Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.553e-8■□□□□ 10.1
YBX3P16989 TAF15-213ENST00000605197 760 ntTSL 215.3■□□□□ 0.043e-8■□□□□ 10.1
YBX3P16989 TAF15-212ENST00000604879 808 ntTSL 515.3■□□□□ 0.043e-8■□□□□ 10.1
YBX3P16989 AC015849.4-201ENST00000603678 421 ntTSL 5 BASIC12.33□□□□□ -0.443e-8■□□□□ 10.1
YBX3P16989 NFAT5-209ENST00000567239 6376 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.474e-7■□□□□ 10.1
YBX3P16989 NFAT5-207ENST00000565301 653 ntTSL 29.72□□□□□ -0.854e-7■□□□□ 10.1
YBX3P16989 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC8.36□□□□□ -1.074e-7■□□□□ 10.1
YBX3P16989 NFAT5-204ENST00000426654 14219 ntTSL 1 (best)7.85□□□□□ -1.154e-7■□□□□ 10.1
YBX3P16989 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC7.55□□□□□ -1.24e-7■□□□□ 10.1
YBX3P16989 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.67□□□□□ -1.344e-7■□□□□ 10.1
YBX3P16989 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.44□□□□□ -1.384e-7■□□□□ 10.1
YBX3P16989 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.39□□□□□ -1.714e-7■□□□□ 10.1
YBX3P16989 PDXK-206ENST00000398085 796 ntTSL 329.26■■■□□ 2.272e-8■□□□□ 10.1
YBX3P16989 DDX41-215ENST00000512431 904 ntTSL 517.95■□□□□ 0.463e-6■□□□□ 10.1
YBX3P16989 DDX41-203ENST00000504781 618 ntTSL 312.42□□□□□ -0.423e-6■□□□□ 10.1
YBX3P16989 TTC3-208ENST00000428693 999 ntTSL 516.27■□□□□ 0.21e-8■□□□□ 10.1
YBX3P16989 FASN-202ENST00000578424 951 ntTSL 224.28■■□□□ 1.484e-10■□□□□ 10.1
YBX3P16989 FASN-204ENST00000580382 681 ntTSL 322.83■■□□□ 1.254e-10■□□□□ 10.1
YBX3P16989 DHRS2-203ENST00000432832 834 ntTSL 226.06■■□□□ 1.762e-6■□□□□ 10.1
YBX3P16989 PGD-202ENST00000460189 767 ntTSL 218.6■□□□□ 0.573e-12■□□□□ 10.1
YBX3P16989 TARS-206ENST00000504698 633 ntTSL 39.89□□□□□ -0.831e-9■□□□□ 10.1
YBX3P16989 RANBP1-204ENST00000416427 645 ntTSL 533.92■■■■□ 3.021e-37■□□□□ 10.1
YBX3P16989 HDLBP-220ENST00000442730 683 ntTSL 229.25■■■□□ 2.272e-9■□□□□ 10.1
YBX3P16989 RANBP1-206ENST00000421656 333 ntTSL 323.08■■□□□ 1.291e-37■□□□□ 10.1
YBX3P16989 RANBP1-214ENST00000488484 699 ntTSL 220.77■□□□□ 0.921e-37■□□□□ 10.1
YBX3P16989 HDLBP-240ENST00000484412 669 ntTSL 517.86■□□□□ 0.452e-9■□□□□ 10.1
YBX3P16989 HDLBP-242ENST00000488013 651 ntTSL 213.29□□□□□ -0.282e-9■□□□□ 10.1
YBX3P16989 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC10.06□□□□□ -0.86e-9■□□□□ 10.1
YBX3P16989 UCK2-204ENST00000464197 811 ntTSL 49.97□□□□□ -0.816e-9■□□□□ 10.1
YBX3P16989 UCK2-205ENST00000469256 753 ntTSL 3 BASIC8.01□□□□□ -1.136e-9■□□□□ 10.1
YBX3P16989 UCK2-202ENST00000462329 830 ntTSL 1 (best)7.48□□□□□ -1.216e-9■□□□□ 10.1
YBX3P16989 LAMP2-204ENST00000486593 1069 ntTSL 59.92□□□□□ -0.821e-6■□□□□ 10.1
YBX3P16989 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC41.08■■■■■ 4.173e-7■□□□□ 10.1
YBX3P16989 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC38.33■■■■□ 3.733e-7■□□□□ 10.1
YBX3P16989 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC33.03■■■□□ 2.883e-7■□□□□ 10.1
YBX3P16989 CSNK1E-215ENST00000612795 885 ntTSL 224.4■■□□□ 1.53e-7■□□□□ 10.1
YBX3P16989 CSNK1E-208ENST00000431611 814 ntTSL 520.78■□□□□ 0.923e-7■□□□□ 10.1
YBX3P16989 CSNK1E-210ENST00000442216 787 ntTSL 219.27■□□□□ 0.683e-7■□□□□ 10.1
YBX3P16989 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.63e-7■□□□□ 10.1
YBX3P16989 CSNK1E-211ENST00000451964 873 ntTSL 316.38■□□□□ 0.213e-7■□□□□ 10.1
YBX3P16989 CSNK1E-214ENST00000498529 381 ntTSL 38.13□□□□□ -1.113e-7■□□□□ 10.1
YBX3P16989 BZW2-209ENST00000437745 1711 ntTSL 1 (best)16.91■□□□□ 0.32e-6■□□□□ 10.1
YBX3P16989 BZW2-204ENST00000415365 1405 ntTSL 1 (best)15.22■□□□□ 0.032e-6■□□□□ 10.1
YBX3P16989 BZW2-214ENST00000630952 1721 ntTSL 5 BASIC13.48□□□□□ -0.252e-6■□□□□ 10.1
YBX3P16989 BZW2-207ENST00000433922 1862 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.572e-6■□□□□ 10.1
YBX3P16989 BZW2-201ENST00000258761 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.582e-6■□□□□ 10.1
YBX3P16989 BZW2-202ENST00000405202 1689 ntTSL 5 BASIC11.19□□□□□ -0.622e-6■□□□□ 10.1
YBX3P16989 BZW2-212ENST00000452975 1464 ntTSL 1 (best) BASIC10.64□□□□□ -0.712e-6■□□□□ 10.1
YBX3P16989 BZW2-208ENST00000436868 1784 ntTSL 59.71□□□□□ -0.852e-6■□□□□ 10.1
YBX3P16989 PDCD10-211ENST00000481136 674 ntTSL 215.09■□□□□ 0.017e-9■□□□□ 10.1
YBX3P16989 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC33.11■■■□□ 2.891e-8■□□□□ 10.1
YBX3P16989 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.021e-8■□□□□ 10.1
YBX3P16989 C2orf88-203ENST00000409545 570 ntTSL 37.98□□□□□ -1.131e-8■□□□□ 10.1
YBX3P16989 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.41e-6■□□□□ 10.1
YBX3P16989 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC17.63■□□□□ 0.411e-6■□□□□ 10.1
YBX3P16989 TRAF7-202ENST00000564067 874 ntTSL 325.38■■□□□ 1.654e-8■□□□□ 10.1
YBX3P16989 SMARCA2-219ENST00000634287 424 ntTSL 321.68■■□□□ 1.062e-6■□□□□ 10.1
YBX3P16989 SMARCA2-227ENST00000634760 5847 ntTSL 521.46■■□□□ 1.032e-6■□□□□ 10.1
YBX3P16989 SMARCA2-216ENST00000457226 736 ntTSL 518.07■□□□□ 0.482e-6■□□□□ 10.1
YBX3P16989 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC15.72■□□□□ 0.112e-6■□□□□ 10.1
YBX3P16989 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.01□□□□□ -0.012e-6■□□□□ 10.1
YBX3P16989 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.7□□□□□ -0.062e-6■□□□□ 10.1
YBX3P16989 SMARCA2-217ENST00000491574 645 ntTSL 514.32□□□□□ -0.122e-6■□□□□ 10.1
YBX3P16989 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.142e-6■□□□□ 10.1
YBX3P16989 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.182e-6■□□□□ 10.1
YBX3P16989 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC12.16□□□□□ -0.462e-6■□□□□ 10.1
YBX3P16989 SMARCA2-213ENST00000439732 755 ntTSL 312.06□□□□□ -0.482e-6■□□□□ 10.1
YBX3P16989 SMARCA2-258ENST00000637103 5657 ntTSL 5 BASIC11.37□□□□□ -0.592e-6■□□□□ 10.1
YBX3P16989 SMARCA2-263ENST00000637806 7061 ntTSL 5 BASIC10.67□□□□□ -0.72e-6■□□□□ 10.1
YBX3P16989 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC7.96□□□□□ -1.142e-6■□□□□ 10.1
YBX3P16989 MARCH6-202ENST00000449913 3062 ntTSL 2 BASIC9.96□□□□□ -0.814e-9■□□□□ 10.1
YBX3P16989 MARCH6-204ENST00000503788 2874 ntTSL 2 BASIC9.13□□□□□ -0.954e-9■□□□□ 10.1
YBX3P16989 COPS6-207ENST00000472107 835 ntTSL 225.84■■□□□ 1.733e-7■□□□□ 10.1
YBX3P16989 COPS6-205ENST00000465027 1171 ntTSL 1 (best)23.56■■□□□ 1.363e-7■□□□□ 10.1
YBX3P16989 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.363e-9■□□□□ 10.1
YBX3P16989 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.192e-6■□□□□ 10.1
YBX3P16989 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC7.51□□□□□ -1.212e-6■□□□□ 10.1
YBX3P16989 NFX1-202ENST00000379521 3609 ntTSL 1 (best)7.25□□□□□ -1.252e-6■□□□□ 10.1
YBX3P16989 RPS11-207ENST00000601216 602 ntTSL 413.75□□□□□ -0.211e-82■□□□□ 10.1
YBX3P16989 RPS11-203ENST00000596873 583 ntTSL 2 BASIC10.09□□□□□ -0.791e-82■□□□□ 10.1
YBX3P16989 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.091e-9■□□□□ 10.1
YBX3P16989 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC31.05■■■□□ 2.563e-7■□□□□ 10.1
YBX3P16989 ACY1-218ENST00000637034 745 ntTSL 320.83■□□□□ 0.932e-6■□□□□ 10.1
YBX3P16989 ACY1-226ENST00000637746 685 ntTSL 220.83■□□□□ 0.932e-6■□□□□ 10.1
YBX3P16989 SEMA4B-215ENST00000560089 2804 ntTSL 1 (best)19.59■□□□□ 0.733e-6■□□□□ 10.1
YBX3P16989 ACY1-220ENST00000637149 386 ntTSL 316.98■□□□□ 0.312e-6■□□□□ 10.1
YBX3P16989 ACY1-208ENST00000490244 812 ntTSL 216.73■□□□□ 0.272e-6■□□□□ 10.1
YBX3P16989 ACY1-227ENST00000638077 456 ntTSL 210.9□□□□□ -0.662e-6■□□□□ 10.1
YBX3P16989 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.962e-14■□□□□ 10.1
YBX3P16989 SLC25A39-217ENST00000593166 797 ntTSL 319.57■□□□□ 0.725e-13■□□□□ 10.1
YBX3P16989 UBR4-205ENST00000417040 6175 ntTSL 512.22□□□□□ -0.451e-10■□□□□ 10.1
YBX3P16989 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC27.93■■■□□ 2.063e-8■□□□□ 10.1
YBX3P16989 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC19.77■□□□□ 0.763e-8■□□□□ 10.1
YBX3P16989 FGF13-205ENST00000441825 1625 ntTSL 5 BASIC11.75□□□□□ -0.533e-8■□□□□ 10.1
YBX3P16989 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.89□□□□□ -1.313e-8■□□□□ 10.1
YBX3P16989 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.593e-8■□□□□ 10.1
YBX3P16989 IGFBP3-204ENST00000417621 810 ntTSL 219.21■□□□□ 0.673e-6■□□□□ 10.1
YBX3P16989 IGFBP3-207ENST00000460209 583 ntTSL 218.38■□□□□ 0.533e-6■□□□□ 10.1
YBX3P16989 IGFBP3-205ENST00000428530 894 ntTSL 516.26■□□□□ 0.193e-6■□□□□ 10.1
YBX3P16989 SP1-201ENST00000327443 2846 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.771e-6■□□□□ 10.1
Retrieved 100 of 29,075 protein–RNA pairs in 146.4 ms