RNA–Protein interactions for RNA: ENST00000318524.6

NFX1-201, Transcript of nuclear transcription factor, X-box binding 1, humanhuman

TSL 1 (best) BASIC

Gene NFX1, Length 3,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFX1-201ENST00000318524 NISCHQ9Y2I1 1504 aa13.81□□□□□ -0.2
NFX1-201ENST00000318524 DCAF8L2P0C7V8 631 aa12.57□□□□□ -0.4
NFX1-201ENST00000318524 SHROOM4Q9ULL8 1493 aa12.21□□□□□ -0.45
NFX1-201ENST00000318524 ABCC9O60706 1549 aa11.96□□□□□ -0.49
NFX1-201ENST00000318524 SUPT5HO00267 1087 aaKnown RBP11.76□□□□□ -0.53
NFX1-201ENST00000318524 CCDC180Q9P1Z9 1646 aa11.65□□□□□ -0.54
NFX1-201ENST00000318524 PABPN1Q86U42 306 aaKnown RBP eCLIP11.55□□□□□ -0.56
NFX1-201ENST00000318524 ZCCHC6Q5VYS8 1495 aaKnown RBP11.51□□□□□ -0.57
NFX1-201ENST00000318524 SCRIBQ14160 1630 aa11.4□□□□□ -0.58
NFX1-201ENST00000318524 CHIC1Q5VXU3 224 aa11.27□□□□□ -0.61
NFX1-201ENST00000318524 EHMT2Q96KQ7 1210 aa11.25□□□□□ -0.61
NFX1-201ENST00000318524 CECR2Q9BXF3 1484 aa11.07□□□□□ -0.64
NFX1-201ENST00000318524 RB1CC1Q8TDY2 1594 aa11.07□□□□□ -0.64
NFX1-201ENST00000318524 NACADO15069 1562 aa11.04□□□□□ -0.64
NFX1-201ENST00000318524 FAM9AQ8IZU1 332 aaPredicted RBP11.02□□□□□ -0.65
NFX1-201ENST00000318524 DCAF1Q9Y4B6 1507 aa10.97□□□□□ -0.65
NFX1-201ENST00000318524 RSF1Q96T23 1441 aaPredicted RBP10.87□□□□□ -0.67
NFX1-201ENST00000318524 MROH2BQ7Z745 1585 aa10.87□□□□□ -0.67
NFX1-201ENST00000318524 DNAJC5BQ9UF47 199 aa10.85□□□□□ -0.67
NFX1-201ENST00000318524 UNC13AQ9UPW8 1703 aa10.84□□□□□ -0.67
NFX1-201ENST00000318524 AEBP2Q6ZN18 517 aaPredicted RBP10.81□□□□□ -0.68
NFX1-201ENST00000318524 WIZO95785 1651 aa10.79□□□□□ -0.68
NFX1-201ENST00000318524 LOC105371045A0A1W2PR82 267 aa10.78□□□□□ -0.68
NFX1-201ENST00000318524 BICRAQ9NZM4 1560 aa10.78□□□□□ -0.68
NFX1-201ENST00000318524 RANGAP1P46060 587 aaPredicted RBP10.78□□□□□ -0.68
NFX1-201ENST00000318524 TRIM41Q8WV44 630 aa10.76□□□□□ -0.69
NFX1-201ENST00000318524 MYO15BQ96JP2 1530 aa10.76□□□□□ -0.69
NFX1-201ENST00000318524 TTBK1Q5TCY1 1321 aaPredicted RBP10.68□□□□□ -0.7
NFX1-201ENST00000318524 PPARGC1BQ86YN6 1023 aaKnown RBP10.63□□□□□ -0.71
NFX1-201ENST00000318524 BAZ1AQ9NRL2 1556 aaPredicted RBP10.62□□□□□ -0.71
NFX1-201ENST00000318524 SMARCA4P51532 1647 aa10.6□□□□□ -0.71
NFX1-201ENST00000318524 BAZ1BQ9UIG0 1483 aaKnown RBP10.57□□□□□ -0.72
NFX1-201ENST00000318524 CCDC88BA6NC98 1476 aa10.55□□□□□ -0.72
NFX1-201ENST00000318524 EIF4G1Q04637 1599 aaKnown RBP10.55□□□□□ -0.72
NFX1-201ENST00000318524 ATAD2BQ9ULI0 1458 aa10.54□□□□□ -0.72
NFX1-201ENST00000318524 ABCC8Q09428 1581 aa10.53□□□□□ -0.72
NFX1-201ENST00000318524 CC2D2AQ9P2K1 1620 aa10.47□□□□□ -0.73
NFX1-201ENST00000318524 UBTFP17480 764 aaKnown RBP10.45□□□□□ -0.74
NFX1-201ENST00000318524 NESP48681 1621 aa10.44□□□□□ -0.74
NFX1-201ENST00000318524 TOP2AP11388 1531 aaKnown RBP10.41□□□□□ -0.74
NFX1-201ENST00000318524 SMARCA2P51531 1590 aa10.4□□□□□ -0.74
NFX1-201ENST00000318524 SOGA1O94964 1423 aa10.35□□□□□ -0.75
NFX1-201ENST00000318524 RUSC2Q8N2Y8 1516 aa10.35□□□□□ -0.75
NFX1-201ENST00000318524 ATP1B4Q9UN42 357 aaPredicted RBP10.33□□□□□ -0.76
NFX1-201ENST00000318524 FBLN2P98095 1184 aa10.32□□□□□ -0.76
NFX1-201ENST00000318524 P3H3Q8IVL6 736 aa10.31□□□□□ -0.76
NFX1-201ENST00000318524 NCAPD3P42695 1498 aa10.3□□□□□ -0.76
NFX1-201ENST00000318524 PCGF6Q9BYE7 350 aa10.29□□□□□ -0.76
NFX1-201ENST00000318524 WRNQ14191 1432 aaPredicted RBP eCLIP10.29□□□□□ -0.76
NFX1-201ENST00000318524 ARID3CA6NKF2 412 aa10.28□□□□□ -0.76
NFX1-201ENST00000318524 CADPSQ9ULU8 1353 aa10.24□□□□□ -0.77
NFX1-201ENST00000318524 CSRNP3Q8WYN3 585 aa10.24□□□□□ -0.77
NFX1-201ENST00000318524 TDRD9Q8NDG6 1382 aaKnown RBP10.21□□□□□ -0.78
NFX1-201ENST00000318524 ERCC6Q03468 1493 aa10.2□□□□□ -0.78
NFX1-201ENST00000318524 SYNJ1O43426 1573 aa10.18□□□□□ -0.78
NFX1-201ENST00000318524 RAD54L2Q9Y4B4 1467 aa10.18□□□□□ -0.78
NFX1-201ENST00000318524 FANCD2Q9BXW9 1451 aa10.18□□□□□ -0.78
NFX1-201ENST00000318524 PEG3Q9GZU2 1588 aa10.16□□□□□ -0.78
NFX1-201ENST00000318524 HMGXB3Q12766 1538 aa10.14□□□□□ -0.79
NFX1-201ENST00000318524 CUX2O14529 1486 aa10.12□□□□□ -0.79
NFX1-201ENST00000318524 CFTRP13569 1480 aa10.12□□□□□ -0.79
NFX1-201ENST00000318524 CUX1P39880 1505 aa10.1□□□□□ -0.79
NFX1-201ENST00000318524 ITGAEP38570 1179 aa10.1□□□□□ -0.79
NFX1-201ENST00000318524 FGD5Q6ZNL6 1462 aa10.08□□□□□ -0.8
NFX1-201ENST00000318524 CEP164Q9UPV0 1460 aa10.07□□□□□ -0.8
NFX1-201ENST00000318524 AQRO60306 1485 aaKnown RBP eCLIP10.06□□□□□ -0.82e-8■■■■■ 31.5
NFX1-201ENST00000318524 PDS5BQ9NTI5 1447 aa10.05□□□□□ -0.8
NFX1-201ENST00000318524 RAPGEF2Q9Y4G8 1499 aa10.05□□□□□ -0.8
NFX1-201ENST00000318524 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.04□□□□□ -0.8
NFX1-201ENST00000318524 HNRNPUL2Q1KMD3 747 aaKnown RBP10.04□□□□□ -0.8
NFX1-201ENST00000318524 APLP2Q06481 763 aa10.03□□□□□ -0.8
NFX1-201ENST00000318524 URB2Q14146 1524 aaKnown RBP10.01□□□□□ -0.81
NFX1-201ENST00000318524 CHMP7Q8WUX9 453 aaPredicted RBP10□□□□□ -0.81
NFX1-201ENST00000318524 KIF21AQ7Z4S6 1674 aa10□□□□□ -0.81
NFX1-201ENST00000318524 TOPBP1Q92547 1522 aa9.99□□□□□ -0.81
NFX1-201ENST00000318524 KIF27Q86VH2 1401 aa9.99□□□□□ -0.81
NFX1-201ENST00000318524 POLA1P09884 1462 aaPredicted RBP9.99□□□□□ -0.81
NFX1-201ENST00000318524 CEP162Q5TB80 1403 aa9.98□□□□□ -0.81
NFX1-201ENST00000318524 ZNF608Q9ULD9 1512 aaPredicted RBP9.98□□□□□ -0.81
NFX1-201ENST00000318524 CARMIL1Q5VZK9 1371 aa9.97□□□□□ -0.81
NFX1-201ENST00000318524 PHF23Q9BUL5 403 aaPredicted RBP9.95□□□□□ -0.82
NFX1-201ENST00000318524 IGF1RP08069 1367 aa9.95□□□□□ -0.82
NFX1-201ENST00000318524 TOP2BQ02880 1626 aa9.94□□□□□ -0.82
NFX1-201ENST00000318524 CLIP1P30622 1438 aa9.93□□□□□ -0.82
NFX1-201ENST00000318524 GOLGA3Q08378 1498 aa9.91□□□□□ -0.82
NFX1-201ENST00000318524 LAMC3Q9Y6N6 1575 aa9.89□□□□□ -0.83
NFX1-201ENST00000318524 KANK4Q5T7N3 995 aaPredicted RBP9.89□□□□□ -0.83
NFX1-201ENST00000318524 GAPVD1Q14C86 1478 aa9.87□□□□□ -0.83
NFX1-201ENST00000318524 MRC2Q9UBG0 1479 aa9.87□□□□□ -0.83
NFX1-201ENST00000318524 FHOD3Q2V2M9 1422 aa9.86□□□□□ -0.83
NFX1-201ENST00000318524 TRIM26Q12899 539 aaPredicted RBP9.86□□□□□ -0.83
NFX1-201ENST00000318524 FAM50AQ14320 339 aaKnown RBP9.85□□□□□ -0.83
NFX1-201ENST00000318524 DNMBPQ6XZF7 1577 aa9.85□□□□□ -0.83
NFX1-201ENST00000318524 TNIKQ9UKE5 1360 aa9.85□□□□□ -0.83
NFX1-201ENST00000318524 BIVM-ERCC5R4GMW8 1640 aa9.81□□□□□ -0.84
NFX1-201ENST00000318524 EEA1Q15075 1411 aa9.8□□□□□ -0.84
NFX1-201ENST00000318524 ZNF777Q9ULD5 760 aaPredicted RBP9.8□□□□□ -0.84
NFX1-201ENST00000318524 SNAPC4Q5SXM2 1469 aa9.8□□□□□ -0.84
NFX1-201ENST00000318524 CCER1Q8TC90 406 aaPredicted RBP9.79□□□□□ -0.84
NFX1-201ENST00000318524 KCNH8Q96L42 1107 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms