RNA–Protein interactions for RNA: ENST00000457226.2

SMARCA2-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, humanhuman

TSL 5

Gene SMARCA2, Length 736 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA2-216ENST00000457226 NISCHQ9Y2I1 1504 aa33.27■■■□□ 2.92
SMARCA2-216ENST00000457226 CCDC180Q9P1Z9 1646 aa29.82■■■□□ 2.36
SMARCA2-216ENST00000457226 ABCC9O60706 1549 aa29.56■■■□□ 2.32
SMARCA2-216ENST00000457226 RB1CC1Q8TDY2 1594 aa28.31■■■□□ 2.12
SMARCA2-216ENST00000457226 NACADO15069 1562 aa28.17■■■□□ 2.1
SMARCA2-216ENST00000457226 DCAF8L2P0C7V8 631 aa27.98■■■□□ 2.07
SMARCA2-216ENST00000457226 MYO15BQ96JP2 1530 aa27.89■■■□□ 2.06
SMARCA2-216ENST00000457226 ZCCHC6Q5VYS8 1495 aaKnown RBP27.61■■■□□ 2.01
SMARCA2-216ENST00000457226 DCAF1Q9Y4B6 1507 aa27.57■■■□□ 2
SMARCA2-216ENST00000457226 PABPN1Q86U42 306 aaKnown RBP eCLIP27.53■■■□□ 2
SMARCA2-216ENST00000457226 DNAJC5BQ9UF47 199 aa27.51■■□□□ 1.99
SMARCA2-216ENST00000457226 UNC13AQ9UPW8 1703 aa27.48■■□□□ 1.99
SMARCA2-216ENST00000457226 BICRAQ9NZM4 1560 aa27.37■■□□□ 1.97
SMARCA2-216ENST00000457226 SHROOM4Q9ULL8 1493 aa27.23■■□□□ 1.95
SMARCA2-216ENST00000457226 SCRIBQ14160 1630 aa27.08■■□□□ 1.93
SMARCA2-216ENST00000457226 EIF4G1Q04637 1599 aaKnown RBP26.74■■□□□ 1.87
SMARCA2-216ENST00000457226 CC2D2AQ9P2K1 1620 aa26.72■■□□□ 1.87
SMARCA2-216ENST00000457226 CECR2Q9BXF3 1484 aa26.67■■□□□ 1.86
SMARCA2-216ENST00000457226 NCAPD3P42695 1498 aa25.99■■□□□ 1.75
SMARCA2-216ENST00000457226 ATAD2BQ9ULI0 1458 aa25.9■■□□□ 1.74
SMARCA2-216ENST00000457226 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
SMARCA2-216ENST00000457226 SMARCA4P51532 1647 aa25.89■■□□□ 1.74
SMARCA2-216ENST00000457226 BAZ1AQ9NRL2 1556 aaPredicted RBP25.86■■□□□ 1.73
SMARCA2-216ENST00000457226 HMGXB3Q12766 1538 aa25.82■■□□□ 1.72
SMARCA2-216ENST00000457226 PEG3Q9GZU2 1588 aa25.69■■□□□ 1.7
SMARCA2-216ENST00000457226 BAZ1BQ9UIG0 1483 aaKnown RBP25.69■■□□□ 1.7
SMARCA2-216ENST00000457226 ERCC6Q03468 1493 aa25.6■■□□□ 1.69
SMARCA2-216ENST00000457226 MROH2BQ7Z745 1585 aa25.58■■□□□ 1.69
SMARCA2-216ENST00000457226 CUX2O14529 1486 aa25.52■■□□□ 1.68
SMARCA2-216ENST00000457226 NESP48681 1621 aa25.4■■□□□ 1.66
SMARCA2-216ENST00000457226 LAMC3Q9Y6N6 1575 aa25.39■■□□□ 1.65
SMARCA2-216ENST00000457226 DNAJC5Q9H3Z4 198 aa25.27■■□□□ 1.64
SMARCA2-216ENST00000457226 PDS5BQ9NTI5 1447 aa25.27■■□□□ 1.64
SMARCA2-216ENST00000457226 WIZO95785 1651 aa25.25■■□□□ 1.63
SMARCA2-216ENST00000457226 CADPSQ9ULU8 1353 aa25.2■■□□□ 1.63
SMARCA2-216ENST00000457226 THOC2Q8NI27 1593 aaKnown RBP25.15■■□□□ 1.62
SMARCA2-216ENST00000457226 RSF1Q96T23 1441 aaPredicted RBP25.15■■□□□ 1.62
SMARCA2-216ENST00000457226 KIF21AQ7Z4S6 1674 aa25.08■■□□□ 1.61
SMARCA2-216ENST00000457226 TOP2AP11388 1531 aaKnown RBP25.04■■□□□ 1.6
SMARCA2-216ENST00000457226 MRC2Q9UBG0 1479 aa24.99■■□□□ 1.59
SMARCA2-216ENST00000457226 CFTRP13569 1480 aa24.95■■□□□ 1.58
SMARCA2-216ENST00000457226 CEP164Q9UPV0 1460 aa24.94■■□□□ 1.58
SMARCA2-216ENST00000457226 WDR62O43379 1518 aa24.91■■□□□ 1.58
SMARCA2-216ENST00000457226 FANCD2Q9BXW9 1451 aa24.89■■□□□ 1.58
SMARCA2-216ENST00000457226 CCDC88BA6NC98 1476 aa24.72■■□□□ 1.55
SMARCA2-216ENST00000457226 PRDM2Q13029 1718 aa24.64■■□□□ 1.53
SMARCA2-216ENST00000457226 URB2Q14146 1524 aaKnown RBP24.63■■□□□ 1.53
SMARCA2-216ENST00000457226 ABCC8Q09428 1581 aa24.5■■□□□ 1.51
SMARCA2-216ENST00000457226 IFT140Q96RY7 1462 aa24.45■■□□□ 1.5
SMARCA2-216ENST00000457226 TOPBP1Q92547 1522 aa24.42■■□□□ 1.5
SMARCA2-216ENST00000457226 OSCARQ8IYS5 282 aa24.38■■□□□ 1.49
SMARCA2-216ENST00000457226 DNMBPQ6XZF7 1577 aa24.37■■□□□ 1.49
SMARCA2-216ENST00000457226 ZNF608Q9ULD9 1512 aaPredicted RBP24.28■■□□□ 1.48
SMARCA2-216ENST00000457226 EIF4G3O43432 1585 aaKnown RBP24.19■■□□□ 1.46
SMARCA2-216ENST00000457226 POLA1P09884 1462 aaPredicted RBP24.19■■□□□ 1.46
SMARCA2-216ENST00000457226 TARBP1Q13395 1621 aaKnown RBP24.17■■□□□ 1.46
SMARCA2-216ENST00000457226 TRIM41Q8WV44 630 aa24.17■■□□□ 1.46
SMARCA2-216ENST00000457226 SUPT5HO00267 1087 aaKnown RBP24.14■■□□□ 1.45
SMARCA2-216ENST00000457226 SOGA1O94964 1423 aa24.11■■□□□ 1.45
SMARCA2-216ENST00000457226 AQRO60306 1485 aaKnown RBP eCLIP24.1■■□□□ 1.45
SMARCA2-216ENST00000457226 WDR97A6NE52 1622 aa24.06■■□□□ 1.44
SMARCA2-216ENST00000457226 FGD5Q6ZNL6 1462 aa24.06■■□□□ 1.44
SMARCA2-216ENST00000457226 RAD54L2Q9Y4B4 1467 aa24.05■■□□□ 1.44
SMARCA2-216ENST00000457226 CUX1P39880 1505 aa24.04■■□□□ 1.44
SMARCA2-216ENST00000457226 TDRD9Q8NDG6 1382 aaKnown RBP24■■□□□ 1.43
SMARCA2-216ENST00000457226 FBLN2P98095 1184 aa23.95■■□□□ 1.42
SMARCA2-216ENST00000457226 RIMBP3CA6NJZ7 1639 aa23.94■■□□□ 1.42
SMARCA2-216ENST00000457226 RIMBP3BA6NNM3 1639 aa23.94■■□□□ 1.42
SMARCA2-216ENST00000457226 RIMBP3Q9UFD9 1639 aa23.94■■□□□ 1.42
SMARCA2-216ENST00000457226 ARHGEF11O15085 1522 aa23.92■■□□□ 1.42
SMARCA2-216ENST00000457226 CHD1O14646 1710 aa23.92■■□□□ 1.42
SMARCA2-216ENST00000457226 GRIN2BQ13224 1484 aa23.91■■□□□ 1.42
SMARCA2-216ENST00000457226 MAGI1Q96QZ7 1491 aaPredicted RBP23.91■■□□□ 1.42
SMARCA2-216ENST00000457226 SNAPC4Q5SXM2 1469 aa23.88■■□□□ 1.41
SMARCA2-216ENST00000457226 CHMP7Q8WUX9 453 aaPredicted RBP23.85■■□□□ 1.41
SMARCA2-216ENST00000457226 ABCA10Q8WWZ4 1543 aa23.83■■□□□ 1.41
SMARCA2-216ENST00000457226 GAPVD1Q14C86 1478 aa23.82■■□□□ 1.4
SMARCA2-216ENST00000457226 WRNQ14191 1432 aaPredicted RBP eCLIP23.81■■□□□ 1.4
SMARCA2-216ENST00000457226 SYNJ2O15056 1496 aa23.81■■□□□ 1.4
SMARCA2-216ENST00000457226 SYNJ1O43426 1573 aa23.78■■□□□ 1.4
SMARCA2-216ENST00000457226 CYB5RLQ6IPT4 315 aa23.74■■□□□ 1.39
SMARCA2-216ENST00000457226 TOP2BQ02880 1626 aa23.73■■□□□ 1.39
SMARCA2-216ENST00000457226 ABCA5Q8WWZ7 1642 aa23.73■■□□□ 1.39
SMARCA2-216ENST00000457226 PBRM1Q86U86 1689 aa23.73■■□□□ 1.39
SMARCA2-216ENST00000457226 CLASP1Q7Z460 1538 aa23.72■■□□□ 1.39
SMARCA2-216ENST00000457226 BIVM-ERCC5R4GMW8 1640 aa23.72■■□□□ 1.39
SMARCA2-216ENST00000457226 ARAP1Q96P48 1450 aa23.67■■□□□ 1.38
SMARCA2-216ENST00000457226 GRIN2AQ12879 1464 aa23.57■■□□□ 1.36
SMARCA2-216ENST00000457226 ERICH3Q5RHP9 1530 aa23.56■■□□□ 1.36
SMARCA2-216ENST00000457226 FHAD1B1AJZ9 1412 aa23.55■■□□□ 1.36
SMARCA2-216ENST00000457226 ADAMTS12P58397 1594 aa23.55■■□□□ 1.36
SMARCA2-216ENST00000457226 NUP160Q12769 1436 aa23.49■■□□□ 1.35
SMARCA2-216ENST00000457226 TRHP20396 242 aaPredicted RBP23.44■■□□□ 1.34
SMARCA2-216ENST00000457226 CEP170Q5SW79 1584 aa23.42■■□□□ 1.34
SMARCA2-216ENST00000457226 KIF27Q86VH2 1401 aa23.34■■□□□ 1.33
SMARCA2-216ENST00000457226 SHROOM2Q13796 1616 aa23.33■■□□□ 1.33
SMARCA2-216ENST00000457226 ERCC6L2Q5T890 1561 aa23.27■■□□□ 1.32
SMARCA2-216ENST00000457226 JPH4Q96JJ6 628 aa23.26■■□□□ 1.31
SMARCA2-216ENST00000457226 IGF1RP08069 1367 aa23.26■■□□□ 1.31
SMARCA2-216ENST00000457226 PRG4Q92954 1404 aaPredicted RBP23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms