RNA–Protein interactions for RNA: ENST00000409064.5

KDM3A-202, Transcript of lysine demethylase 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KDM3A, Length 4,621 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-202ENST00000409064 DCAF8L2P0C7V8 631 aa18.78■□□□□ 0.6
KDM3A-202ENST00000409064 NISCHQ9Y2I1 1504 aa18.05■□□□□ 0.48
KDM3A-202ENST00000409064 SUPT5HO00267 1087 aaKnown RBP17.16■□□□□ 0.34
KDM3A-202ENST00000409064 SHROOM4Q9ULL8 1493 aa17.09■□□□□ 0.33
KDM3A-202ENST00000409064 EHMT2Q96KQ7 1210 aa16.6■□□□□ 0.25
KDM3A-202ENST00000409064 FAM9AQ8IZU1 332 aaPredicted RBP16.25■□□□□ 0.19
KDM3A-202ENST00000409064 APLP2Q06481 763 aa16.12■□□□□ 0.17
KDM3A-202ENST00000409064 ABCC9O60706 1549 aa16.11■□□□□ 0.17
KDM3A-202ENST00000409064 RANGAP1P46060 587 aaPredicted RBP16.09■□□□□ 0.17
KDM3A-202ENST00000409064 PABPN1Q86U42 306 aaKnown RBP eCLIP15.98■□□□□ 0.15
KDM3A-202ENST00000409064 ATP1B4Q9UN42 357 aaPredicted RBP15.95■□□□□ 0.14
KDM3A-202ENST00000409064 TRIM41Q8WV44 630 aa15.89■□□□□ 0.13
KDM3A-202ENST00000409064 TTBK1Q5TCY1 1321 aaPredicted RBP15.88■□□□□ 0.13
KDM3A-202ENST00000409064 UBTFP17480 764 aaKnown RBP15.76■□□□□ 0.11
KDM3A-202ENST00000409064 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.58■□□□□ 0.08
KDM3A-202ENST00000409064 HNRNPUL2Q1KMD3 747 aaKnown RBP15.58■□□□□ 0.08
KDM3A-202ENST00000409064 PCGF6Q9BYE7 350 aa15.57■□□□□ 0.08
KDM3A-202ENST00000409064 MYT1LQ9UL68 1186 aa15.54■□□□□ 0.08
KDM3A-202ENST00000409064 HRCP23327 699 aa15.47■□□□□ 0.07
KDM3A-202ENST00000409064 CHIC1Q5VXU3 224 aa15.42■□□□□ 0.06
KDM3A-202ENST00000409064 FBLN2P98095 1184 aa15.38■□□□□ 0.05
KDM3A-202ENST00000409064 PPARGC1BQ86YN6 1023 aaKnown RBP15.25■□□□□ 0.03
KDM3A-202ENST00000409064 ZCCHC6Q5VYS8 1495 aaKnown RBP15.21■□□□□ 0.03
KDM3A-202ENST00000409064 ITGAEP38570 1179 aa15.18■□□□□ 0.02
KDM3A-202ENST00000409064 ZEB1P37275 1124 aaPredicted RBP15.15■□□□□ 0.02
KDM3A-202ENST00000409064 TRIM26Q12899 539 aaPredicted RBP15.13■□□□□ 0.01
KDM3A-202ENST00000409064 CCER1Q8TC90 406 aaPredicted RBP15.1■□□□□ 0.01
KDM3A-202ENST00000409064 LOC105371045A0A1W2PR82 267 aa15.1■□□□□ 0.01
KDM3A-202ENST00000409064 SCRIBQ14160 1630 aa15.05■□□□□ 0
KDM3A-202ENST00000409064 CCDC180Q9P1Z9 1646 aa15.05■□□□□ -0
KDM3A-202ENST00000409064 MYO15BQ96JP2 1530 aa14.98□□□□□ -0.01
KDM3A-202ENST00000409064 ARID3CA6NKF2 412 aa14.93□□□□□ -0.02
KDM3A-202ENST00000409064 DCAF1Q9Y4B6 1507 aa14.91□□□□□ -0.02
KDM3A-202ENST00000409064 PELP1Q8IZL8 1130 aaKnown RBP14.91□□□□□ -0.02
KDM3A-202ENST00000409064 P3H3Q8IVL6 736 aa14.87□□□□□ -0.03
KDM3A-202ENST00000409064 POLR3GLQ9BT43 218 aa14.86□□□□□ -0.03
KDM3A-202ENST00000409064 NPM1P06748 294 aaKnown RBP eCLIP14.83□□□□□ -0.04
KDM3A-202ENST00000409064 FAM50AQ14320 339 aaKnown RBP14.83□□□□□ -0.04
KDM3A-202ENST00000409064 RB1CC1Q8TDY2 1594 aa14.79□□□□□ -0.04
KDM3A-202ENST00000409064 SLC4A1APQ9BWU0 796 aaKnown RBP14.76□□□□□ -0.05
KDM3A-202ENST00000409064 PLPPR3Q6T4P5 718 aa14.73□□□□□ -0.05
KDM3A-202ENST00000409064 TRIM52Q96A61 297 aa14.72□□□□□ -0.05
KDM3A-202ENST00000409064 CNGB1Q14028 1251 aaPredicted RBP14.72□□□□□ -0.05
KDM3A-202ENST00000409064 CHMP7Q8WUX9 453 aaPredicted RBP14.71□□□□□ -0.06
KDM3A-202ENST00000409064 CENPBP07199 599 aaPredicted RBP14.7□□□□□ -0.06
KDM3A-202ENST00000409064 ZNF777Q9ULD5 760 aaPredicted RBP14.69□□□□□ -0.06
KDM3A-202ENST00000409064 ESF1Q9H501 851 aaKnown RBP14.69□□□□□ -0.06
KDM3A-202ENST00000409064 CSRNP3Q8WYN3 585 aa14.67□□□□□ -0.06
KDM3A-202ENST00000409064 BCANQ96GW7 911 aa14.67□□□□□ -0.06
KDM3A-202ENST00000409064 CDK11AQ9UQ88 783 aaPredicted RBP14.64□□□□□ -0.07
KDM3A-202ENST00000409064 NACADO15069 1562 aa14.56□□□□□ -0.08
KDM3A-202ENST00000409064 ERCC6Q03468 1493 aa14.55□□□□□ -0.08
KDM3A-202ENST00000409064 ZNF326Q5BKZ1 582 aaKnown RBP14.54□□□□□ -0.08
KDM3A-202ENST00000409064 NEUROD1Q13562 356 aa14.47□□□□□ -0.09
KDM3A-202ENST00000409064 STAG3Q9UJ98 1225 aa14.46□□□□□ -0.09
KDM3A-202ENST00000409064 RSF1Q96T23 1441 aaPredicted RBP14.44□□□□□ -0.1
KDM3A-202ENST00000409064 KCNH8Q96L42 1107 aa14.44□□□□□ -0.1
KDM3A-202ENST00000409064 TRHP20396 242 aaPredicted RBP14.43□□□□□ -0.1
KDM3A-202ENST00000409064 BAZ1BQ9UIG0 1483 aaKnown RBP14.43□□□□□ -0.1
KDM3A-202ENST00000409064 CHGAP10645 457 aaKnown RBP14.43□□□□□ -0.1
KDM3A-202ENST00000409064 YTHDC1Q96MU7 727 aaKnown RBP14.43□□□□□ -0.1
KDM3A-202ENST00000409064 DIEXFQ68CQ4 756 aaKnown RBP14.42□□□□□ -0.1
KDM3A-202ENST00000409064 MYT1Q01538 1121 aa14.4□□□□□ -0.1
KDM3A-202ENST00000409064 NEFLP07196 543 aa14.34□□□□□ -0.11
KDM3A-202ENST00000409064 ACIN1Q9UKV3 1341 aaKnown RBP14.32□□□□□ -0.12
KDM3A-202ENST00000409064 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.32□□□□□ -0.125e-7■■□□□ 12.9
KDM3A-202ENST00000409064 SCAF1Q9H7N4 1312 aaKnown RBP14.31□□□□□ -0.12
KDM3A-202ENST00000409064 ARID4BQ4LE39 1312 aaPredicted RBP14.3□□□□□ -0.12
KDM3A-202ENST00000409064 TSPY4P0CV99 314 aa14.29□□□□□ -0.12
KDM3A-202ENST00000409064 TSPY10P0CW01 314 aa14.29□□□□□ -0.12
KDM3A-202ENST00000409064 CHIC2Q9UKJ5 165 aa14.27□□□□□ -0.13
KDM3A-202ENST00000409064 GTF3C3Q9Y5Q9 886 aa14.27□□□□□ -0.13
KDM3A-202ENST00000409064 PLEKHD1A6NEE1 506 aa14.27□□□□□ -0.13
KDM3A-202ENST00000409064 SLC24A1O60721 1099 aa14.26□□□□□ -0.13
KDM3A-202ENST00000409064 CECR2Q9BXF3 1484 aa14.22□□□□□ -0.13
KDM3A-202ENST00000409064 MTUS2Q5JR59 1369 aa14.2□□□□□ -0.14
KDM3A-202ENST00000409064 SENP3Q9H4L4 574 aaPredicted RBP14.2□□□□□ -0.14
KDM3A-202ENST00000409064 ZNF316A6NFI3 1004 aaPredicted RBP14.19□□□□□ -0.14
KDM3A-202ENST00000409064 WRNQ14191 1432 aaPredicted RBP eCLIP14.16□□□□□ -0.14
KDM3A-202ENST00000409064 BAZ1AQ9NRL2 1556 aaPredicted RBP14.15□□□□□ -0.14
KDM3A-202ENST00000409064 PDS5BQ9NTI5 1447 aa14.13□□□□□ -0.15
KDM3A-202ENST00000409064 C14orf37Q86TY3 774 aa14.1□□□□□ -0.15
KDM3A-202ENST00000409064 KIF27Q86VH2 1401 aa14.1□□□□□ -0.15
KDM3A-202ENST00000409064 PPP1R15AO75807 674 aaPredicted RBP14.1□□□□□ -0.15
KDM3A-202ENST00000409064 NEFMP07197 916 aa14.08□□□□□ -0.15
KDM3A-202ENST00000409064 PLEKHG5O94827 1062 aa14.08□□□□□ -0.16
KDM3A-202ENST00000409064 ERICH6Q7L0X2 663 aa14.06□□□□□ -0.16
KDM3A-202ENST00000409064 CFDP1Q9UEE9 299 aaPredicted RBP14.05□□□□□ -0.16
KDM3A-202ENST00000409064 MLECQ14165 292 aa14.05□□□□□ -0.16
KDM3A-202ENST00000409064 TDRD9Q8NDG6 1382 aaKnown RBP14.04□□□□□ -0.16
KDM3A-202ENST00000409064 CEP162Q5TB80 1403 aa14.03□□□□□ -0.16
KDM3A-202ENST00000409064 MROH2BQ7Z745 1585 aa14.03□□□□□ -0.16
KDM3A-202ENST00000409064 KDM2AQ9Y2K7 1162 aa14.02□□□□□ -0.16
KDM3A-202ENST00000409064 CLIP1P30622 1438 aa14.01□□□□□ -0.17
KDM3A-202ENST00000409064 RRP7BPQ9NSQ0 103 aa14.01□□□□□ -0.17
KDM3A-202ENST00000409064 A0A0G2JS52 829 aa13.99□□□□□ -0.17
KDM3A-202ENST00000409064 EEA1Q15075 1411 aa13.99□□□□□ -0.17
KDM3A-202ENST00000409064 CUX2O14529 1486 aa13.98□□□□□ -0.17
KDM3A-202ENST00000409064 TNIKQ9UKE5 1360 aa13.97□□□□□ -0.17
KDM3A-202ENST00000409064 CYB5RLQ6IPT4 315 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms