RNA–Protein interactions for RNA: ENST00000256474.2

VHL-201, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VHL, Length 3,737 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-201ENST00000256474 NISCHQ9Y2I1 1504 aa26.57■■□□□ 1.84
VHL-201ENST00000256474 SHROOM4Q9ULL8 1493 aa23.93■■□□□ 1.42
VHL-201ENST00000256474 SUPT5HO00267 1087 aaKnown RBP23.62■■□□□ 1.37
VHL-201ENST00000256474 DCAF8L2P0C7V8 631 aa23.48■■□□□ 1.35
VHL-201ENST00000256474 CHIC1Q5VXU3 224 aa22.49■■□□□ 1.19
VHL-201ENST00000256474 PCGF6Q9BYE7 350 aa22.45■■□□□ 1.18
VHL-201ENST00000256474 ZCCHC6Q5VYS8 1495 aaKnown RBP22.39■■□□□ 1.17
VHL-201ENST00000256474 MYO15BQ96JP2 1530 aa22.3■■□□□ 1.16
VHL-201ENST00000256474 LOC105371045A0A1W2PR82 267 aa22.25■■□□□ 1.15
VHL-201ENST00000256474 EHMT2Q96KQ7 1210 aa22.22■■□□□ 1.15
VHL-201ENST00000256474 PPARGC1BQ86YN6 1023 aaKnown RBP22.12■■□□□ 1.13
VHL-201ENST00000256474 HRCP23327 699 aa22.1■■□□□ 1.13
VHL-201ENST00000256474 FAM9AQ8IZU1 332 aaPredicted RBP22.01■■□□□ 1.11
VHL-201ENST00000256474 CCDC180Q9P1Z9 1646 aa21.99■■□□□ 1.11
VHL-201ENST00000256474 TRIM41Q8WV44 630 aa21.7■■□□□ 1.06
VHL-201ENST00000256474 TRIM26Q12899 539 aaPredicted RBP21.54■■□□□ 1.04
VHL-201ENST00000256474 TTBK1Q5TCY1 1321 aaPredicted RBP21.46■■□□□ 1.03
VHL-201ENST00000256474 SCRIBQ14160 1630 aa21.46■■□□□ 1.03
VHL-201ENST00000256474 ABCC9O60706 1549 aa21.35■■□□□ 1.01
VHL-201ENST00000256474 DCAF1Q9Y4B6 1507 aa21.35■■□□□ 1.01
VHL-201ENST00000256474 RSF1Q96T23 1441 aaPredicted RBP21.3■■□□□ 1
VHL-201ENST00000256474 RB1CC1Q8TDY2 1594 aa21.1■□□□□ 0.97
VHL-201ENST00000256474 CECR2Q9BXF3 1484 aa21.07■□□□□ 0.96
VHL-201ENST00000256474 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.06■□□□□ 0.96
VHL-201ENST00000256474 ZEB1P37275 1124 aaPredicted RBP21■□□□□ 0.95
VHL-201ENST00000256474 CCER1Q8TC90 406 aaPredicted RBP21■□□□□ 0.95
VHL-201ENST00000256474 RANGAP1P46060 587 aaPredicted RBP20.9■□□□□ 0.94
VHL-201ENST00000256474 MROH2BQ7Z745 1585 aa20.86■□□□□ 0.93
VHL-201ENST00000256474 UBTFP17480 764 aaKnown RBP20.84■□□□□ 0.93
VHL-201ENST00000256474 PABPN1Q86U42 306 aaKnown RBP eCLIP20.81■□□□□ 0.92
VHL-201ENST00000256474 WIZO95785 1651 aa20.73■□□□□ 0.91
VHL-201ENST00000256474 SCAF1Q9H7N4 1312 aaKnown RBP20.63■□□□□ 0.89
VHL-201ENST00000256474 HNRNPUL2Q1KMD3 747 aaKnown RBP20.58■□□□□ 0.88
VHL-201ENST00000256474 NACADO15069 1562 aa20.57■□□□□ 0.88
VHL-201ENST00000256474 ABCC8Q09428 1581 aa20.57■□□□□ 0.88
VHL-201ENST00000256474 YTHDC1Q96MU7 727 aaKnown RBP20.54■□□□□ 0.88
VHL-201ENST00000256474 DIEXFQ68CQ4 756 aaKnown RBP20.51■□□□□ 0.87
VHL-201ENST00000256474 CCDC88BA6NC98 1476 aa20.5■□□□□ 0.87
VHL-201ENST00000256474 SOGA1O94964 1423 aa20.49■□□□□ 0.87
VHL-201ENST00000256474 CSRNP3Q8WYN3 585 aa20.47■□□□□ 0.87
VHL-201ENST00000256474 NEUROD1Q13562 356 aa20.42■□□□□ 0.86
VHL-201ENST00000256474 CEP162Q5TB80 1403 aa20.39■□□□□ 0.85
VHL-201ENST00000256474 APLP2Q06481 763 aa20.39■□□□□ 0.85
VHL-201ENST00000256474 RUSC2Q8N2Y8 1516 aa20.37■□□□□ 0.85
VHL-201ENST00000256474 BAZ1AQ9NRL2 1556 aaPredicted RBP20.36■□□□□ 0.85
VHL-201ENST00000256474 GTF3C3Q9Y5Q9 886 aa20.33■□□□□ 0.84
VHL-201ENST00000256474 ACIN1Q9UKV3 1341 aaKnown RBP20.31■□□□□ 0.84
VHL-201ENST00000256474 CENPBP07199 599 aaPredicted RBP20.29■□□□□ 0.84
VHL-201ENST00000256474 ITGAEP38570 1179 aa20.17■□□□□ 0.82
VHL-201ENST00000256474 TOP2AP11388 1531 aaKnown RBP20.17■□□□□ 0.82
VHL-201ENST00000256474 TNIKQ9UKE5 1360 aa20.17■□□□□ 0.82
VHL-201ENST00000256474 ZNF316A6NFI3 1004 aaPredicted RBP20.16■□□□□ 0.82
VHL-201ENST00000256474 SMARCA4P51532 1647 aa20.14■□□□□ 0.81
VHL-201ENST00000256474 SMARCA2P51531 1590 aa20.12■□□□□ 0.81
VHL-201ENST00000256474 WRNQ14191 1432 aaPredicted RBP eCLIP20.12■□□□□ 0.81
VHL-201ENST00000256474 PELP1Q8IZL8 1130 aaKnown RBP20.07■□□□□ 0.8
VHL-201ENST00000256474 MIER1Q8N108 512 aa20.06■□□□□ 0.8
VHL-201ENST00000256474 GOLGA3Q08378 1498 aa20.05■□□□□ 0.8
VHL-201ENST00000256474 CLIP1P30622 1438 aa20.03■□□□□ 0.8
VHL-201ENST00000256474 EIF4G1Q04637 1599 aaKnown RBP20■□□□□ 0.79
VHL-201ENST00000256474 ATP1B4Q9UN42 357 aaPredicted RBP19.99■□□□□ 0.79
VHL-201ENST00000256474 EEA1Q15075 1411 aa19.93■□□□□ 0.78
VHL-201ENST00000256474 RAPGEF2Q9Y4G8 1499 aa19.88■□□□□ 0.77
VHL-201ENST00000256474 CEP164Q9UPV0 1460 aa19.87■□□□□ 0.77
VHL-201ENST00000256474 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
VHL-201ENST00000256474 KANK4Q5T7N3 995 aaPredicted RBP19.84■□□□□ 0.77
VHL-201ENST00000256474 SYNJ1O43426 1573 aa19.82■□□□□ 0.76
VHL-201ENST00000256474 UNC13AQ9UPW8 1703 aa19.82■□□□□ 0.76
VHL-201ENST00000256474 P3H3Q8IVL6 736 aa19.8■□□□□ 0.76
VHL-201ENST00000256474 VPS8Q8N3P4 1428 aa19.77■□□□□ 0.76
VHL-201ENST00000256474 ATAD2BQ9ULI0 1458 aa19.76■□□□□ 0.75
VHL-201ENST00000256474 BICRAQ9NZM4 1560 aa19.72■□□□□ 0.75
VHL-201ENST00000256474 FAM50AQ14320 339 aaKnown RBP19.68■□□□□ 0.74
VHL-201ENST00000256474 HIRIP3Q9BW71 556 aaPredicted RBP19.62■□□□□ 0.73
VHL-201ENST00000256474 KIF21BO75037 1637 aa19.59■□□□□ 0.73
VHL-201ENST00000256474 BCANQ96GW7 911 aa19.55■□□□□ 0.72
VHL-201ENST00000256474 DHX57Q6P158 1386 aaKnown RBP19.53■□□□□ 0.72
VHL-201ENST00000256474 KCNH8Q96L42 1107 aa19.52■□□□□ 0.71
VHL-201ENST00000256474 SIN3AQ96ST3 1273 aa19.5■□□□□ 0.71
VHL-201ENST00000256474 KIF27Q86VH2 1401 aa19.48■□□□□ 0.71
VHL-201ENST00000256474 DDX10Q13206 875 aaKnown RBP19.48■□□□□ 0.71
VHL-201ENST00000256474 ARAP1Q96P48 1450 aa19.47■□□□□ 0.71
VHL-201ENST00000256474 CCNB3Q8WWL7 1395 aa19.42■□□□□ 0.7
VHL-201ENST00000256474 CUX2O14529 1486 aa19.39■□□□□ 0.69
VHL-201ENST00000256474 ARID3CA6NKF2 412 aa19.38■□□□□ 0.69
VHL-201ENST00000256474 PEG3Q9GZU2 1588 aa19.37■□□□□ 0.69
VHL-201ENST00000256474 TOP2BQ02880 1626 aa19.36■□□□□ 0.69
VHL-201ENST00000256474 PRXQ9BXM0 1461 aa19.35■□□□□ 0.69
VHL-201ENST00000256474 RAB3GAP2Q9H2M9 1393 aa19.34■□□□□ 0.69
VHL-201ENST00000256474 CUX1P39880 1505 aa19.34■□□□□ 0.69
VHL-201ENST00000256474 SUPT16HQ9Y5B9 1047 aaKnown RBP19.34■□□□□ 0.69
VHL-201ENST00000256474 TRIM52Q96A61 297 aa19.31■□□□□ 0.68
VHL-201ENST00000256474 CARMIL1Q5VZK9 1371 aa19.29■□□□□ 0.68
VHL-201ENST00000256474 ARHGAP35Q9NRY4 1499 aa19.28■□□□□ 0.68
VHL-201ENST00000256474 CNGB1Q14028 1251 aaPredicted RBP19.28■□□□□ 0.68
VHL-201ENST00000256474 CLSPNQ9HAW4 1339 aa19.27■□□□□ 0.68
VHL-201ENST00000256474 IGF1RP08069 1367 aa19.25■□□□□ 0.67
VHL-201ENST00000256474 FKBP8Q14318 412 aa19.24■□□□□ 0.67
VHL-201ENST00000256474 CHIC2Q9UKJ5 165 aa19.21■□□□□ 0.67
VHL-201ENST00000256474 PHLDB1Q86UU1 1377 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms