RNA–Protein interactions for RNA: ENST00000636903.1

SMARCA2-254, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, humanhuman

TSL 5 BASIC

Gene SMARCA2, Length 2,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA2-254ENST00000636903 NISCHQ9Y2I1 1504 aa30.66■■■□□ 2.5
SMARCA2-254ENST00000636903 CCDC180Q9P1Z9 1646 aa26.47■■□□□ 1.83
SMARCA2-254ENST00000636903 DCAF8L2P0C7V8 631 aa25.81■■□□□ 1.72
SMARCA2-254ENST00000636903 ZCCHC6Q5VYS8 1495 aaKnown RBP25.73■■□□□ 1.71
SMARCA2-254ENST00000636903 SHROOM4Q9ULL8 1493 aa25.55■■□□□ 1.68
SMARCA2-254ENST00000636903 ABCC9O60706 1549 aa25.48■■□□□ 1.67
SMARCA2-254ENST00000636903 DCAF1Q9Y4B6 1507 aa25.1■■□□□ 1.61
SMARCA2-254ENST00000636903 SCRIBQ14160 1630 aa24.74■■□□□ 1.55
SMARCA2-254ENST00000636903 MYO15BQ96JP2 1530 aa24.72■■□□□ 1.55
SMARCA2-254ENST00000636903 NACADO15069 1562 aa24.71■■□□□ 1.55
SMARCA2-254ENST00000636903 SUPT5HO00267 1087 aaKnown RBP24.57■■□□□ 1.52
SMARCA2-254ENST00000636903 RB1CC1Q8TDY2 1594 aa24.55■■□□□ 1.52
SMARCA2-254ENST00000636903 PABPN1Q86U42 306 aaKnown RBP eCLIP24.2■■□□□ 1.46
SMARCA2-254ENST00000636903 UNC13AQ9UPW8 1703 aa24.19■■□□□ 1.46
SMARCA2-254ENST00000636903 CECR2Q9BXF3 1484 aa24.05■■□□□ 1.44
SMARCA2-254ENST00000636903 BICRAQ9NZM4 1560 aa23.95■■□□□ 1.42
SMARCA2-254ENST00000636903 RSF1Q96T23 1441 aaPredicted RBP23.9■■□□□ 1.42
SMARCA2-254ENST00000636903 MROH2BQ7Z745 1585 aa23.83■■□□□ 1.41
SMARCA2-254ENST00000636903 WIZO95785 1651 aa23.65■■□□□ 1.38
SMARCA2-254ENST00000636903 BAZ1AQ9NRL2 1556 aaPredicted RBP23.6■■□□□ 1.37
SMARCA2-254ENST00000636903 SMARCA4P51532 1647 aa23.55■■□□□ 1.36
SMARCA2-254ENST00000636903 CHIC1Q5VXU3 224 aa23.36■■□□□ 1.33
SMARCA2-254ENST00000636903 EIF4G1Q04637 1599 aaKnown RBP23.21■■□□□ 1.31
SMARCA2-254ENST00000636903 TOP2AP11388 1531 aaKnown RBP23.21■■□□□ 1.31
SMARCA2-254ENST00000636903 ATAD2BQ9ULI0 1458 aa23.2■■□□□ 1.31
SMARCA2-254ENST00000636903 CCDC88BA6NC98 1476 aa23.13■■□□□ 1.29
SMARCA2-254ENST00000636903 PEG3Q9GZU2 1588 aa23.11■■□□□ 1.29
SMARCA2-254ENST00000636903 BAZ1BQ9UIG0 1483 aaKnown RBP23.08■■□□□ 1.29
SMARCA2-254ENST00000636903 SMARCA2P51531 1590 aa23.07■■□□□ 1.28
SMARCA2-254ENST00000636903 TRIM41Q8WV44 630 aa22.9■■□□□ 1.26
SMARCA2-254ENST00000636903 CC2D2AQ9P2K1 1620 aa22.9■■□□□ 1.26
SMARCA2-254ENST00000636903 NCAPD3P42695 1498 aa22.89■■□□□ 1.26
SMARCA2-254ENST00000636903 ABCC8Q09428 1581 aa22.79■■□□□ 1.24
SMARCA2-254ENST00000636903 HMGXB3Q12766 1538 aa22.79■■□□□ 1.24
SMARCA2-254ENST00000636903 FAM9AQ8IZU1 332 aaPredicted RBP22.76■■□□□ 1.23
SMARCA2-254ENST00000636903 DNAJC5BQ9UF47 199 aa22.75■■□□□ 1.23
SMARCA2-254ENST00000636903 LOC105371045A0A1W2PR82 267 aa22.69■■□□□ 1.22
SMARCA2-254ENST00000636903 EHMT2Q96KQ7 1210 aa22.66■■□□□ 1.22
SMARCA2-254ENST00000636903 WRNQ14191 1432 aaPredicted RBP eCLIP22.47■■□□□ 1.19
SMARCA2-254ENST00000636903 CFTRP13569 1480 aa22.45■■□□□ 1.18
SMARCA2-254ENST00000636903 SYNJ1O43426 1573 aa22.43■■□□□ 1.18
SMARCA2-254ENST00000636903 NESP48681 1621 aa22.41■■□□□ 1.18
SMARCA2-254ENST00000636903 CADPSQ9ULU8 1353 aa22.41■■□□□ 1.18
SMARCA2-254ENST00000636903 SOGA1O94964 1423 aa22.38■■□□□ 1.17
SMARCA2-254ENST00000636903 RUSC2Q8N2Y8 1516 aa22.34■■□□□ 1.17
SMARCA2-254ENST00000636903 CUX1P39880 1505 aa22.24■■□□□ 1.15
SMARCA2-254ENST00000636903 FANCD2Q9BXW9 1451 aa22.19■■□□□ 1.14
SMARCA2-254ENST00000636903 TOP2BQ02880 1626 aa22.19■■□□□ 1.14
SMARCA2-254ENST00000636903 PRDM2Q13029 1718 aa22.16■■□□□ 1.14
SMARCA2-254ENST00000636903 CSRNP3Q8WYN3 585 aa22.12■■□□□ 1.13
SMARCA2-254ENST00000636903 BIVM-ERCC5R4GMW8 1640 aa22.11■■□□□ 1.13
SMARCA2-254ENST00000636903 LAMC3Q9Y6N6 1575 aa22.06■■□□□ 1.12
SMARCA2-254ENST00000636903 CEP164Q9UPV0 1460 aa21.99■■□□□ 1.11
SMARCA2-254ENST00000636903 FGD5Q6ZNL6 1462 aa21.99■■□□□ 1.11
SMARCA2-254ENST00000636903 UBTFP17480 764 aaKnown RBP21.98■■□□□ 1.11
SMARCA2-254ENST00000636903 KIF21AQ7Z4S6 1674 aa21.98■■□□□ 1.11
SMARCA2-254ENST00000636903 PDS5BQ9NTI5 1447 aa21.97■■□□□ 1.11
SMARCA2-254ENST00000636903 EEA1Q15075 1411 aa21.95■■□□□ 1.11
SMARCA2-254ENST00000636903 URB2Q14146 1524 aaKnown RBP21.94■■□□□ 1.1
SMARCA2-254ENST00000636903 TOPBP1Q92547 1522 aa21.94■■□□□ 1.1
SMARCA2-254ENST00000636903 RAD54L2Q9Y4B4 1467 aa21.93■■□□□ 1.1
SMARCA2-254ENST00000636903 RANGAP1P46060 587 aaPredicted RBP21.9■■□□□ 1.1
SMARCA2-254ENST00000636903 CUX2O14529 1486 aa21.89■■□□□ 1.09
SMARCA2-254ENST00000636903 DNMBPQ6XZF7 1577 aa21.89■■□□□ 1.09
SMARCA2-254ENST00000636903 POLA1P09884 1462 aaPredicted RBP21.87■■□□□ 1.09
SMARCA2-254ENST00000636903 RAPGEF2Q9Y4G8 1499 aa21.86■■□□□ 1.09
SMARCA2-254ENST00000636903 KIF27Q86VH2 1401 aa21.84■■□□□ 1.09
SMARCA2-254ENST00000636903 GOLGA3Q08378 1498 aa21.81■■□□□ 1.08
SMARCA2-254ENST00000636903 PPARGC1BQ86YN6 1023 aaKnown RBP21.79■■□□□ 1.08
SMARCA2-254ENST00000636903 CEP162Q5TB80 1403 aa21.76■■□□□ 1.07
SMARCA2-254ENST00000636903 TNIKQ9UKE5 1360 aa21.76■■□□□ 1.07
SMARCA2-254ENST00000636903 TDRD9Q8NDG6 1382 aaKnown RBP21.75■■□□□ 1.07
SMARCA2-254ENST00000636903 IGF1RP08069 1367 aa21.74■■□□□ 1.07
SMARCA2-254ENST00000636903 ERCC6Q03468 1493 aa21.74■■□□□ 1.07
SMARCA2-254ENST00000636903 KIF21BO75037 1637 aa21.74■■□□□ 1.07
SMARCA2-254ENST00000636903 PRXQ9BXM0 1461 aa21.71■■□□□ 1.07
SMARCA2-254ENST00000636903 MRC2Q9UBG0 1479 aa21.69■■□□□ 1.06
SMARCA2-254ENST00000636903 ABCA10Q8WWZ4 1543 aa21.68■■□□□ 1.06
SMARCA2-254ENST00000636903 PCGF6Q9BYE7 350 aa21.66■■□□□ 1.06
SMARCA2-254ENST00000636903 TTBK1Q5TCY1 1321 aaPredicted RBP21.64■■□□□ 1.05
SMARCA2-254ENST00000636903 CARMIL1Q5VZK9 1371 aa21.62■■□□□ 1.05
SMARCA2-254ENST00000636903 AQRO60306 1485 aaKnown RBP eCLIP21.58■■□□□ 1.051e-10■■■■■ 53.5
SMARCA2-254ENST00000636903 CLIP1P30622 1438 aa21.57■■□□□ 1.04
SMARCA2-254ENST00000636903 TARBP1Q13395 1621 aaKnown RBP21.56■■□□□ 1.04
SMARCA2-254ENST00000636903 ERICH3Q5RHP9 1530 aa21.56■■□□□ 1.04
SMARCA2-254ENST00000636903 WDR97A6NE52 1622 aa21.56■■□□□ 1.04
SMARCA2-254ENST00000636903 ZNF608Q9ULD9 1512 aaPredicted RBP21.54■■□□□ 1.04
SMARCA2-254ENST00000636903 GAPVD1Q14C86 1478 aa21.54■■□□□ 1.04
SMARCA2-254ENST00000636903 WDR62O43379 1518 aa21.54■■□□□ 1.04
SMARCA2-254ENST00000636903 THOC2Q8NI27 1593 aaKnown RBP21.51■■□□□ 1.03
SMARCA2-254ENST00000636903 ABCA5Q8WWZ7 1642 aa21.49■■□□□ 1.03
SMARCA2-254ENST00000636903 P3H3Q8IVL6 736 aa21.42■■□□□ 1.02
SMARCA2-254ENST00000636903 IFT140Q96RY7 1462 aa21.4■■□□□ 1.02
SMARCA2-254ENST00000636903 TRIM26Q12899 539 aaPredicted RBP21.38■■□□□ 1.01
SMARCA2-254ENST00000636903 ARAP1Q96P48 1450 aa21.36■■□□□ 1.01
SMARCA2-254ENST00000636903 CUL7Q14999 1698 aa21.35■■□□□ 1.01
SMARCA2-254ENST00000636903 PBRM1Q86U86 1689 aa21.34■■□□□ 1.01
SMARCA2-254ENST00000636903 ARHGAP35Q9NRY4 1499 aa21.33■■□□□ 1.01
SMARCA2-254ENST00000636903 VPS8Q8N3P4 1428 aa21.31■■□□□ 1
SMARCA2-254ENST00000636903 EIF4G3O43432 1585 aaKnown RBP21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms