RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 DCAF8L2P0C7V8 631 aa20.47■□□□□ 0.87
UBR4-205ENST00000417040 SUPT5HO00267 1087 aaKnown RBP19.83■□□□□ 0.76
UBR4-205ENST00000417040 EHMT2Q96KQ7 1210 aa19.63■□□□□ 0.73
UBR4-205ENST00000417040 SHROOM4Q9ULL8 1493 aa19.42■□□□□ 0.7
UBR4-205ENST00000417040 PELP1Q8IZL8 1130 aaKnown RBP19.19■□□□□ 0.66
UBR4-205ENST00000417040 PCGF6Q9BYE7 350 aa19.02■□□□□ 0.64
UBR4-205ENST00000417040 TTBK1Q5TCY1 1321 aaPredicted RBP19■□□□□ 0.63
UBR4-205ENST00000417040 FAM9AQ8IZU1 332 aaPredicted RBP18.82■□□□□ 0.6
UBR4-205ENST00000417040 NISCHQ9Y2I1 1504 aa18.76■□□□□ 0.59
UBR4-205ENST00000417040 ERICH6Q7L0X2 663 aa18.72■□□□□ 0.59
UBR4-205ENST00000417040 APLP2Q06481 763 aa18.64■□□□□ 0.58
UBR4-205ENST00000417040 CENPBP07199 599 aaPredicted RBP18.62■□□□□ 0.57
UBR4-205ENST00000417040 YTHDC1Q96MU7 727 aaKnown RBP18.58■□□□□ 0.56
UBR4-205ENST00000417040 RANGAP1P46060 587 aaPredicted RBP18.5■□□□□ 0.55
UBR4-205ENST00000417040 CCER1Q8TC90 406 aaPredicted RBP18.49■□□□□ 0.55
UBR4-205ENST00000417040 ZEB1P37275 1124 aaPredicted RBP18.35■□□□□ 0.53
UBR4-205ENST00000417040 PPARGC1BQ86YN6 1023 aaKnown RBP18.29■□□□□ 0.52
UBR4-205ENST00000417040 MYT1Q01538 1121 aa18.23■□□□□ 0.51
UBR4-205ENST00000417040 ATP1B4Q9UN42 357 aaPredicted RBP18.15■□□□□ 0.5
UBR4-205ENST00000417040 NEFLP07196 543 aa18.14■□□□□ 0.49
UBR4-205ENST00000417040 TRIM41Q8WV44 630 aa18.14■□□□□ 0.49
UBR4-205ENST00000417040 HRCP23327 699 aa18■□□□□ 0.47
UBR4-205ENST00000417040 UBTFP17480 764 aaKnown RBP17.97■□□□□ 0.47
UBR4-205ENST00000417040 TRIM26Q12899 539 aaPredicted RBP17.88■□□□□ 0.45
UBR4-205ENST00000417040 LOC105371045A0A1W2PR82 267 aa17.77■□□□□ 0.44
UBR4-205ENST00000417040 CNGB1Q14028 1251 aaPredicted RBP17.75■□□□□ 0.43
UBR4-205ENST00000417040 ITGAEP38570 1179 aa17.71■□□□□ 0.43
UBR4-205ENST00000417040 POLR3GLQ9BT43 218 aa17.7■□□□□ 0.42
UBR4-205ENST00000417040 DAXXQ9UER7 740 aaPredicted RBP17.68■□□□□ 0.42
UBR4-205ENST00000417040 HNRNPUL2Q1KMD3 747 aaKnown RBP17.61■□□□□ 0.41
UBR4-205ENST00000417040 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.58■□□□□ 0.4
UBR4-205ENST00000417040 DIEXFQ68CQ4 756 aaKnown RBP17.54■□□□□ 0.4
UBR4-205ENST00000417040 BCANQ96GW7 911 aa17.52■□□□□ 0.39
UBR4-205ENST00000417040 GTF3C3Q9Y5Q9 886 aa17.49■□□□□ 0.39
UBR4-205ENST00000417040 RTL5Q5HYW3 569 aaPredicted RBP17.41■□□□□ 0.38
UBR4-205ENST00000417040 CHIC1Q5VXU3 224 aa17.4■□□□□ 0.38
UBR4-205ENST00000417040 ZNF316A6NFI3 1004 aaPredicted RBP17.34■□□□□ 0.37
UBR4-205ENST00000417040 CLSPNQ9HAW4 1339 aa17.25■□□□□ 0.35
UBR4-205ENST00000417040 MYT1LQ9UL68 1186 aa17.22■□□□□ 0.35
UBR4-205ENST00000417040 SLC4A1APQ9BWU0 796 aaKnown RBP17.2■□□□□ 0.34
UBR4-205ENST00000417040 NEUROD1Q13562 356 aa17.17■□□□□ 0.34
UBR4-205ENST00000417040 CDK11AQ9UQ88 783 aaPredicted RBP17.08■□□□□ 0.32
UBR4-205ENST00000417040 ACIN1Q9UKV3 1341 aaKnown RBP17.08■□□□□ 0.32
UBR4-205ENST00000417040 FAM50AQ14320 339 aaKnown RBP17.07■□□□□ 0.32
UBR4-205ENST00000417040 BCL11AQ9H165 835 aa16.98■□□□□ 0.31
UBR4-205ENST00000417040 TRIM52Q96A61 297 aa16.97■□□□□ 0.31
UBR4-205ENST00000417040 ANP32CO43423 234 aa16.95■□□□□ 0.3
UBR4-205ENST00000417040 NPM2Q86SE8 214 aaKnown RBP16.93■□□□□ 0.3
UBR4-205ENST00000417040 ZNF326Q5BKZ1 582 aaKnown RBP16.91■□□□□ 0.3
UBR4-205ENST00000417040 EIF5BO60841 1220 aaKnown RBP16.9■□□□□ 0.3
UBR4-205ENST00000417040 FKBP8Q14318 412 aa16.82■□□□□ 0.28
UBR4-205ENST00000417040 ANP32AP39687 249 aaKnown RBP16.78■□□□□ 0.28
UBR4-205ENST00000417040 SCAF1Q9H7N4 1312 aaKnown RBP16.76■□□□□ 0.27
UBR4-205ENST00000417040 NBR1Q14596 966 aa16.74■□□□□ 0.27
UBR4-205ENST00000417040 CANXP27824 592 aaKnown RBP16.73■□□□□ 0.27
UBR4-205ENST00000417040 ZBTB47Q9UFB7 747 aaPredicted RBP16.64■□□□□ 0.26
UBR4-205ENST00000417040 SLC24A1O60721 1099 aa16.63■□□□□ 0.25
UBR4-205ENST00000417040 ARXQ96QS3 562 aa16.62■□□□□ 0.25
UBR4-205ENST00000417040 ARID3CA6NKF2 412 aa16.58■□□□□ 0.24
UBR4-205ENST00000417040 IRX6P78412 446 aaPredicted RBP16.56■□□□□ 0.24
UBR4-205ENST00000417040 P3H3Q8IVL6 736 aa16.56■□□□□ 0.24
UBR4-205ENST00000417040 SALL2Q9Y467 1007 aaPredicted RBP16.55■□□□□ 0.24
UBR4-205ENST00000417040 HNRNPUQ00839 825 aaKnown RBP eCLIP16.54■□□□□ 0.24
UBR4-205ENST00000417040 FAM9BQ8IZU0 186 aa16.54■□□□□ 0.24
UBR4-205ENST00000417040 DDX10Q13206 875 aaKnown RBP16.53■□□□□ 0.24
UBR4-205ENST00000417040 MIER1Q8N108 512 aa16.46■□□□□ 0.22
UBR4-205ENST00000417040 PABPN1Q86U42 306 aaKnown RBP eCLIP16.45■□□□□ 0.22
UBR4-205ENST00000417040 HSP90AA1P07900 732 aaKnown RBP16.42■□□□□ 0.22
UBR4-205ENST00000417040 ANP32BQ92688 251 aaKnown RBP16.41■□□□□ 0.22
UBR4-205ENST00000417040 HIRIP3Q9BW71 556 aaPredicted RBP16.39■□□□□ 0.22
UBR4-205ENST00000417040 GLIPR1L2Q4G1C9 344 aa16.38■□□□□ 0.21
UBR4-205ENST00000417040 CCDC136Q96JN2 1154 aa16.38■□□□□ 0.21
UBR4-205ENST00000417040 ZNF777Q9ULD5 760 aaPredicted RBP16.35■□□□□ 0.21
UBR4-205ENST00000417040 FBLN2P98095 1184 aa16.33■□□□□ 0.2
UBR4-205ENST00000417040 SENP3-EIF4A1A0A087X0R7 540 aa16.33■□□□□ 0.2
UBR4-205ENST00000417040 NEFMP07197 916 aa16.3■□□□□ 0.2
UBR4-205ENST00000417040 TONSLQ96HA7 1378 aa16.29■□□□□ 0.2
UBR4-205ENST00000417040 RTN4Q9NQC3 1192 aaKnown RBP16.29■□□□□ 0.2
UBR4-205ENST00000417040 UPF2Q9HAU5 1272 aaKnown RBP16.28■□□□□ 0.2
UBR4-205ENST00000417040 CSRNP3Q8WYN3 585 aa16.27■□□□□ 0.19
UBR4-205ENST00000417040 DCAF1Q9Y4B6 1507 aa16.27■□□□□ 0.19
UBR4-205ENST00000417040 ANP32EQ9BTT0 268 aa16.26■□□□□ 0.19
UBR4-205ENST00000417040 MRS2Q9HD23 443 aa16.2■□□□□ 0.18
UBR4-205ENST00000417040 TMC1Q8TDI8 760 aa16.2■□□□□ 0.18
UBR4-205ENST00000417040 CHIC2Q9UKJ5 165 aa16.18■□□□□ 0.18
UBR4-205ENST00000417040 ABCC9O60706 1549 aa16.17■□□□□ 0.18
UBR4-205ENST00000417040 MYO15BQ96JP2 1530 aa16.14■□□□□ 0.17
UBR4-205ENST00000417040 CHGAP10645 457 aaKnown RBP16.13■□□□□ 0.17
UBR4-205ENST00000417040 KDM2AQ9Y2K7 1162 aa16.11■□□□□ 0.17
UBR4-205ENST00000417040 LAS1LQ9Y4W2 734 aaKnown RBP16.11■□□□□ 0.17
UBR4-205ENST00000417040 SUPT16HQ9Y5B9 1047 aaKnown RBP16.09■□□□□ 0.17
UBR4-205ENST00000417040 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.09■□□□□ 0.17
UBR4-205ENST00000417040 TPRNQ4KMQ1 711 aa16.08■□□□□ 0.16
UBR4-205ENST00000417040 WDR43Q15061 677 aaKnown RBP eCLIP16.07■□□□□ 0.163e-6■■□□□ 13.5
UBR4-205ENST00000417040 SENP3Q9H4L4 574 aaPredicted RBP16.05■□□□□ 0.16
UBR4-205ENST00000417040 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.05■□□□□ 0.161e-7■■□□□ 13.9
UBR4-205ENST00000417040 PLPPR3Q6T4P5 718 aa16.04■□□□□ 0.16
UBR4-205ENST00000417040 TRIM44Q96DX7 344 aaPredicted RBP16.03■□□□□ 0.16
UBR4-205ENST00000417040 NCLP19338 710 aaKnown RBP16.01■□□□□ 0.15
UBR4-205ENST00000417040 DDRGK1Q96HY6 314 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms