RNA–Protein interactions for RNA: ENST00000488013.1

HDLBP-242, Transcript of high density lipoprotein binding protein, humanhuman

TSL 2

Gene HDLBP, Length 651 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDLBP-242ENST00000488013 NISCHQ9Y2I1 1504 aa25.65■■□□□ 1.7
HDLBP-242ENST00000488013 AEBP2Q6ZN18 517 aaPredicted RBP24.08■■□□□ 1.45
HDLBP-242ENST00000488013 CHIC1Q5VXU3 224 aa23.39■■□□□ 1.33
HDLBP-242ENST00000488013 CCDC180Q9P1Z9 1646 aa22.51■■□□□ 1.19
HDLBP-242ENST00000488013 ABCC9O60706 1549 aa21.6■■□□□ 1.05
HDLBP-242ENST00000488013 ZCCHC6Q5VYS8 1495 aaKnown RBP21.46■■□□□ 1.03
HDLBP-242ENST00000488013 DCAF1Q9Y4B6 1507 aa21.32■■□□□ 1
HDLBP-242ENST00000488013 DCAF8L2P0C7V8 631 aa21.31■■□□□ 1
HDLBP-242ENST00000488013 MYO15BQ96JP2 1530 aa21.27■■□□□ 1
HDLBP-242ENST00000488013 NACADO15069 1562 aa21.17■□□□□ 0.98
HDLBP-242ENST00000488013 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
HDLBP-242ENST00000488013 PHF23Q9BUL5 403 aaPredicted RBP20.54■□□□□ 0.88
HDLBP-242ENST00000488013 SCRIBQ14160 1630 aa20.53■□□□□ 0.88
HDLBP-242ENST00000488013 SHROOM4Q9ULL8 1493 aa20.5■□□□□ 0.87
HDLBP-242ENST00000488013 SENP3Q9H4L4 574 aaPredicted RBP20.47■□□□□ 0.87
HDLBP-242ENST00000488013 PABPN1Q86U42 306 aaKnown RBP eCLIP20.33■□□□□ 0.853e-7■□□□□ 8.9
HDLBP-242ENST00000488013 BICRAQ9NZM4 1560 aa20.26■□□□□ 0.83
HDLBP-242ENST00000488013 UNC13AQ9UPW8 1703 aa20.25■□□□□ 0.83
HDLBP-242ENST00000488013 BAZ1AQ9NRL2 1556 aaPredicted RBP19.87■□□□□ 0.77
HDLBP-242ENST00000488013 CECR2Q9BXF3 1484 aa19.86■□□□□ 0.77
HDLBP-242ENST00000488013 EIF4G1Q04637 1599 aaKnown RBP19.76■□□□□ 0.75
HDLBP-242ENST00000488013 RSF1Q96T23 1441 aaPredicted RBP19.76■□□□□ 0.75
HDLBP-242ENST00000488013 SMARCA4P51532 1647 aa19.73■□□□□ 0.75
HDLBP-242ENST00000488013 MROH2BQ7Z745 1585 aa19.71■□□□□ 0.75
HDLBP-242ENST00000488013 SUPT5HO00267 1087 aaKnown RBP19.62■□□□□ 0.73
HDLBP-242ENST00000488013 SMARCA2P51531 1590 aa19.61■□□□□ 0.73
HDLBP-242ENST00000488013 ATAD2BQ9ULI0 1458 aa19.6■□□□□ 0.73
HDLBP-242ENST00000488013 PEG3Q9GZU2 1588 aa19.59■□□□□ 0.73
HDLBP-242ENST00000488013 NCAPD3P42695 1498 aa19.57■□□□□ 0.72
HDLBP-242ENST00000488013 CC2D2AQ9P2K1 1620 aa19.52■□□□□ 0.72
HDLBP-242ENST00000488013 BAZ1BQ9UIG0 1483 aaKnown RBP19.47■□□□□ 0.71
HDLBP-242ENST00000488013 HMGXB3Q12766 1538 aa19.45■□□□□ 0.7
HDLBP-242ENST00000488013 WIZO95785 1651 aa19.43■□□□□ 0.7
HDLBP-242ENST00000488013 DNAJC5BQ9UF47 199 aa19.39■□□□□ 0.69
HDLBP-242ENST00000488013 TOP2AP11388 1531 aaKnown RBP19.39■□□□□ 0.69
HDLBP-242ENST00000488013 CCDC88BA6NC98 1476 aa19.17■□□□□ 0.66
HDLBP-242ENST00000488013 CADPSQ9ULU8 1353 aa19.05■□□□□ 0.64
HDLBP-242ENST00000488013 FOXD1Q16676 465 aa19■□□□□ 0.63
HDLBP-242ENST00000488013 CFTRP13569 1480 aa18.99■□□□□ 0.63
HDLBP-242ENST00000488013 PLPPR3Q6T4P5 718 aa18.95■□□□□ 0.62
HDLBP-242ENST00000488013 LAMC3Q9Y6N6 1575 aa18.9■□□□□ 0.62
HDLBP-242ENST00000488013 PDS5BQ9NTI5 1447 aa18.88■□□□□ 0.61
HDLBP-242ENST00000488013 NESP48681 1621 aa18.78■□□□□ 0.6
HDLBP-242ENST00000488013 FANCD2Q9BXW9 1451 aa18.76■□□□□ 0.59
HDLBP-242ENST00000488013 CEP164Q9UPV0 1460 aa18.7■□□□□ 0.58
HDLBP-242ENST00000488013 ERCC6Q03468 1493 aa18.67■□□□□ 0.58
HDLBP-242ENST00000488013 ABCC8Q09428 1581 aa18.64■□□□□ 0.58
HDLBP-242ENST00000488013 WRNQ14191 1432 aaPredicted RBP eCLIP18.64■□□□□ 0.57
HDLBP-242ENST00000488013 PRDM2Q13029 1718 aa18.61■□□□□ 0.57
HDLBP-242ENST00000488013 TRIM41Q8WV44 630 aa18.6■□□□□ 0.57
HDLBP-242ENST00000488013 MRC2Q9UBG0 1479 aa18.57■□□□□ 0.56
HDLBP-242ENST00000488013 DNMBPQ6XZF7 1577 aa18.49■□□□□ 0.55
HDLBP-242ENST00000488013 TOPBP1Q92547 1522 aa18.48■□□□□ 0.55
HDLBP-242ENST00000488013 CUX1P39880 1505 aa18.47■□□□□ 0.55
HDLBP-242ENST00000488013 URB2Q14146 1524 aaKnown RBP18.47■□□□□ 0.55
HDLBP-242ENST00000488013 KIF21AQ7Z4S6 1674 aa18.46■□□□□ 0.55
HDLBP-242ENST00000488013 TOP2BQ02880 1626 aa18.45■□□□□ 0.54
HDLBP-242ENST00000488013 WDR62O43379 1518 aa18.44■□□□□ 0.54
HDLBP-242ENST00000488013 SYNJ1O43426 1573 aa18.41■□□□□ 0.54
HDLBP-242ENST00000488013 BIVM-ERCC5R4GMW8 1640 aa18.38■□□□□ 0.53
HDLBP-242ENST00000488013 DNAJC5Q9H3Z4 198 aa18.37■□□□□ 0.53
HDLBP-242ENST00000488013 FGD5Q6ZNL6 1462 aa18.37■□□□□ 0.53
HDLBP-242ENST00000488013 THOC2Q8NI27 1593 aaKnown RBP18.37■□□□□ 0.53
HDLBP-242ENST00000488013 SOGA1O94964 1423 aa18.36■□□□□ 0.53
HDLBP-242ENST00000488013 POLA1P09884 1462 aaPredicted RBP18.36■□□□□ 0.53
HDLBP-242ENST00000488013 CUX2O14529 1486 aa18.33■□□□□ 0.52
HDLBP-242ENST00000488013 IFT140Q96RY7 1462 aa18.33■□□□□ 0.52
HDLBP-242ENST00000488013 EEA1Q15075 1411 aa18.28■□□□□ 0.52
HDLBP-242ENST00000488013 KIF27Q86VH2 1401 aa18.27■□□□□ 0.52
HDLBP-242ENST00000488013 ABCA10Q8WWZ4 1543 aa18.27■□□□□ 0.51
HDLBP-242ENST00000488013 RAD54L2Q9Y4B4 1467 aa18.24■□□□□ 0.51
HDLBP-242ENST00000488013 PPP6R1Q9UPN7 881 aa18.18■□□□□ 0.5
HDLBP-242ENST00000488013 WDR97A6NE52 1622 aa18.17■□□□□ 0.5
HDLBP-242ENST00000488013 ADRA2BP18089 450 aa18.17■□□□□ 0.5
HDLBP-242ENST00000488013 TDRD9Q8NDG6 1382 aaKnown RBP18.17■□□□□ 0.5
HDLBP-242ENST00000488013 CSRNP3Q8WYN3 585 aa18.16■□□□□ 0.5
HDLBP-242ENST00000488013 TARBP1Q13395 1621 aaKnown RBP18.16■□□□□ 0.5
HDLBP-242ENST00000488013 GAPVD1Q14C86 1478 aa18.14■□□□□ 0.49
HDLBP-242ENST00000488013 IGF1RP08069 1367 aa18.1■□□□□ 0.49
HDLBP-242ENST00000488013 GRIN2BQ13224 1484 aa18.09■□□□□ 0.49
HDLBP-242ENST00000488013 FAM9AQ8IZU1 332 aaPredicted RBP18.09■□□□□ 0.49
HDLBP-242ENST00000488013 AQRO60306 1485 aaKnown RBP eCLIP18.08■□□□□ 0.495e-10■■■■■ 40.2
HDLBP-242ENST00000488013 ZNF608Q9ULD9 1512 aaPredicted RBP18.08■□□□□ 0.48
HDLBP-242ENST00000488013 ERICH3Q5RHP9 1530 aa18.06■□□□□ 0.48
HDLBP-242ENST00000488013 RUSC2Q8N2Y8 1516 aa18.04■□□□□ 0.48
HDLBP-242ENST00000488013 ABCA5Q8WWZ7 1642 aa18.04■□□□□ 0.48
HDLBP-242ENST00000488013 CARMIL1Q5VZK9 1371 aa18.02■□□□□ 0.47
HDLBP-242ENST00000488013 MAGI1Q96QZ7 1491 aaPredicted RBP18■□□□□ 0.47
HDLBP-242ENST00000488013 FHAD1B1AJZ9 1412 aa17.98■□□□□ 0.47
HDLBP-242ENST00000488013 PRXQ9BXM0 1461 aa17.98■□□□□ 0.47
HDLBP-242ENST00000488013 EIF4G3O43432 1585 aaKnown RBP17.98■□□□□ 0.47
HDLBP-242ENST00000488013 CHMP7Q8WUX9 453 aaPredicted RBP17.94■□□□□ 0.46
HDLBP-242ENST00000488013 RAPGEF2Q9Y4G8 1499 aa17.94■□□□□ 0.46
HDLBP-242ENST00000488013 SNAPC4Q5SXM2 1469 aa17.93■□□□□ 0.46
HDLBP-242ENST00000488013 PIAS4Q8N2W9 510 aaPredicted RBP17.92■□□□□ 0.46
HDLBP-242ENST00000488013 CUL7Q14999 1698 aa17.92■□□□□ 0.46
HDLBP-242ENST00000488013 SYNJ2O15056 1496 aa17.9■□□□□ 0.46
HDLBP-242ENST00000488013 GOLGA3Q08378 1498 aa17.9■□□□□ 0.46
HDLBP-242ENST00000488013 KIF21BO75037 1637 aa17.87■□□□□ 0.45
HDLBP-242ENST00000488013 UBTFP17480 764 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms