Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.95■□□□□ 0.3
USP46P62068 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.95■□□□□ 0.3
USP46P62068 PCDHA14-201ENST00000506751 2298 ntBASIC16.95■□□□□ 0.3
USP46P62068 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
USP46P62068 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
USP46P62068 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.95■□□□□ 0.3
USP46P62068 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.95■□□□□ 0.3
USP46P62068 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.95■□□□□ 0.3
USP46P62068 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.95■□□□□ 0.3
USP46P62068 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.95■□□□□ 0.3
USP46P62068 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.95■□□□□ 0.3
USP46P62068 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.95■□□□□ 0.3
USP46P62068 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.95■□□□□ 0.3
USP46P62068 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.95■□□□□ 0.3
USP46P62068 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
USP46P62068 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
USP46P62068 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
USP46P62068 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.95■□□□□ 0.3
USP46P62068 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
USP46P62068 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP46P62068 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
USP46P62068 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.94■□□□□ 0.3
USP46P62068 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 CYP4F24P-201ENST00000586049 1580 ntBASIC16.94■□□□□ 0.3
USP46P62068 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
USP46P62068 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
USP46P62068 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
USP46P62068 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USP46P62068 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USP46P62068 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.94■□□□□ 0.3
USP46P62068 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.94■□□□□ 0.3
USP46P62068 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.94■□□□□ 0.3
USP46P62068 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
USP46P62068 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.94■□□□□ 0.3
USP46P62068 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
USP46P62068 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.94■□□□□ 0.3
USP46P62068 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.94■□□□□ 0.3
USP46P62068 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.94■□□□□ 0.3
USP46P62068 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.94■□□□□ 0.3
USP46P62068 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.94■□□□□ 0.3
USP46P62068 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.94■□□□□ 0.3
USP46P62068 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
USP46P62068 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.94■□□□□ 0.3
USP46P62068 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP46P62068 AC092364.2-201ENST00000596710 2692 ntBASIC16.93■□□□□ 0.3
USP46P62068 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
USP46P62068 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.93■□□□□ 0.3
USP46P62068 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
USP46P62068 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.93■□□□□ 0.3
USP46P62068 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.93■□□□□ 0.3
USP46P62068 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.93■□□□□ 0.3
USP46P62068 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.93■□□□□ 0.3
USP46P62068 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USP46P62068 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms