□ 0.98
KDM3A-201ENST00000312912 RB1CC1Q8TDY2 1594 aa21.13■□□□□ 0.97
KDM3A-201ENST00000312912 P3H3Q8IVL6 736 aa21.1■□□□□ 0.97
KDM3A-201ENST00000312912 ZCCHC6Q5VYS8 1495 aaKnown RBP21.05■□□□□ 0.96
KDM3A-201ENST00000312912 ANP32AP39687 249 aaKnown RBP21.03■□□□□ 0.96
KDM3A-201ENST00000312912 ZBTB47Q9UFB7 747 aaPredicted RBP21.01■□□□□ 0.95
KDM3A-201ENST00000312912 TONSLQ96HA7 1378 aa20.96■□□□□ 0.95
KDM3A-201ENST00000312912 NPM1P06748 294 aaKnown RBP eCLIP20.94■□□□□ 0.94
KDM3A-201ENST00000312912 CANXP27824 592 aaKnown RBP20.94■□□□□ 0.94
KDM3A-201ENST00000312912 FKBP8Q14318 412 aa20.92■□□□□ 0.94
KDM3A-201ENST00000312912 ARID3CA6NKF2 412 aa20.88■□□□□ 0.93
KDM3A-201ENST00000312912 NEFMP07197 916 aa20.88■□□□□ 0.93
KDM3A-201ENST00000312912 DDX10Q13206 875 aaKnown RBP20.88■□□□□ 0.93
KDM3A-201ENST00000312912 ZNF777Q9ULD5 760 aaPredicted RBP20.86■□□□□ 0.93
KDM3A-201ENST00000312912 NACADO15069 1562 aa20.86■□□□□ 0.93
KDM3A-201ENST00000312912 HNRNPUQ00839 825 aaKnown RBP eCLIP20.85■□□□□ 0.93
KDM3A-201ENST00000312912 NBR1Q14596 966 aa20.77■□□□□ 0.92
KDM3A-201ENST00000312912 FAM9BQ8IZU0 186 aa20.72■□□□□ 0.91
KDM3A-201ENST00000312912 NPM2Q86SE8 214 aaKnown RBP20.72■□□□□ 0.91
KDM3A-201ENST00000312912 ESF1Q9H501 851 aaKnown RBP20.72■□□□□ 0.91
KDM3A-201ENST00000312912 MIER1Q8N108 512 aa20.68■□□□□ 0.9
KDM3A-201ENST00000312912 CLIP1P30622 1438 aa20.66■□□□□ 0.9
KDM3A-201ENST00000312912 TMC1Q8TDI8 760 aa20.65■□□□□ 0.9
KDM3A-201ENST00000312912 CHMP7Q8WUX9 453 aaPredicted RBP20.65■□□□□ 0.9
KDM3A-201ENST00000312912 EEA1Q15075 1411 aa20.63■□□□□ 0.89
KDM3A-201ENST00000312912 CCDC136Q96JN2 1154 aa20.62■□□□□ 0.89
KDM3A-201ENST00000312912 CHIC2Q9UKJ5 165 aa20.61■□□□□ 0.89
KDM3A-201ENST00000312912 SLC24A1O60721 1099 aa20.6■□□□□ 0.89
KDM3A-201ENST00000312912 UPF2Q9HAU5 1272 aaKnown RBP20.6■□□□□ 0.89
KDM3A-201ENST00000312912 MRS2Q9HD23 443 aa20.59■□□□□ 0.89
KDM3A-201ENST00000312912 MTUS2Q5JR59 1369 aa20.58■□□□□ 0.89
KDM3A-201ENST00000312912 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.55■□□□□ 0.88
KDM3A-201ENST00000312912 TSPY4P0CV99 314 aa20.54■□□□□ 0.88
KDM3A-201ENST00000312912 TSPY10P0CW01 314 aa20.54■□□□□ 0.88
KDM3A-201ENST00000312912 MYO15BQ96JP2 1530 aa20.53■□□□□ 0.88
KDM3A-201ENST00000312912 ANP32BQ92688 251 aaKnown RBP20.53■□□□□ 0.88
KDM3A-201ENST00000312912 RSF1Q96T23 1441 aaPredicted RBP20.52■□□□□ 0.88
KDM3A-201ENST00000312912 SALL2Q9Y467 1007 aaPredicted RBP20.52■□□□□ 0.88
KDM3A-201ENST00000312912 ERCC6Q03468 1493 aa20.52■□□□□ 0.87
KDM3A-201ENST00000312912 EIF4G2P78344 907 aaKnown RBP eCLIP20.52■□□□□ 0.87
KDM3A-201ENST00000312912 HSP90AA1P07900 732 aaKnown RBP20.5■□□□□ 0.87
KDM3A-201ENST00000312912 CHGAP10645 457 aaKnown RBP20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms