RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 NISCHQ9Y2I1 1504 aa36.04■■■■□ 3.36
CCDC43-202ENST00000457422 CCDC180Q9P1Z9 1646 aa31.07■■■□□ 2.56
CCDC43-202ENST00000457422 ZCCHC6Q5VYS8 1495 aaKnown RBP30.45■■■□□ 2.46
CCDC43-202ENST00000457422 SHROOM4Q9ULL8 1493 aa30.06■■■□□ 2.4
CCDC43-202ENST00000457422 DCAF1Q9Y4B6 1507 aa29.8■■■□□ 2.36
CCDC43-202ENST00000457422 DCAF8L2P0C7V8 631 aa29.6■■■□□ 2.33
CCDC43-202ENST00000457422 SUPT5HO00267 1087 aaKnown RBP29.24■■■□□ 2.27
CCDC43-202ENST00000457422 MYO15BQ96JP2 1530 aa29.15■■■□□ 2.26
CCDC43-202ENST00000457422 ABCC9O60706 1549 aa28.76■■■□□ 2.2
CCDC43-202ENST00000457422 NACADO15069 1562 aa28.74■■■□□ 2.19
CCDC43-202ENST00000457422 SCRIBQ14160 1630 aa28.71■■■□□ 2.19
CCDC43-202ENST00000457422 CHIC1Q5VXU3 224 aa28.34■■■□□ 2.13
CCDC43-202ENST00000457422 RB1CC1Q8TDY2 1594 aa28.31■■■□□ 2.12
CCDC43-202ENST00000457422 RSF1Q96T23 1441 aaPredicted RBP28.26■■■□□ 2.11
CCDC43-202ENST00000457422 CECR2Q9BXF3 1484 aa27.96■■■□□ 2.07
CCDC43-202ENST00000457422 MROH2BQ7Z745 1585 aa27.89■■■□□ 2.06
CCDC43-202ENST00000457422 UNC13AQ9UPW8 1703 aa27.86■■■□□ 2.05
CCDC43-202ENST00000457422 BAZ1AQ9NRL2 1556 aaPredicted RBP27.76■■■□□ 2.03
CCDC43-202ENST00000457422 WIZO95785 1651 aa27.72■■■□□ 2.03
CCDC43-202ENST00000457422 SMARCA4P51532 1647 aa27.56■■■□□ 2
CCDC43-202ENST00000457422 BICRAQ9NZM4 1560 aa27.5■■□□□ 1.99
CCDC43-202ENST00000457422 TOP2AP11388 1531 aaKnown RBP27.42■■□□□ 1.98
CCDC43-202ENST00000457422 LOC105371045A0A1W2PR82 267 aa27.34■■□□□ 1.97
CCDC43-202ENST00000457422 TRIM41Q8WV44 630 aa27.34■■□□□ 1.97
CCDC43-202ENST00000457422 EIF4G1Q04637 1599 aaKnown RBP27.33■■□□□ 1.97
CCDC43-202ENST00000457422 PABPN1Q86U42 306 aaKnown RBP eCLIP27.32■■□□□ 1.96
CCDC43-202ENST00000457422 SMARCA2P51531 1590 aa27.21■■□□□ 1.95
CCDC43-202ENST00000457422 PEG3Q9GZU2 1588 aa27.19■■□□□ 1.94
CCDC43-202ENST00000457422 CCDC88BA6NC98 1476 aa27.16■■□□□ 1.94
CCDC43-202ENST00000457422 FAM9AQ8IZU1 332 aaPredicted RBP27■■□□□ 1.91
CCDC43-202ENST00000457422 ATAD2BQ9ULI0 1458 aa26.9■■□□□ 1.9
CCDC43-202ENST00000457422 ABCC8Q09428 1581 aa26.87■■□□□ 1.89
CCDC43-202ENST00000457422 PCGF6Q9BYE7 350 aa26.86■■□□□ 1.89
CCDC43-202ENST00000457422 BAZ1BQ9UIG0 1483 aaKnown RBP26.79■■□□□ 1.88
CCDC43-202ENST00000457422 HRCP23327 699 aa26.7■■□□□ 1.86
CCDC43-202ENST00000457422 EHMT2Q96KQ7 1210 aa26.69■■□□□ 1.86
CCDC43-202ENST00000457422 TRIM26Q12899 539 aaPredicted RBP26.63■■□□□ 1.85
CCDC43-202ENST00000457422 EEA1Q15075 1411 aa26.57■■□□□ 1.84
CCDC43-202ENST00000457422 HMGXB3Q12766 1538 aa26.57■■□□□ 1.84
CCDC43-202ENST00000457422 WRNQ14191 1432 aaPredicted RBP eCLIP26.56■■□□□ 1.84
CCDC43-202ENST00000457422 NCAPD3P42695 1498 aa26.53■■□□□ 1.84
CCDC43-202ENST00000457422 SOGA1O94964 1423 aa26.5■■□□□ 1.83
CCDC43-202ENST00000457422 SYNJ1O43426 1573 aa26.46■■□□□ 1.83
CCDC43-202ENST00000457422 RUSC2Q8N2Y8 1516 aa26.39■■□□□ 1.81
CCDC43-202ENST00000457422 CSRNP3Q8WYN3 585 aa26.34■■□□□ 1.81
CCDC43-202ENST00000457422 TNIKQ9UKE5 1360 aa26.31■■□□□ 1.8
CCDC43-202ENST00000457422 TOP2BQ02880 1626 aa26.28■■□□□ 1.8
CCDC43-202ENST00000457422 GOLGA3Q08378 1498 aa26.25■■□□□ 1.79
CCDC43-202ENST00000457422 BIVM-ERCC5R4GMW8 1640 aa26.25■■□□□ 1.79
CCDC43-202ENST00000457422 CEP162Q5TB80 1403 aa26.24■■□□□ 1.79
CCDC43-202ENST00000457422 KIF21BO75037 1637 aa26.22■■□□□ 1.79
CCDC43-202ENST00000457422 CEP164Q9UPV0 1460 aa26.17■■□□□ 1.78
CCDC43-202ENST00000457422 CFTRP13569 1480 aa26.16■■□□□ 1.78
CCDC43-202ENST00000457422 PRDM2Q13029 1718 aa26.11■■□□□ 1.77
CCDC43-202ENST00000457422 UBTFP17480 764 aaKnown RBP26.08■■□□□ 1.77
CCDC43-202ENST00000457422 PPARGC1BQ86YN6 1023 aaKnown RBP26.08■■□□□ 1.77
CCDC43-202ENST00000457422 CUX1P39880 1505 aa26.03■■□□□ 1.76
CCDC43-202ENST00000457422 CC2D2AQ9P2K1 1620 aa26.01■■□□□ 1.75
CCDC43-202ENST00000457422 ZEB1P37275 1124 aaPredicted RBP25.95■■□□□ 1.74
CCDC43-202ENST00000457422 RAPGEF2Q9Y4G8 1499 aa25.93■■□□□ 1.74
CCDC43-202ENST00000457422 ERICH3Q5RHP9 1530 aa25.9■■□□□ 1.74
CCDC43-202ENST00000457422 CADPSQ9ULU8 1353 aa25.9■■□□□ 1.74
CCDC43-202ENST00000457422 CLIP1P30622 1438 aa25.86■■□□□ 1.73
CCDC43-202ENST00000457422 PRXQ9BXM0 1461 aa25.86■■□□□ 1.73
CCDC43-202ENST00000457422 KIF27Q86VH2 1401 aa25.81■■□□□ 1.72
CCDC43-202ENST00000457422 VPS8Q8N3P4 1428 aa25.75■■□□□ 1.71
CCDC43-202ENST00000457422 TTBK1Q5TCY1 1321 aaPredicted RBP25.75■■□□□ 1.71
CCDC43-202ENST00000457422 FANCD2Q9BXW9 1451 aa25.62■■□□□ 1.69
CCDC43-202ENST00000457422 FGD5Q6ZNL6 1462 aa25.61■■□□□ 1.69
CCDC43-202ENST00000457422 RANGAP1P46060 587 aaPredicted RBP25.58■■□□□ 1.69
CCDC43-202ENST00000457422 CUX2O14529 1486 aa25.58■■□□□ 1.69
CCDC43-202ENST00000457422 DNMBPQ6XZF7 1577 aa25.55■■□□□ 1.68
CCDC43-202ENST00000457422 ARAP1Q96P48 1450 aa25.53■■□□□ 1.68
CCDC43-202ENST00000457422 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.52■■□□□ 1.68
CCDC43-202ENST00000457422 IGF1RP08069 1367 aa25.51■■□□□ 1.67
CCDC43-202ENST00000457422 LAMC3Q9Y6N6 1575 aa25.51■■□□□ 1.67
CCDC43-202ENST00000457422 NESP48681 1621 aa25.5■■□□□ 1.67
CCDC43-202ENST00000457422 CCER1Q8TC90 406 aaPredicted RBP25.45■■□□□ 1.66
CCDC43-202ENST00000457422 TOPBP1Q92547 1522 aa25.44■■□□□ 1.66
CCDC43-202ENST00000457422 APLP2Q06481 763 aa25.44■■□□□ 1.66
CCDC43-202ENST00000457422 ABCA10Q8WWZ4 1543 aa25.4■■□□□ 1.66
CCDC43-202ENST00000457422 CARMIL1Q5VZK9 1371 aa25.39■■□□□ 1.65
CCDC43-202ENST00000457422 POLA1P09884 1462 aaPredicted RBP25.39■■□□□ 1.65
CCDC43-202ENST00000457422 ARHGAP35Q9NRY4 1499 aa25.39■■□□□ 1.65
CCDC43-202ENST00000457422 RAD54L2Q9Y4B4 1467 aa25.34■■□□□ 1.65
CCDC43-202ENST00000457422 WDR97A6NE52 1622 aa25.29■■□□□ 1.64
CCDC43-202ENST00000457422 URB2Q14146 1524 aaKnown RBP25.28■■□□□ 1.64
CCDC43-202ENST00000457422 CUL7Q14999 1698 aa25.27■■□□□ 1.64
CCDC43-202ENST00000457422 PDS5BQ9NTI5 1447 aa25.26■■□□□ 1.63
CCDC43-202ENST00000457422 DNAJC5BQ9UF47 199 aa25.25■■□□□ 1.63
CCDC43-202ENST00000457422 HNRNPUL2Q1KMD3 747 aaKnown RBP25.21■■□□□ 1.63
CCDC43-202ENST00000457422 KIF21AQ7Z4S6 1674 aa25.18■■□□□ 1.62
CCDC43-202ENST00000457422 MAP3K1Q13233 1512 aa25.17■■□□□ 1.62
CCDC43-202ENST00000457422 KANK4Q5T7N3 995 aaPredicted RBP25.17■■□□□ 1.62
CCDC43-202ENST00000457422 ABCA5Q8WWZ7 1642 aa25.16■■□□□ 1.62
CCDC43-202ENST00000457422 CTTNBP2Q8WZ74 1663 aa25.12■■□□□ 1.61
CCDC43-202ENST00000457422 RRBP1Q9P2E9 1410 aaKnown RBP25.12■■□□□ 1.61
CCDC43-202ENST00000457422 TIAM1Q13009 1591 aa25.09■■□□□ 1.61
CCDC43-202ENST00000457422 EFCAB5A4FU69 1503 aa25.09■■□□□ 1.61
CCDC43-202ENST00000457422 FHAD1B1AJZ9 1412 aa25.08■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms