RNA–Protein interactions for RNA: ENST00000442216.1

CSNK1E-210, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 787 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-210ENST00000442216 NISCHQ9Y2I1 1504 aa36.47■■■■□ 3.43
CSNK1E-210ENST00000442216 CCDC180Q9P1Z9 1646 aa32.48■■■□□ 2.79
CSNK1E-210ENST00000442216 ABCC9O60706 1549 aa31.54■■■□□ 2.64
CSNK1E-210ENST00000442216 NACADO15069 1562 aa30.49■■■□□ 2.47
CSNK1E-210ENST00000442216 RB1CC1Q8TDY2 1594 aa30.49■■■□□ 2.47
CSNK1E-210ENST00000442216 ZCCHC6Q5VYS8 1495 aaKnown RBP30.39■■■□□ 2.46
CSNK1E-210ENST00000442216 MYO15BQ96JP2 1530 aa30.37■■■□□ 2.45
CSNK1E-210ENST00000442216 DCAF8L2P0C7V8 631 aa30.3■■■□□ 2.44
CSNK1E-210ENST00000442216 DCAF1Q9Y4B6 1507 aa30.25■■■□□ 2.43
CSNK1E-210ENST00000442216 UNC13AQ9UPW8 1703 aa29.84■■■□□ 2.37
CSNK1E-210ENST00000442216 BICRAQ9NZM4 1560 aa29.53■■■□□ 2.32
CSNK1E-210ENST00000442216 SCRIBQ14160 1630 aa29.51■■■□□ 2.31
CSNK1E-210ENST00000442216 PABPN1Q86U42 306 aaKnown RBP eCLIP29.44■■■□□ 2.3
CSNK1E-210ENST00000442216 SHROOM4Q9ULL8 1493 aa29.31■■■□□ 2.28
CSNK1E-210ENST00000442216 DNAJC5BQ9UF47 199 aa28.84■■■□□ 2.21
CSNK1E-210ENST00000442216 EIF4G1Q04637 1599 aaKnown RBP28.74■■■□□ 2.19
CSNK1E-210ENST00000442216 CC2D2AQ9P2K1 1620 aa28.61■■■□□ 2.17
CSNK1E-210ENST00000442216 CECR2Q9BXF3 1484 aa28.36■■■□□ 2.13
CSNK1E-210ENST00000442216 SMARCA4P51532 1647 aa28.29■■■□□ 2.12
CSNK1E-210ENST00000442216 BAZ1AQ9NRL2 1556 aaPredicted RBP28.28■■■□□ 2.12
CSNK1E-210ENST00000442216 SMARCA2P51531 1590 aa28.11■■■□□ 2.09
CSNK1E-210ENST00000442216 NCAPD3P42695 1498 aa28.09■■■□□ 2.09
CSNK1E-210ENST00000442216 ATAD2BQ9ULI0 1458 aa28.09■■■□□ 2.09
CSNK1E-210ENST00000442216 MROH2BQ7Z745 1585 aa28.07■■■□□ 2.08
CSNK1E-210ENST00000442216 PEG3Q9GZU2 1588 aa28.07■■■□□ 2.08
CSNK1E-210ENST00000442216 HMGXB3Q12766 1538 aa27.99■■■□□ 2.07
CSNK1E-210ENST00000442216 BAZ1BQ9UIG0 1483 aaKnown RBP27.87■■■□□ 2.05
CSNK1E-210ENST00000442216 WIZO95785 1651 aa27.8■■■□□ 2.04
CSNK1E-210ENST00000442216 RSF1Q96T23 1441 aaPredicted RBP27.77■■■□□ 2.04
CSNK1E-210ENST00000442216 TOP2AP11388 1531 aaKnown RBP27.52■■■□□ 2
CSNK1E-210ENST00000442216 LAMC3Q9Y6N6 1575 aa27.37■■□□□ 1.97
CSNK1E-210ENST00000442216 NESP48681 1621 aa27.32■■□□□ 1.96
CSNK1E-210ENST00000442216 CADPSQ9ULU8 1353 aa27.25■■□□□ 1.95
CSNK1E-210ENST00000442216 ERCC6Q03468 1493 aa27.2■■□□□ 1.95
CSNK1E-210ENST00000442216 CCDC88BA6NC98 1476 aa27.16■■□□□ 1.94
CSNK1E-210ENST00000442216 PDS5BQ9NTI5 1447 aa27.15■■□□□ 1.94
CSNK1E-210ENST00000442216 CFTRP13569 1480 aa27.13■■□□□ 1.93
CSNK1E-210ENST00000442216 KIF21AQ7Z4S6 1674 aa27.08■■□□□ 1.93
CSNK1E-210ENST00000442216 PRDM2Q13029 1718 aa27.04■■□□□ 1.92
CSNK1E-210ENST00000442216 SUPT5HO00267 1087 aaKnown RBP27.04■■□□□ 1.92
CSNK1E-210ENST00000442216 THOC2Q8NI27 1593 aaKnown RBP26.97■■□□□ 1.91
CSNK1E-210ENST00000442216 CUX2O14529 1486 aa26.96■■□□□ 1.91
CSNK1E-210ENST00000442216 FANCD2Q9BXW9 1451 aa26.93■■□□□ 1.9
CSNK1E-210ENST00000442216 CEP164Q9UPV0 1460 aa26.9■■□□□ 1.9
CSNK1E-210ENST00000442216 MRC2Q9UBG0 1479 aa26.85■■□□□ 1.89
CSNK1E-210ENST00000442216 WDR62O43379 1518 aa26.79■■□□□ 1.88
CSNK1E-210ENST00000442216 URB2Q14146 1524 aaKnown RBP26.65■■□□□ 1.86
CSNK1E-210ENST00000442216 ABCC8Q09428 1581 aa26.59■■□□□ 1.85
CSNK1E-210ENST00000442216 DNMBPQ6XZF7 1577 aa26.52■■□□□ 1.84
CSNK1E-210ENST00000442216 TOPBP1Q92547 1522 aa26.52■■□□□ 1.84
CSNK1E-210ENST00000442216 IFT140Q96RY7 1462 aa26.35■■□□□ 1.81
CSNK1E-210ENST00000442216 CUX1P39880 1505 aa26.34■■□□□ 1.81
CSNK1E-210ENST00000442216 POLA1P09884 1462 aaPredicted RBP26.29■■□□□ 1.8
CSNK1E-210ENST00000442216 TARBP1Q13395 1621 aaKnown RBP26.25■■□□□ 1.79
CSNK1E-210ENST00000442216 FGD5Q6ZNL6 1462 aa26.23■■□□□ 1.79
CSNK1E-210ENST00000442216 BIVM-ERCC5R4GMW8 1640 aa26.2■■□□□ 1.78
CSNK1E-210ENST00000442216 WRNQ14191 1432 aaPredicted RBP eCLIP26.2■■□□□ 1.78
CSNK1E-210ENST00000442216 SOGA1O94964 1423 aa26.18■■□□□ 1.78
CSNK1E-210ENST00000442216 TOP2BQ02880 1626 aa26.17■■□□□ 1.78
CSNK1E-210ENST00000442216 ZNF608Q9ULD9 1512 aaPredicted RBP26.16■■□□□ 1.78
CSNK1E-210ENST00000442216 RAD54L2Q9Y4B4 1467 aa26.14■■□□□ 1.78
CSNK1E-210ENST00000442216 WDR97A6NE52 1622 aa26.13■■□□□ 1.77
CSNK1E-210ENST00000442216 SYNJ1O43426 1573 aa26.12■■□□□ 1.77
CSNK1E-210ENST00000442216 EIF4G3O43432 1585 aaKnown RBP26.12■■□□□ 1.77
CSNK1E-210ENST00000442216 AQRO60306 1485 aaKnown RBP eCLIP26.02■■□□□ 1.767e-13■■■■■ 37
CSNK1E-210ENST00000442216 ABCA10Q8WWZ4 1543 aa26.02■■□□□ 1.76
CSNK1E-210ENST00000442216 DNAJC5Q9H3Z4 198 aa25.99■■□□□ 1.75
CSNK1E-210ENST00000442216 TDRD9Q8NDG6 1382 aaKnown RBP25.97■■□□□ 1.75
CSNK1E-210ENST00000442216 ABCA5Q8WWZ7 1642 aa25.92■■□□□ 1.74
CSNK1E-210ENST00000442216 GAPVD1Q14C86 1478 aa25.9■■□□□ 1.74
CSNK1E-210ENST00000442216 PBRM1Q86U86 1689 aa25.89■■□□□ 1.73
CSNK1E-210ENST00000442216 GRIN2BQ13224 1484 aa25.88■■□□□ 1.73
CSNK1E-210ENST00000442216 MAGI1Q96QZ7 1491 aaPredicted RBP25.84■■□□□ 1.73
CSNK1E-210ENST00000442216 CHD1O14646 1710 aa25.81■■□□□ 1.72
CSNK1E-210ENST00000442216 OSCARQ8IYS5 282 aa25.81■■□□□ 1.72
CSNK1E-210ENST00000442216 SNAPC4Q5SXM2 1469 aa25.8■■□□□ 1.72
CSNK1E-210ENST00000442216 ERICH3Q5RHP9 1530 aa25.73■■□□□ 1.71
CSNK1E-210ENST00000442216 SYNJ2O15056 1496 aa25.72■■□□□ 1.71
CSNK1E-210ENST00000442216 KIF27Q86VH2 1401 aa25.66■■□□□ 1.7
CSNK1E-210ENST00000442216 FBLN2P98095 1184 aa25.65■■□□□ 1.7
CSNK1E-210ENST00000442216 CHMP7Q8WUX9 453 aaPredicted RBP25.65■■□□□ 1.7
CSNK1E-210ENST00000442216 ADAMTS12P58397 1594 aa25.65■■□□□ 1.7
CSNK1E-210ENST00000442216 FHAD1B1AJZ9 1412 aa25.61■■□□□ 1.69
CSNK1E-210ENST00000442216 TRIM41Q8WV44 630 aa25.59■■□□□ 1.69
CSNK1E-210ENST00000442216 GRIN2AQ12879 1464 aa25.55■■□□□ 1.68
CSNK1E-210ENST00000442216 CUL7Q14999 1698 aa25.53■■□□□ 1.68
CSNK1E-210ENST00000442216 IGF1RP08069 1367 aa25.52■■□□□ 1.68
CSNK1E-210ENST00000442216 CLASP1Q7Z460 1538 aa25.51■■□□□ 1.67
CSNK1E-210ENST00000442216 NUP160Q12769 1436 aa25.45■■□□□ 1.66
CSNK1E-210ENST00000442216 CEP170Q5SW79 1584 aa25.41■■□□□ 1.66
CSNK1E-210ENST00000442216 RIMBP3CA6NJZ7 1639 aa25.41■■□□□ 1.66
CSNK1E-210ENST00000442216 RIMBP3BA6NNM3 1639 aa25.41■■□□□ 1.66
CSNK1E-210ENST00000442216 RIMBP3Q9UFD9 1639 aa25.41■■□□□ 1.66
CSNK1E-210ENST00000442216 ARHGEF11O15085 1522 aa25.39■■□□□ 1.66
CSNK1E-210ENST00000442216 RUSC2Q8N2Y8 1516 aa25.38■■□□□ 1.65
CSNK1E-210ENST00000442216 CARMIL1Q5VZK9 1371 aa25.38■■□□□ 1.65
CSNK1E-210ENST00000442216 CHIC1Q5VXU3 224 aa25.32■■□□□ 1.64
CSNK1E-210ENST00000442216 SHROOM2Q13796 1616 aa25.29■■□□□ 1.64
CSNK1E-210ENST00000442216 EEA1Q15075 1411 aa25.26■■□□□ 1.63
CSNK1E-210ENST00000442216 RAPGEF2Q9Y4G8 1499 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms