RNA–Protein interactions for RNA: ENST00000612795.1

CSNK1E-215, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-215ENST00000612795 NISCHQ9Y2I1 1504 aa43.87■■■■■ 4.61
CSNK1E-215ENST00000612795 ABCC9O60706 1549 aa40.07■■■■■ 4.01
CSNK1E-215ENST00000612795 CCDC180Q9P1Z9 1646 aa39.71■■■■□ 3.95
CSNK1E-215ENST00000612795 RB1CC1Q8TDY2 1594 aa37.98■■■■□ 3.67
CSNK1E-215ENST00000612795 DNAJC5BQ9UF47 199 aa37.86■■■■□ 3.65
CSNK1E-215ENST00000612795 NACADO15069 1562 aa37.57■■■■□ 3.6
CSNK1E-215ENST00000612795 UNC13AQ9UPW8 1703 aa37.22■■■■□ 3.55
CSNK1E-215ENST00000612795 DCAF8L2P0C7V8 631 aa37.2■■■■□ 3.55
CSNK1E-215ENST00000612795 PABPN1Q86U42 306 aaKnown RBP eCLIP37.14■■■■□ 3.54
CSNK1E-215ENST00000612795 BICRAQ9NZM4 1560 aa36.84■■■■□ 3.49
CSNK1E-215ENST00000612795 MYO15BQ96JP2 1530 aa36.84■■■■□ 3.49
CSNK1E-215ENST00000612795 SHROOM4Q9ULL8 1493 aa36.31■■■■□ 3.4
CSNK1E-215ENST00000612795 ZCCHC6Q5VYS8 1495 aaKnown RBP36.27■■■■□ 3.4
CSNK1E-215ENST00000612795 CC2D2AQ9P2K1 1620 aa36.22■■■■□ 3.39
CSNK1E-215ENST00000612795 DCAF1Q9Y4B6 1507 aa36.2■■■■□ 3.39
CSNK1E-215ENST00000612795 CECR2Q9BXF3 1484 aa36.14■■■■□ 3.38
CSNK1E-215ENST00000612795 SCRIBQ14160 1630 aa36.12■■■■□ 3.37
CSNK1E-215ENST00000612795 EIF4G1Q04637 1599 aaKnown RBP36.01■■■■□ 3.35
CSNK1E-215ENST00000612795 DNAJC5Q9H3Z4 198 aa35.16■■■■□ 3.22
CSNK1E-215ENST00000612795 CUX2O14529 1486 aa34.74■■■■□ 3.15
CSNK1E-215ENST00000612795 ERCC6Q03468 1493 aa34.68■■■■□ 3.14
CSNK1E-215ENST00000612795 NCAPD3P42695 1498 aa34.61■■■■□ 3.13
CSNK1E-215ENST00000612795 ATAD2BQ9ULI0 1458 aa34.46■■■■□ 3.11
CSNK1E-215ENST00000612795 SMARCA2P51531 1590 aa34.41■■■■□ 3.1
CSNK1E-215ENST00000612795 HMGXB3Q12766 1538 aa34.4■■■■□ 3.1
CSNK1E-215ENST00000612795 SMARCA4P51532 1647 aa34.39■■■■□ 3.1
CSNK1E-215ENST00000612795 NESP48681 1621 aa34.26■■■■□ 3.08
CSNK1E-215ENST00000612795 BAZ1BQ9UIG0 1483 aaKnown RBP34.16■■■■□ 3.06
CSNK1E-215ENST00000612795 BAZ1AQ9NRL2 1556 aaPredicted RBP34.13■■■■□ 3.05
CSNK1E-215ENST00000612795 THOC2Q8NI27 1593 aaKnown RBP34.11■■■■□ 3.05
CSNK1E-215ENST00000612795 PEG3Q9GZU2 1588 aa34.02■■■■□ 3.04
CSNK1E-215ENST00000612795 LAMC3Q9Y6N6 1575 aa34.02■■■■□ 3.04
CSNK1E-215ENST00000612795 KIF21AQ7Z4S6 1674 aa33.95■■■■□ 3.03
CSNK1E-215ENST00000612795 MROH2BQ7Z745 1585 aa33.79■■■■□ 3
CSNK1E-215ENST00000612795 PDS5BQ9NTI5 1447 aa33.77■■■■□ 3
CSNK1E-215ENST00000612795 MRC2Q9UBG0 1479 aa33.55■■■□□ 2.96
CSNK1E-215ENST00000612795 CADPSQ9ULU8 1353 aa33.53■■■□□ 2.96
CSNK1E-215ENST00000612795 TRIM41Q8WV44 630 aa33.51■■■□□ 2.95
CSNK1E-215ENST00000612795 WDR62O43379 1518 aa33.49■■■□□ 2.95
CSNK1E-215ENST00000612795 WIZO95785 1651 aa33.43■■■□□ 2.94
CSNK1E-215ENST00000612795 CEP164Q9UPV0 1460 aa33.33■■■□□ 2.93
CSNK1E-215ENST00000612795 FANCD2Q9BXW9 1451 aa33.21■■■□□ 2.91
CSNK1E-215ENST00000612795 CFTRP13569 1480 aa33.07■■■□□ 2.88
CSNK1E-215ENST00000612795 OSCARQ8IYS5 282 aa32.99■■■□□ 2.87
CSNK1E-215ENST00000612795 TOP2AP11388 1531 aaKnown RBP32.96■■■□□ 2.87
CSNK1E-215ENST00000612795 URB2Q14146 1524 aaKnown RBP32.96■■■□□ 2.87
CSNK1E-215ENST00000612795 PRDM2Q13029 1718 aa32.94■■■□□ 2.86
CSNK1E-215ENST00000612795 RSF1Q96T23 1441 aaPredicted RBP32.86■■■□□ 2.85
CSNK1E-215ENST00000612795 RIMBP3CA6NJZ7 1639 aa32.76■■■□□ 2.83
CSNK1E-215ENST00000612795 RIMBP3BA6NNM3 1639 aa32.76■■■□□ 2.83
CSNK1E-215ENST00000612795 RIMBP3Q9UFD9 1639 aa32.76■■■□□ 2.83
CSNK1E-215ENST00000612795 IFT140Q96RY7 1462 aa32.65■■■□□ 2.82
CSNK1E-215ENST00000612795 ZNF608Q9ULD9 1512 aaPredicted RBP32.62■■■□□ 2.81
CSNK1E-215ENST00000612795 ARHGEF11O15085 1522 aa32.56■■■□□ 2.8
CSNK1E-215ENST00000612795 TOPBP1Q92547 1522 aa32.54■■■□□ 2.8
CSNK1E-215ENST00000612795 EIF4G3O43432 1585 aaKnown RBP32.53■■■□□ 2.8
CSNK1E-215ENST00000612795 CCDC88BA6NC98 1476 aa32.52■■■□□ 2.8
CSNK1E-215ENST00000612795 ABCC8Q09428 1581 aa32.44■■■□□ 2.78
CSNK1E-215ENST00000612795 CHD1O14646 1710 aa32.43■■■□□ 2.78
CSNK1E-215ENST00000612795 DNMBPQ6XZF7 1577 aa32.42■■■□□ 2.78
CSNK1E-215ENST00000612795 TARBP1Q13395 1621 aaKnown RBP32.31■■■□□ 2.76
CSNK1E-215ENST00000612795 CYB5RLQ6IPT4 315 aa32.27■■■□□ 2.76
CSNK1E-215ENST00000612795 AQRO60306 1485 aaKnown RBP eCLIP32.24■■■□□ 2.757e-13■■■■□ 21.7
CSNK1E-215ENST00000612795 ARAP1Q96P48 1450 aa32.19■■■□□ 2.74
CSNK1E-215ENST00000612795 POLA1P09884 1462 aaPredicted RBP32.16■■■□□ 2.74
CSNK1E-215ENST00000612795 FBLN2P98095 1184 aa32.15■■■□□ 2.74
CSNK1E-215ENST00000612795 TRHP20396 242 aaPredicted RBP32.12■■■□□ 2.73
CSNK1E-215ENST00000612795 RAD54L2Q9Y4B4 1467 aa32.03■■■□□ 2.72
CSNK1E-215ENST00000612795 WDR97A6NE52 1622 aa31.99■■■□□ 2.71
CSNK1E-215ENST00000612795 SOGA1O94964 1423 aa31.97■■■□□ 2.71
CSNK1E-215ENST00000612795 SNAPC4Q5SXM2 1469 aa31.97■■■□□ 2.71
CSNK1E-215ENST00000612795 TDRD9Q8NDG6 1382 aaKnown RBP31.96■■■□□ 2.71
CSNK1E-215ENST00000612795 CLASP1Q7Z460 1538 aa31.94■■■□□ 2.7
CSNK1E-215ENST00000612795 SYNJ1O43426 1573 aa31.92■■■□□ 2.7
CSNK1E-215ENST00000612795 FGD5Q6ZNL6 1462 aa31.91■■■□□ 2.7
CSNK1E-215ENST00000612795 MAGI1Q96QZ7 1491 aaPredicted RBP31.86■■■□□ 2.69
CSNK1E-215ENST00000612795 CHMP7Q8WUX9 453 aaPredicted RBP31.82■■■□□ 2.68
CSNK1E-215ENST00000612795 CUX1P39880 1505 aa31.8■■■□□ 2.68
CSNK1E-215ENST00000612795 GRIN2BQ13224 1484 aa31.78■■■□□ 2.68
CSNK1E-215ENST00000612795 PBRM1Q86U86 1689 aa31.78■■■□□ 2.68
CSNK1E-215ENST00000612795 SYNJ2O15056 1496 aa31.75■■■□□ 2.67
CSNK1E-215ENST00000612795 GAPVD1Q14C86 1478 aa31.61■■■□□ 2.65
CSNK1E-215ENST00000612795 ABCA5Q8WWZ7 1642 aa31.57■■■□□ 2.64
CSNK1E-215ENST00000612795 AEBP2Q6ZN18 517 aaPredicted RBP31.56■■■□□ 2.64
CSNK1E-215ENST00000612795 ABCA10Q8WWZ4 1543 aa31.5■■■□□ 2.63
CSNK1E-215ENST00000612795 GRIN2AQ12879 1464 aa31.4■■■□□ 2.62
CSNK1E-215ENST00000612795 ERCC6L2Q5T890 1561 aa31.39■■■□□ 2.61
CSNK1E-215ENST00000612795 ADAMTS12P58397 1594 aa31.38■■■□□ 2.61
CSNK1E-215ENST00000612795 CEP170Q5SW79 1584 aa31.33■■■□□ 2.61
CSNK1E-215ENST00000612795 NUP160Q12769 1436 aa31.27■■■□□ 2.6
CSNK1E-215ENST00000612795 WRNQ14191 1432 aaPredicted RBP eCLIP31.26■■■□□ 2.6
CSNK1E-215ENST00000612795 SHROOM2Q13796 1616 aa31.26■■■□□ 2.59
CSNK1E-215ENST00000612795 BIVM-ERCC5R4GMW8 1640 aa31.24■■■□□ 2.59
CSNK1E-215ENST00000612795 TOP2BQ02880 1626 aa31.2■■■□□ 2.58
CSNK1E-215ENST00000612795 KIF13AQ9H1H9 1805 aa31.19■■■□□ 2.58
CSNK1E-215ENST00000612795 FHAD1B1AJZ9 1412 aa31.17■■■□□ 2.58
CSNK1E-215ENST00000612795 ERICH3Q5RHP9 1530 aa31.13■■■□□ 2.57
CSNK1E-215ENST00000612795 SUPT5HO00267 1087 aaKnown RBP31.06■■■□□ 2.56
CSNK1E-215ENST00000612795 PRG4Q92954 1404 aaPredicted RBP31.01■■■□□ 2.55
CSNK1E-215ENST00000612795 RUSC2Q8N2Y8 1516 aa30.96■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms