RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 NISCHQ9Y2I1 1504 aa32.59■■■□□ 2.81
RTN3-212ENST00000543123 CCDC180Q9P1Z9 1646 aa29.25■■■□□ 2.27
RTN3-212ENST00000543123 ABCC9O60706 1549 aa29■■■□□ 2.23
RTN3-212ENST00000543123 RB1CC1Q8TDY2 1594 aa27.77■■■□□ 2.04
RTN3-212ENST00000543123 NACADO15069 1562 aa27.6■■■□□ 2.01
RTN3-212ENST00000543123 DCAF8L2P0C7V8 631 aa27.39■■□□□ 1.98
RTN3-212ENST00000543123 MYO15BQ96JP2 1530 aa27.3■■□□□ 1.96
RTN3-212ENST00000543123 ZCCHC6Q5VYS8 1495 aaKnown RBP27.06■■□□□ 1.92
RTN3-212ENST00000543123 UNC13AQ9UPW8 1703 aa27.04■■□□□ 1.92
RTN3-212ENST00000543123 DCAF1Q9Y4B6 1507 aa26.99■■□□□ 1.91
RTN3-212ENST00000543123 PABPN1Q86U42 306 aaKnown RBP eCLIP26.98■■□□□ 1.91
RTN3-212ENST00000543123 DNAJC5BQ9UF47 199 aa26.96■■□□□ 1.91
RTN3-212ENST00000543123 BICRAQ9NZM4 1560 aa26.85■■□□□ 1.89
RTN3-212ENST00000543123 SHROOM4Q9ULL8 1493 aa26.68■■□□□ 1.86
RTN3-212ENST00000543123 SCRIBQ14160 1630 aa26.59■■□□□ 1.85
RTN3-212ENST00000543123 EIF4G1Q04637 1599 aaKnown RBP26.23■■□□□ 1.79
RTN3-212ENST00000543123 CC2D2AQ9P2K1 1620 aa26.22■■□□□ 1.79
RTN3-212ENST00000543123 CECR2Q9BXF3 1484 aa26.15■■□□□ 1.78
RTN3-212ENST00000543123 NCAPD3P42695 1498 aa25.45■■□□□ 1.66
RTN3-212ENST00000543123 SMARCA4P51532 1647 aa25.4■■□□□ 1.66
RTN3-212ENST00000543123 SMARCA2P51531 1590 aa25.38■■□□□ 1.65
RTN3-212ENST00000543123 ATAD2BQ9ULI0 1458 aa25.37■■□□□ 1.65
RTN3-212ENST00000543123 BAZ1AQ9NRL2 1556 aaPredicted RBP25.34■■□□□ 1.65
RTN3-212ENST00000543123 HMGXB3Q12766 1538 aa25.32■■□□□ 1.64
RTN3-212ENST00000543123 BAZ1BQ9UIG0 1483 aaKnown RBP25.18■■□□□ 1.62
RTN3-212ENST00000543123 PEG3Q9GZU2 1588 aa25.18■■□□□ 1.62
RTN3-212ENST00000543123 ERCC6Q03468 1493 aa25.11■■□□□ 1.61
RTN3-212ENST00000543123 MROH2BQ7Z745 1585 aa25.07■■□□□ 1.6
RTN3-212ENST00000543123 CUX2O14529 1486 aa25.02■■□□□ 1.6
RTN3-212ENST00000543123 NESP48681 1621 aa24.92■■□□□ 1.58
RTN3-212ENST00000543123 LAMC3Q9Y6N6 1575 aa24.89■■□□□ 1.58
RTN3-212ENST00000543123 WIZO95785 1651 aa24.77■■□□□ 1.56
RTN3-212ENST00000543123 DNAJC5Q9H3Z4 198 aa24.75■■□□□ 1.55
RTN3-212ENST00000543123 PDS5BQ9NTI5 1447 aa24.75■■□□□ 1.55
RTN3-212ENST00000543123 THOC2Q8NI27 1593 aaKnown RBP24.7■■□□□ 1.54
RTN3-212ENST00000543123 CADPSQ9ULU8 1353 aa24.67■■□□□ 1.54
RTN3-212ENST00000543123 KIF21AQ7Z4S6 1674 aa24.66■■□□□ 1.54
RTN3-212ENST00000543123 RSF1Q96T23 1441 aaPredicted RBP24.62■■□□□ 1.53
RTN3-212ENST00000543123 TOP2AP11388 1531 aaKnown RBP24.55■■□□□ 1.52
RTN3-212ENST00000543123 MRC2Q9UBG0 1479 aa24.5■■□□□ 1.51
RTN3-212ENST00000543123 CEP164Q9UPV0 1460 aa24.45■■□□□ 1.5
RTN3-212ENST00000543123 CFTRP13569 1480 aa24.44■■□□□ 1.5
RTN3-212ENST00000543123 WDR62O43379 1518 aa24.43■■□□□ 1.5
RTN3-212ENST00000543123 FANCD2Q9BXW9 1451 aa24.4■■□□□ 1.5
RTN3-212ENST00000543123 PRDM2Q13029 1718 aa24.24■■□□□ 1.47
RTN3-212ENST00000543123 CCDC88BA6NC98 1476 aa24.2■■□□□ 1.47
RTN3-212ENST00000543123 URB2Q14146 1524 aaKnown RBP24.15■■□□□ 1.46
RTN3-212ENST00000543123 ABCC8Q09428 1581 aa23.99■■□□□ 1.43
RTN3-212ENST00000543123 IFT140Q96RY7 1462 aa23.95■■□□□ 1.42
RTN3-212ENST00000543123 TOPBP1Q92547 1522 aa23.94■■□□□ 1.42
RTN3-212ENST00000543123 DNMBPQ6XZF7 1577 aa23.91■■□□□ 1.42
RTN3-212ENST00000543123 OSCARQ8IYS5 282 aa23.86■■□□□ 1.41
RTN3-212ENST00000543123 ZNF608Q9ULD9 1512 aaPredicted RBP23.81■■□□□ 1.4
RTN3-212ENST00000543123 EIF4G3O43432 1585 aaKnown RBP23.75■■□□□ 1.39
RTN3-212ENST00000543123 TRIM41Q8WV44 630 aa23.73■■□□□ 1.39
RTN3-212ENST00000543123 TARBP1Q13395 1621 aaKnown RBP23.71■■□□□ 1.39
RTN3-212ENST00000543123 POLA1P09884 1462 aaPredicted RBP23.71■■□□□ 1.39
RTN3-212ENST00000543123 AQRO60306 1485 aaKnown RBP eCLIP23.62■■□□□ 1.373e-7■■■■■ 30.5
RTN3-212ENST00000543123 SUPT5HO00267 1087 aaKnown RBP23.62■■□□□ 1.37
RTN3-212ENST00000543123 SOGA1O94964 1423 aa23.6■■□□□ 1.37
RTN3-212ENST00000543123 WDR97A6NE52 1622 aa23.59■■□□□ 1.37
RTN3-212ENST00000543123 FGD5Q6ZNL6 1462 aa23.58■■□□□ 1.37
RTN3-212ENST00000543123 RAD54L2Q9Y4B4 1467 aa23.57■■□□□ 1.36
RTN3-212ENST00000543123 CUX1P39880 1505 aa23.56■■□□□ 1.36
RTN3-212ENST00000543123 CHD1O14646 1710 aa23.52■■□□□ 1.36
RTN3-212ENST00000543123 RIMBP3CA6NJZ7 1639 aa23.51■■□□□ 1.35
RTN3-212ENST00000543123 RIMBP3BA6NNM3 1639 aa23.51■■□□□ 1.35
RTN3-212ENST00000543123 RIMBP3Q9UFD9 1639 aa23.51■■□□□ 1.35
RTN3-212ENST00000543123 TDRD9Q8NDG6 1382 aaKnown RBP23.51■■□□□ 1.35
RTN3-212ENST00000543123 ARHGEF11O15085 1522 aa23.48■■□□□ 1.35
RTN3-212ENST00000543123 FBLN2P98095 1184 aa23.47■■□□□ 1.35
RTN3-212ENST00000543123 SNAPC4Q5SXM2 1469 aa23.43■■□□□ 1.34
RTN3-212ENST00000543123 GRIN2BQ13224 1484 aa23.43■■□□□ 1.34
RTN3-212ENST00000543123 MAGI1Q96QZ7 1491 aaPredicted RBP23.43■■□□□ 1.34
RTN3-212ENST00000543123 CHMP7Q8WUX9 453 aaPredicted RBP23.35■■□□□ 1.33
RTN3-212ENST00000543123 ABCA10Q8WWZ4 1543 aa23.34■■□□□ 1.33
RTN3-212ENST00000543123 GAPVD1Q14C86 1478 aa23.34■■□□□ 1.33
RTN3-212ENST00000543123 SYNJ2O15056 1496 aa23.33■■□□□ 1.33
RTN3-212ENST00000543123 SYNJ1O43426 1573 aa23.32■■□□□ 1.32
RTN3-212ENST00000543123 PBRM1Q86U86 1689 aa23.32■■□□□ 1.32
RTN3-212ENST00000543123 WRNQ14191 1432 aaPredicted RBP eCLIP23.31■■□□□ 1.32
RTN3-212ENST00000543123 ABCA5Q8WWZ7 1642 aa23.29■■□□□ 1.32
RTN3-212ENST00000543123 TOP2BQ02880 1626 aa23.27■■□□□ 1.32
RTN3-212ENST00000543123 CLASP1Q7Z460 1538 aa23.27■■□□□ 1.32
RTN3-212ENST00000543123 BIVM-ERCC5R4GMW8 1640 aa23.26■■□□□ 1.31
RTN3-212ENST00000543123 CYB5RLQ6IPT4 315 aa23.25■■□□□ 1.31
RTN3-212ENST00000543123 ARAP1Q96P48 1450 aa23.24■■□□□ 1.31
RTN3-212ENST00000543123 ADAMTS12P58397 1594 aa23.11■■□□□ 1.29
RTN3-212ENST00000543123 GRIN2AQ12879 1464 aa23.11■■□□□ 1.29
RTN3-212ENST00000543123 ERICH3Q5RHP9 1530 aa23.08■■□□□ 1.29
RTN3-212ENST00000543123 FHAD1B1AJZ9 1412 aa23.07■■□□□ 1.28
RTN3-212ENST00000543123 NUP160Q12769 1436 aa23.01■■□□□ 1.27
RTN3-212ENST00000543123 TRHP20396 242 aaPredicted RBP22.99■■□□□ 1.27
RTN3-212ENST00000543123 CEP170Q5SW79 1584 aa22.98■■□□□ 1.27
RTN3-212ENST00000543123 SHROOM2Q13796 1616 aa22.9■■□□□ 1.26
RTN3-212ENST00000543123 KIF27Q86VH2 1401 aa22.85■■□□□ 1.25
RTN3-212ENST00000543123 ERCC6L2Q5T890 1561 aa22.84■■□□□ 1.25
RTN3-212ENST00000543123 CUL7Q14999 1698 aa22.8■■□□□ 1.24
RTN3-212ENST00000543123 RUSC2Q8N2Y8 1516 aa22.79■■□□□ 1.24
RTN3-212ENST00000543123 PRG4Q92954 1404 aaPredicted RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms